Wall clock time and date at job start Tue Mar 31 2020 22:25:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08991 * 109.46670 * 2 1 4 4 C 1.53349 * 109.41565 * 240.09708 * 2 1 3 5 5 C 1.53194 * 109.14918 * 178.67647 * 4 2 1 6 6 N 1.46934 * 108.89214 * 54.57866 * 5 4 2 7 7 C 1.36935 * 120.62776 * 126.34278 * 6 5 4 8 8 H 1.08003 * 120.00334 * 331.82288 * 7 6 5 9 9 C 1.38816 * 120.00109 * 151.82327 * 7 6 5 10 10 N 1.31624 * 119.99356 * 343.07479 * 9 7 6 11 11 Si 1.86793 * 120.00395 * 163.07501 * 9 7 6 12 12 H 1.48500 * 109.47341 * 59.99642 * 11 9 7 13 13 H 1.48504 * 109.47235 * 180.02562 * 11 9 7 14 14 H 1.48504 * 109.46651 * 299.99824 * 11 9 7 15 15 C 1.46917 * 118.73910 * 306.32295 * 6 5 4 16 16 C 1.53042 * 109.45796 * 119.97381 * 2 1 3 17 17 H 1.08999 * 109.52559 * 301.34719 * 16 2 1 18 18 N 1.46498 * 109.50153 * 61.43341 * 16 2 1 19 19 C 1.34781 * 120.00195 * 204.83823 * 18 16 2 20 20 O 1.21545 * 119.99628 * 359.97438 * 19 18 16 21 21 C 1.47882 * 119.99778 * 179.97438 * 19 18 16 22 22 C 1.40573 * 119.70843 * 359.72635 * 21 19 18 23 23 C 1.35808 * 120.73399 * 179.73068 * 22 21 19 24 24 C 1.40551 * 119.98041 * 0.56081 * 23 22 21 25 25 C 1.40819 * 121.12699 * 179.71694 * 24 23 22 26 26 C 1.36561 * 118.20088 * 179.97438 * 25 24 23 27 27 C 1.39420 * 119.93274 * 0.02562 * 26 25 24 28 28 N 1.31016 * 121.71427 * 359.97438 * 27 26 25 29 29 C 1.33741 * 121.35384 * 0.04330 * 28 27 26 30 30 C 1.38408 * 119.70034 * 179.97438 * 21 19 18 31 31 H 1.09000 * 109.46817 * 300.02558 * 1 2 3 32 32 H 1.08991 * 109.47274 * 60.02564 * 1 2 3 33 33 H 1.08995 * 109.47589 * 180.02562 * 1 2 3 34 34 H 1.08996 * 109.68610 * 58.71674 * 4 2 1 35 35 H 1.09002 * 109.47692 * 298.51393 * 4 2 1 36 36 H 1.09003 * 109.58905 * 294.72177 * 5 4 2 37 37 H 1.09001 * 109.58865 * 174.43764 * 5 4 2 38 38 H 0.96997 * 119.99488 * 180.02562 * 10 9 7 39 39 H 1.09003 * 109.58812 * 173.39821 * 15 6 5 40 40 H 1.09007 * 109.58397 * 293.82038 * 15 6 5 41 41 H 0.97007 * 119.99694 * 24.83354 * 18 16 2 42 42 H 1.08005 * 119.63098 * 359.97438 * 22 21 19 43 43 H 1.07999 * 120.01051 * 180.23660 * 23 22 21 44 44 H 1.08001 * 120.90191 * 359.95949 * 25 24 23 45 45 H 1.08001 * 120.03416 * 180.02562 * 26 25 24 46 46 H 1.07999 * 119.13727 * 179.97438 * 27 26 25 47 47 H 1.08000 * 120.23663 * 0.02562 * 30 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0276 0.0000 4 6 2.0398 -0.7210 -1.2537 5 6 3.5713 -0.6886 -1.2643 6 7 4.0678 -1.2490 -0.0001 7 6 4.9763 -2.2735 -0.0002 8 1 5.0042 -2.9704 -0.8249 9 6 5.8614 -2.4166 1.0595 10 7 6.0659 -1.4128 1.8861 11 14 6.7622 -4.0332 1.3125 12 1 7.5860 -4.3338 0.1141 13 1 7.6415 -3.9287 2.5047 14 1 5.7747 -5.1228 1.5204 15 6 3.5714 -0.6889 1.2642 16 6 2.0398 -0.7209 1.2500 17 1 1.6572 -0.2215 2.1401 18 7 1.5801 -2.1118 1.2341 19 6 1.4546 -2.7934 2.3900 20 8 1.7234 -2.2542 3.4457 21 6 0.9900 -4.1973 2.3739 22 6 0.6754 -4.8130 1.1500 23 6 0.2521 -6.1028 1.1104 24 6 0.1133 -6.8333 2.3031 25 6 -0.3294 -8.1700 2.2907 26 6 -0.4421 -8.8236 3.4845 27 6 -0.1227 -8.1650 4.6711 28 7 0.2889 -6.9212 4.6792 29 6 0.4207 -6.2244 3.5452 30 6 0.8639 -4.8916 3.5646 31 1 -0.3633 0.5142 0.8898 32 1 -0.3633 0.5134 -0.8901 33 1 -0.3634 -1.0276 0.0005 34 1 1.6592 -0.2217 -2.1447 35 1 1.6979 -1.7560 -1.2421 36 1 3.9143 0.3410 -1.3673 37 1 3.9437 -1.2829 -2.0987 38 1 6.6846 -1.5126 2.6264 39 1 3.9417 -1.2849 2.0983 40 1 3.9143 0.3407 1.3673 41 1 1.3659 -2.5422 0.3915 42 1 0.7752 -4.2552 0.2304 43 1 0.0172 -6.5654 0.1632 44 1 -0.5733 -8.6649 1.3623 45 1 -0.7785 -9.8496 3.5094 46 1 -0.2169 -8.6940 5.6079 47 1 1.1030 -4.4116 4.5020 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000968440507.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:25:27 Heat of formation + Delta-G solvation = 18.338386 kcal Electronic energy + Delta-G solvation = -29892.888996 eV Core-core repulsion = 26039.916437 eV Total energy + Delta-G solvation = -3852.972559 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -41.96303 -41.05317 -39.25595 -37.69020 -35.96040 -34.49330 -34.41152 -32.86431 -31.97598 -31.05089 -30.53964 -28.92348 -26.27220 -25.57963 -24.87703 -23.83549 -23.12066 -22.75824 -22.16041 -20.33963 -19.66074 -18.70916 -18.46444 -17.79595 -17.24563 -16.87427 -16.60571 -16.03706 -15.73489 -15.50751 -15.45854 -15.30440 -15.02147 -14.94023 -14.69340 -14.60751 -14.56807 -14.09731 -13.92177 -13.58777 -13.15464 -13.03229 -12.95783 -12.77530 -12.70438 -12.61932 -12.51313 -12.48350 -12.28582 -11.96026 -11.56580 -11.56309 -11.33207 -11.06639 -11.01568 -10.54777 -10.49716 -10.07334 -9.79789 -9.34359 -8.64856 -7.87606 -5.32007 -0.77362 -0.36542 0.86740 1.36256 1.41590 1.45465 1.48621 2.14137 2.36327 2.46607 3.08484 3.27962 3.29176 3.52934 3.65621 3.69202 3.83114 3.87405 3.95347 3.99571 4.03678 4.06878 4.13484 4.28868 4.51767 4.56526 4.67535 4.71585 4.72043 4.79325 4.85873 4.89127 4.96914 4.97161 5.07182 5.09642 5.17971 5.18819 5.24954 5.27045 5.29595 5.47281 5.49823 5.52108 5.59527 5.69602 5.71030 5.78083 6.38197 6.60674 6.90849 7.13531 7.26783 7.87462 8.38111 9.17281 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.010520 B = 0.004154 C = 0.003441 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2661.003702 B = 6738.858747 C = 8135.111822 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.087 4.087 3 H 0.077 0.923 4 C -0.116 4.116 5 C 0.135 3.865 6 N -0.599 5.599 7 C -0.247 4.247 8 H 0.073 0.927 9 C -0.050 4.050 10 N -0.934 5.934 11 Si 0.949 3.051 12 H -0.265 1.265 13 H -0.303 1.303 14 H -0.286 1.286 15 C 0.171 3.829 16 C 0.135 3.865 17 H 0.062 0.938 18 N -0.676 5.676 19 C 0.546 3.454 20 O -0.589 6.589 21 C -0.118 4.118 22 C -0.099 4.099 23 C -0.081 4.081 24 C -0.103 4.103 25 C -0.055 4.055 26 C -0.163 4.163 27 C 0.126 3.874 28 N -0.516 5.516 29 C 0.094 3.906 30 C -0.059 4.059 31 H 0.047 0.953 32 H 0.079 0.921 33 H 0.057 0.943 34 H 0.095 0.905 35 H 0.064 0.936 36 H 0.013 0.987 37 H 0.060 0.940 38 H 0.244 0.756 39 H 0.045 0.955 40 H -0.002 1.002 41 H 0.407 0.593 42 H 0.152 0.848 43 H 0.182 0.818 44 H 0.184 0.816 45 H 0.183 0.817 46 H 0.189 0.811 47 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.649 -13.032 -6.825 24.545 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.106 4.106 3 H 0.096 0.904 4 C -0.154 4.154 5 C 0.010 3.990 6 N -0.323 5.323 7 C -0.378 4.378 8 H 0.091 0.909 9 C -0.245 4.245 10 N -0.580 5.580 11 Si 0.779 3.221 12 H -0.190 1.190 13 H -0.230 1.230 14 H -0.213 1.213 15 C 0.044 3.956 16 C 0.029 3.971 17 H 0.080 0.920 18 N -0.326 5.326 19 C 0.334 3.666 20 O -0.472 6.472 21 C -0.123 4.123 22 C -0.117 4.117 23 C -0.099 4.099 24 C -0.105 4.105 25 C -0.080 4.080 26 C -0.182 4.182 27 C -0.047 4.047 28 N -0.225 5.225 29 C -0.025 4.025 30 C -0.079 4.079 31 H 0.066 0.934 32 H 0.098 0.902 33 H 0.076 0.924 34 H 0.113 0.887 35 H 0.082 0.918 36 H 0.031 0.969 37 H 0.078 0.922 38 H 0.053 0.947 39 H 0.063 0.937 40 H 0.016 0.984 41 H 0.246 0.754 42 H 0.170 0.830 43 H 0.200 0.800 44 H 0.201 0.799 45 H 0.200 0.800 46 H 0.205 0.795 47 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -19.091 -12.072 -5.280 23.197 hybrid contribution 1.230 -0.619 0.164 1.387 sum -17.861 -12.692 -5.116 22.500 Atomic orbital electron populations 1.21770 0.92989 1.02241 1.02309 1.21333 0.96912 0.99168 0.93200 0.90440 1.22029 0.95498 1.00536 0.97380 1.21173 0.93803 0.95966 0.88069 1.44158 1.48046 1.39448 1.00610 1.19409 1.08900 1.03449 1.06035 0.90911 1.25687 0.98854 0.99534 1.00446 1.70159 1.38463 1.30807 1.18618 0.85601 0.78337 0.81018 0.77193 1.18976 1.23011 1.21284 1.20858 0.90008 0.95027 0.89738 1.21542 0.95305 0.81367 0.98895 0.91992 1.45575 1.65361 1.13542 1.08169 1.18627 0.77344 0.86545 0.84083 1.90722 1.52880 1.70932 1.32622 1.19953 1.03423 0.93631 0.95293 1.21170 0.97895 0.96487 0.96186 1.21341 0.97135 0.93027 0.98392 1.19294 1.00658 0.96874 0.93712 1.22018 0.93611 0.91146 1.01263 1.22426 1.00148 1.03347 0.92257 1.23712 0.90933 0.89239 1.00840 1.67989 1.14641 1.10246 1.29625 1.18805 0.99871 0.93785 0.90058 1.21131 0.96006 0.92776 0.97986 0.93404 0.90237 0.92398 0.88686 0.91750 0.96922 0.92186 0.94741 0.93661 0.98423 0.75366 0.83040 0.80040 0.79922 0.79978 0.79461 0.86553 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.98 9.05 71.98 0.65 -2.32 16 2 C -0.09 -2.52 2.48 -10.66 -0.03 -2.54 16 3 H 0.08 2.29 8.14 -2.39 -0.02 2.27 16 4 C -0.12 -3.13 5.23 30.78 0.16 -2.97 16 5 C 0.13 5.06 6.50 86.36 0.56 5.62 16 6 N -0.60 -29.17 2.91 -699.07 -2.04 -31.20 16 7 C -0.25 -13.48 9.58 84.03 0.81 -12.68 16 8 H 0.07 3.76 7.89 -2.91 -0.02 3.74 16 9 C -0.05 -2.91 4.92 84.86 0.42 -2.49 16 10 N -0.93 -58.99 11.20 21.65 0.24 -58.75 16 11 Si 0.95 47.56 29.59 68.60 2.03 49.59 16 12 H -0.26 -12.32 7.11 99.48 0.71 -11.62 16 13 H -0.30 -15.72 7.11 99.48 0.71 -15.01 16 14 H -0.29 -14.24 7.11 99.48 0.71 -13.53 16 15 C 0.17 8.65 4.90 86.37 0.42 9.07 16 16 C 0.14 5.27 2.24 45.07 0.10 5.38 16 17 H 0.06 2.61 7.58 -2.39 -0.02 2.59 16 18 N -0.68 -24.50 4.20 -445.00 -1.87 -26.38 16 19 C 0.55 22.80 7.73 86.80 0.67 23.47 16 20 O -0.59 -30.09 15.96 -3.86 -0.06 -30.15 16 21 C -0.12 -4.16 5.87 -20.11 -0.12 -4.27 16 22 C -0.10 -2.52 9.44 22.28 0.21 -2.31 16 23 C -0.08 -1.59 9.74 22.27 0.22 -1.38 16 24 C -0.10 -2.36 5.75 -21.23 -0.12 -2.48 16 25 C -0.05 -0.77 9.88 22.51 0.22 -0.55 16 26 C -0.16 -2.02 10.03 22.16 0.22 -1.80 16 27 C 0.13 2.36 11.15 85.10 0.95 3.31 16 28 N -0.52 -15.20 10.34 -188.66 -1.95 -17.15 16 29 C 0.09 2.94 6.60 40.25 0.27 3.21 16 30 C -0.06 -2.18 9.56 22.85 0.22 -1.96 16 31 H 0.05 1.10 8.14 -2.39 -0.02 1.08 16 32 H 0.08 1.35 8.14 -2.39 -0.02 1.33 16 33 H 0.06 1.20 7.54 -2.39 -0.02 1.18 16 34 H 0.09 1.94 8.14 -2.39 -0.02 1.92 16 35 H 0.06 1.63 6.41 -2.39 -0.02 1.62 16 36 H 0.01 0.50 8.14 -2.39 -0.02 0.48 16 37 H 0.06 2.16 7.93 -2.39 -0.02 2.14 16 38 H 0.24 15.29 8.31 -92.71 -0.77 14.52 16 39 H 0.04 2.78 6.06 -2.39 -0.01 2.76 16 40 H 0.00 -0.12 8.14 -2.38 -0.02 -0.14 16 41 H 0.41 12.20 4.62 -92.70 -0.43 11.77 16 42 H 0.15 3.06 6.34 -2.91 -0.02 3.05 16 43 H 0.18 1.82 8.06 -2.91 -0.02 1.80 16 44 H 0.18 0.96 8.06 -2.91 -0.02 0.94 16 45 H 0.18 0.64 8.06 -2.91 -0.02 0.61 16 46 H 0.19 2.15 8.06 -2.91 -0.02 2.13 16 47 H 0.12 4.84 7.60 -2.91 -0.02 4.82 16 Total: -1.00 -84.02 377.53 2.75 -81.27 By element: Atomic # 1 Polarization: 19.89 SS G_CDS: 0.56 Total: 20.45 kcal Atomic # 6 Polarization: 6.48 SS G_CDS: 5.83 Total: 12.31 kcal Atomic # 7 Polarization: -127.87 SS G_CDS: -5.61 Total: -133.48 kcal Atomic # 8 Polarization: -30.09 SS G_CDS: -0.06 Total: -30.15 kcal Atomic # 14 Polarization: 47.56 SS G_CDS: 2.03 Total: 49.59 kcal Total: -84.02 2.75 -81.27 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000968440507.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.613 kcal (2) G-P(sol) polarization free energy of solvation -84.022 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.591 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.748 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.275 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.338 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds