Wall clock time and date at job start Tue Mar 31 2020 22:26:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08997 * 109.46523 * 2 1 4 4 C 1.53042 * 109.45944 * 119.96486 * 2 1 3 5 5 C 1.53192 * 109.31092 * 181.38145 * 4 2 1 6 6 N 1.46930 * 108.77733 * 305.36183 * 5 4 2 7 7 C 1.36931 * 120.63043 * 233.62893 * 6 5 4 8 8 H 1.08003 * 119.99866 * 150.50242 * 7 6 5 9 9 C 1.38805 * 120.00381 * 330.50518 * 7 6 5 10 10 N 1.31626 * 120.00177 * 160.66740 * 9 7 6 11 11 Si 1.86805 * 119.99927 * 340.66542 * 9 7 6 12 12 H 1.48495 * 109.47120 * 89.92682 * 11 9 7 13 13 H 1.48499 * 109.47040 * 209.92872 * 11 9 7 14 14 H 1.48499 * 109.47142 * 329.92657 * 11 9 7 15 15 C 1.46928 * 118.73443 * 53.61225 * 6 5 4 16 16 C 1.53045 * 109.45754 * 240.02967 * 2 1 3 17 17 H 1.08998 * 109.49508 * 58.63029 * 16 2 1 18 18 N 1.46497 * 109.49896 * 298.56958 * 16 2 1 19 19 C 1.34769 * 120.00223 * 155.00125 * 18 16 2 20 20 O 1.21582 * 120.00104 * 359.97438 * 19 18 16 21 21 C 1.47572 * 120.00424 * 180.02562 * 19 18 16 22 22 C 1.38709 * 120.42915 * 354.10962 * 21 19 18 23 23 C 1.38997 * 120.74992 * 179.67885 * 22 21 19 24 24 C 1.36339 * 121.18902 * 0.65593 * 23 22 21 25 25 C 1.40354 * 119.93218 * 359.65388 * 24 23 22 26 26 C 1.40685 * 122.10305 * 180.02562 * 25 24 23 27 27 C 1.36265 * 118.66390 * 179.97438 * 26 25 24 28 28 N 1.32507 * 121.84108 * 359.97438 * 27 26 25 29 29 C 1.31309 * 122.72082 * 359.97438 * 28 27 26 30 30 C 1.40131 * 119.91990 * 0.02562 * 29 28 27 31 31 H 1.08991 * 109.47456 * 179.97438 * 1 2 3 32 32 H 1.09001 * 109.46624 * 299.97194 * 1 2 3 33 33 H 1.09000 * 109.46741 * 59.96378 * 1 2 3 34 34 H 1.08996 * 109.49740 * 301.33278 * 4 2 1 35 35 H 1.09001 * 109.49554 * 61.43003 * 4 2 1 36 36 H 1.09001 * 109.58379 * 185.57711 * 5 4 2 37 37 H 1.08994 * 109.70646 * 65.22265 * 5 4 2 38 38 H 0.96995 * 119.99898 * 180.02562 * 10 9 7 39 39 H 1.08999 * 109.58134 * 186.60365 * 15 6 5 40 40 H 1.09003 * 109.59097 * 66.17729 * 15 6 5 41 41 H 0.97004 * 119.99706 * 334.99818 * 18 16 2 42 42 H 1.07999 * 119.62173 * 0.02562 * 22 21 19 43 43 H 1.07999 * 119.40655 * 180.30833 * 23 22 21 44 44 H 1.08006 * 120.03934 * 179.67483 * 24 23 22 45 45 H 1.07997 * 120.66678 * 359.95387 * 26 25 24 46 46 H 1.07999 * 119.07832 * 180.02562 * 27 26 25 47 47 H 1.08004 * 120.03920 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0399 -0.7207 1.2501 5 6 3.5714 -0.6886 1.2642 6 7 4.0678 -1.2490 0.0000 7 6 4.9757 -2.2742 0.0000 8 1 4.9890 -2.9837 -0.8141 9 6 5.8788 -2.4014 1.0464 10 7 6.4804 -3.5525 1.2602 11 14 6.2404 -0.9392 2.1512 12 1 5.2934 -0.9369 3.2950 13 1 7.6319 -1.0359 2.6607 14 1 6.0833 0.3177 1.3761 15 6 3.5713 -0.6888 -1.2643 16 6 2.0398 -0.7209 -1.2501 17 1 1.6567 -0.2212 -2.1398 18 7 1.5800 -2.1117 -1.2342 19 6 1.4514 -2.7922 -2.3904 20 8 1.7166 -2.2517 -3.4466 21 6 0.9877 -4.1931 -2.3745 22 6 0.7984 -4.8568 -1.1713 23 6 0.3555 -6.1741 -1.1484 24 6 0.1073 -6.8558 -2.3028 25 6 0.2919 -6.2242 -3.5425 26 6 0.0492 -6.8839 -4.7612 27 6 0.2509 -6.2033 -5.9243 28 7 0.6664 -4.9451 -5.9350 29 6 0.9111 -4.2690 -4.8362 30 6 0.7346 -4.8783 -3.5867 31 1 -0.3634 -1.0276 -0.0005 32 1 -0.3632 0.5134 0.8903 33 1 -0.3633 0.5144 -0.8897 34 1 1.6573 -0.2207 2.1398 35 1 1.6977 -1.7556 1.2384 36 1 3.9417 -1.2845 2.0984 37 1 3.9165 0.3400 1.3684 38 1 7.1112 -3.6415 1.9916 39 1 3.9416 -1.2848 -2.0984 40 1 3.9143 0.3408 -1.3675 41 1 1.3682 -2.5429 -0.3915 42 1 0.9920 -4.3424 -0.2416 43 1 0.2106 -6.6685 -0.1991 44 1 -0.2313 -7.8806 -2.2634 45 1 -0.2899 -7.9091 -4.7745 46 1 0.0663 -6.7031 -6.8637 47 1 1.2488 -3.2449 -4.8955 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000968492962.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:26:53 Heat of formation + Delta-G solvation = 48.942892 kcal Electronic energy + Delta-G solvation = -30085.694903 eV Core-core repulsion = 26234.049455 eV Total energy + Delta-G solvation = -3851.645448 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -41.07987 -39.72869 -37.95073 -37.15368 -34.48759 -33.16637 -32.80696 -31.45631 -31.20211 -30.31215 -29.14959 -27.61764 -24.81651 -23.99668 -23.52519 -23.36217 -22.57238 -21.37673 -20.68703 -19.07109 -18.14538 -17.71705 -16.83112 -16.62425 -16.23610 -15.59138 -15.28937 -15.05846 -14.94284 -14.61787 -14.14857 -13.99127 -13.86160 -13.62898 -13.55457 -13.41485 -13.29539 -12.71349 -12.56832 -12.35800 -12.11941 -12.10366 -11.98418 -11.66653 -11.65024 -11.49989 -11.27950 -10.73801 -10.65913 -10.29184 -10.17913 -9.97108 -9.75994 -9.65952 -9.49388 -9.29451 -9.19194 -8.93039 -8.53478 -8.11989 -6.96160 -5.97959 -3.36197 0.08667 0.84618 1.62739 2.75648 3.26710 3.30709 3.41359 3.45510 3.47948 4.11237 4.44465 4.49115 4.52167 4.64710 4.71799 4.83928 4.88300 4.91567 4.94770 5.01935 5.06404 5.13841 5.23641 5.38199 5.51542 5.64518 5.67387 5.67917 5.69131 5.79642 5.88556 5.92115 5.97271 6.02108 6.05168 6.11918 6.17604 6.24816 6.27021 6.32701 6.47722 6.57550 6.59891 6.64863 6.69365 6.76596 6.92713 7.74978 7.95064 8.03838 8.30863 8.43471 8.91571 9.68776 10.06047 11.18038 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.013314 B = 0.003721 C = 0.003402 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2102.598134 B = 7523.781241 C = 8227.329358 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.095 4.095 3 H 0.081 0.919 4 C -0.130 4.130 5 C 0.122 3.878 6 N -0.602 5.602 7 C -0.256 4.256 8 H 0.083 0.917 9 C 0.025 3.975 10 N -0.909 5.909 11 Si 0.884 3.116 12 H -0.289 1.289 13 H -0.304 1.304 14 H -0.272 1.272 15 C 0.136 3.864 16 C 0.133 3.867 17 H 0.086 0.914 18 N -0.689 5.689 19 C 0.562 3.438 20 O -0.542 6.542 21 C -0.093 4.093 22 C -0.074 4.074 23 C -0.102 4.102 24 C -0.093 4.093 25 C -0.031 4.031 26 C -0.165 4.165 27 C 0.075 3.925 28 N -0.493 5.493 29 C 0.148 3.852 30 C -0.078 4.078 31 H 0.052 0.948 32 H 0.053 0.947 33 H 0.052 0.948 34 H 0.059 0.941 35 H 0.059 0.941 36 H 0.074 0.926 37 H 0.025 0.975 38 H 0.262 0.738 39 H 0.070 0.930 40 H 0.033 0.967 41 H 0.400 0.600 42 H 0.134 0.866 43 H 0.134 0.866 44 H 0.133 0.867 45 H 0.136 0.864 46 H 0.150 0.850 47 H 0.201 0.799 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.159 -2.398 -3.866 17.752 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.114 4.114 3 H 0.099 0.901 4 C -0.169 4.169 5 C -0.004 4.004 6 N -0.325 5.325 7 C -0.384 4.384 8 H 0.100 0.900 9 C -0.174 4.174 10 N -0.551 5.551 11 Si 0.715 3.285 12 H -0.216 1.216 13 H -0.233 1.233 14 H -0.197 1.197 15 C 0.009 3.991 16 C 0.027 3.973 17 H 0.104 0.896 18 N -0.339 5.339 19 C 0.349 3.651 20 O -0.422 6.422 21 C -0.098 4.098 22 C -0.093 4.093 23 C -0.122 4.122 24 C -0.111 4.111 25 C -0.036 4.036 26 C -0.185 4.185 27 C -0.069 4.069 28 N -0.202 5.202 29 C -0.022 4.022 30 C -0.081 4.081 31 H 0.071 0.929 32 H 0.072 0.928 33 H 0.071 0.929 34 H 0.077 0.923 35 H 0.078 0.922 36 H 0.092 0.908 37 H 0.043 0.957 38 H 0.072 0.928 39 H 0.089 0.911 40 H 0.051 0.949 41 H 0.237 0.763 42 H 0.152 0.848 43 H 0.152 0.848 44 H 0.151 0.849 45 H 0.154 0.846 46 H 0.167 0.833 47 H 0.217 0.783 Dipole moment (debyes) X Y Z Total from point charges -16.738 -1.810 -5.394 17.679 hybrid contribution 0.220 -0.127 2.145 2.160 sum -16.518 -1.937 -3.249 16.946 Atomic orbital electron populations 1.21843 0.95453 1.01605 1.01314 1.21334 0.95111 0.99926 0.95038 0.90061 1.22087 0.98667 0.99850 0.96325 1.21393 0.91478 0.97110 0.90396 1.44311 1.48899 1.40264 0.99062 1.18863 1.08583 1.01930 1.09020 0.89971 1.25327 0.97012 0.96617 0.98425 1.69824 1.30933 1.22883 1.31500 0.86952 0.76239 0.84960 0.80346 1.21647 1.23273 1.19704 1.21359 0.90407 0.97319 0.90047 1.21605 0.97044 0.80656 0.97952 0.89572 1.45792 1.65863 1.13925 1.08322 1.17950 0.77671 0.85224 0.84270 1.90527 1.51941 1.69594 1.30132 1.19957 1.02200 0.94536 0.93142 1.21491 0.95496 0.94943 0.97380 1.20921 0.98076 0.94241 0.98923 1.21121 0.98855 0.99905 0.91227 1.18154 0.97987 0.93001 0.94453 1.21838 1.03221 1.01066 0.92383 1.22281 0.95733 0.90882 0.97974 1.67670 1.11776 1.08452 1.32259 1.24648 0.90222 1.01607 0.85717 1.18853 1.00725 0.93781 0.94763 0.92913 0.92820 0.92867 0.92275 0.92246 0.90787 0.95682 0.92801 0.91129 0.94932 0.76304 0.84845 0.84786 0.84866 0.84616 0.83284 0.78276 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.57 9.05 37.16 0.34 -1.24 16 2 C -0.10 -1.27 2.48 -90.57 -0.22 -1.49 16 3 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 4 C -0.13 -1.94 5.20 -26.61 -0.14 -2.08 16 5 C 0.12 2.41 4.21 -3.71 -0.02 2.40 16 6 N -0.60 -13.31 2.66 -172.32 -0.46 -13.77 16 7 C -0.26 -6.86 10.02 -15.06 -0.15 -7.02 16 8 H 0.08 2.45 8.06 -52.48 -0.42 2.02 16 9 C 0.03 0.70 5.24 -17.43 -0.09 0.61 16 10 N -0.91 -27.22 13.97 55.49 0.78 -26.44 16 11 Si 0.88 21.78 24.35 -169.99 -4.14 17.64 16 12 H -0.29 -6.76 6.53 56.52 0.37 -6.39 16 13 H -0.30 -7.75 7.11 56.52 0.40 -7.35 16 14 H -0.27 -6.63 6.80 56.52 0.38 -6.24 16 15 C 0.14 2.61 6.12 -3.71 -0.02 2.59 16 16 C 0.13 2.06 2.24 -67.81 -0.15 1.90 16 17 H 0.09 1.31 7.58 -51.93 -0.39 0.91 16 18 N -0.69 -10.43 4.20 -54.72 -0.23 -10.66 16 19 C 0.56 9.18 7.70 -12.46 -0.10 9.09 16 20 O -0.54 -9.95 13.13 5.29 0.07 -9.88 16 21 C -0.09 -1.39 5.90 -104.66 -0.62 -2.01 16 22 C -0.07 -0.93 9.51 -39.13 -0.37 -1.30 16 23 C -0.10 -1.09 9.93 -39.98 -0.40 -1.48 16 24 C -0.09 -0.98 9.79 -39.47 -0.39 -1.36 16 25 C -0.03 -0.40 5.74 -106.84 -0.61 -1.01 16 26 C -0.17 -1.84 9.88 -39.37 -0.39 -2.23 16 27 C 0.07 0.92 11.07 -17.97 -0.20 0.72 16 28 N -0.49 -7.53 10.30 -13.22 -0.14 -7.67 16 29 C 0.15 2.36 10.49 -17.06 -0.18 2.18 16 30 C -0.08 -1.18 5.76 -106.59 -0.61 -1.80 16 31 H 0.05 0.56 7.54 -51.93 -0.39 0.17 16 32 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 33 H 0.05 0.56 8.14 -51.93 -0.42 0.13 16 34 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 35 H 0.06 0.87 6.40 -51.93 -0.33 0.54 16 36 H 0.07 1.63 4.62 -51.93 -0.24 1.39 16 37 H 0.03 0.50 7.12 -51.93 -0.37 0.13 16 38 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 39 H 0.07 1.51 7.93 -51.93 -0.41 1.10 16 40 H 0.03 0.61 8.14 -51.93 -0.42 0.18 16 41 H 0.40 5.61 4.71 -40.82 -0.19 5.42 16 42 H 0.13 1.52 6.42 -52.49 -0.34 1.18 16 43 H 0.13 1.05 8.06 -52.49 -0.42 0.63 16 44 H 0.13 0.99 8.06 -52.48 -0.42 0.57 16 45 H 0.14 1.05 8.06 -52.49 -0.42 0.63 16 46 H 0.15 1.36 8.06 -52.49 -0.42 0.93 16 47 H 0.20 3.38 4.97 -52.49 -0.26 3.12 16 LS Contribution 365.98 15.07 5.52 5.52 Total: -1.00 -32.21 365.98 -9.27 -41.48 By element: Atomic # 1 Polarization: 13.67 SS G_CDS: -6.34 Total: 7.33 kcal Atomic # 6 Polarization: 0.78 SS G_CDS: -4.32 Total: -3.54 kcal Atomic # 7 Polarization: -58.50 SS G_CDS: -0.05 Total: -58.55 kcal Atomic # 8 Polarization: -9.95 SS G_CDS: 0.07 Total: -9.88 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -4.14 Total: 17.64 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -32.21 -9.27 -41.48 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000968492962.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.421 kcal (2) G-P(sol) polarization free energy of solvation -32.209 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.212 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.269 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.478 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.943 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds