Wall clock time and date at job start Tue Mar 31 2020 22:26:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08997 * 109.46523 * 2 1 4 4 C 1.53042 * 109.45944 * 119.96486 * 2 1 3 5 5 C 1.53192 * 109.31092 * 181.38145 * 4 2 1 6 6 N 1.46930 * 108.77733 * 305.36183 * 5 4 2 7 7 C 1.36931 * 120.63043 * 233.62893 * 6 5 4 8 8 H 1.08003 * 119.99866 * 150.50242 * 7 6 5 9 9 C 1.38805 * 120.00381 * 330.50518 * 7 6 5 10 10 N 1.31626 * 120.00177 * 160.66740 * 9 7 6 11 11 Si 1.86805 * 119.99927 * 340.66542 * 9 7 6 12 12 H 1.48495 * 109.47120 * 89.92682 * 11 9 7 13 13 H 1.48499 * 109.47040 * 209.92872 * 11 9 7 14 14 H 1.48499 * 109.47142 * 329.92657 * 11 9 7 15 15 C 1.46928 * 118.73443 * 53.61225 * 6 5 4 16 16 C 1.53045 * 109.45754 * 240.02967 * 2 1 3 17 17 H 1.08998 * 109.49508 * 58.63029 * 16 2 1 18 18 N 1.46497 * 109.49896 * 298.56958 * 16 2 1 19 19 C 1.34769 * 120.00223 * 155.00125 * 18 16 2 20 20 O 1.21582 * 120.00104 * 359.97438 * 19 18 16 21 21 C 1.47572 * 120.00424 * 180.02562 * 19 18 16 22 22 C 1.38709 * 120.42915 * 354.10962 * 21 19 18 23 23 C 1.38997 * 120.74992 * 179.67885 * 22 21 19 24 24 C 1.36339 * 121.18902 * 0.65593 * 23 22 21 25 25 C 1.40354 * 119.93218 * 359.65388 * 24 23 22 26 26 C 1.40685 * 122.10305 * 180.02562 * 25 24 23 27 27 C 1.36265 * 118.66390 * 179.97438 * 26 25 24 28 28 N 1.32507 * 121.84108 * 359.97438 * 27 26 25 29 29 C 1.31309 * 122.72082 * 359.97438 * 28 27 26 30 30 C 1.40131 * 119.91990 * 0.02562 * 29 28 27 31 31 H 1.08991 * 109.47456 * 179.97438 * 1 2 3 32 32 H 1.09001 * 109.46624 * 299.97194 * 1 2 3 33 33 H 1.09000 * 109.46741 * 59.96378 * 1 2 3 34 34 H 1.08996 * 109.49740 * 301.33278 * 4 2 1 35 35 H 1.09001 * 109.49554 * 61.43003 * 4 2 1 36 36 H 1.09001 * 109.58379 * 185.57711 * 5 4 2 37 37 H 1.08994 * 109.70646 * 65.22265 * 5 4 2 38 38 H 0.96995 * 119.99898 * 180.02562 * 10 9 7 39 39 H 1.08999 * 109.58134 * 186.60365 * 15 6 5 40 40 H 1.09003 * 109.59097 * 66.17729 * 15 6 5 41 41 H 0.97004 * 119.99706 * 334.99818 * 18 16 2 42 42 H 1.07999 * 119.62173 * 0.02562 * 22 21 19 43 43 H 1.07999 * 119.40655 * 180.30833 * 23 22 21 44 44 H 1.08006 * 120.03934 * 179.67483 * 24 23 22 45 45 H 1.07997 * 120.66678 * 359.95387 * 26 25 24 46 46 H 1.07999 * 119.07832 * 180.02562 * 27 26 25 47 47 H 1.08004 * 120.03920 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0399 -0.7207 1.2501 5 6 3.5714 -0.6886 1.2642 6 7 4.0678 -1.2490 0.0000 7 6 4.9757 -2.2742 0.0000 8 1 4.9890 -2.9837 -0.8141 9 6 5.8788 -2.4014 1.0464 10 7 6.4804 -3.5525 1.2602 11 14 6.2404 -0.9392 2.1512 12 1 5.2934 -0.9369 3.2950 13 1 7.6319 -1.0359 2.6607 14 1 6.0833 0.3177 1.3761 15 6 3.5713 -0.6888 -1.2643 16 6 2.0398 -0.7209 -1.2501 17 1 1.6567 -0.2212 -2.1398 18 7 1.5800 -2.1117 -1.2342 19 6 1.4514 -2.7922 -2.3904 20 8 1.7166 -2.2517 -3.4466 21 6 0.9877 -4.1931 -2.3745 22 6 0.7984 -4.8568 -1.1713 23 6 0.3555 -6.1741 -1.1484 24 6 0.1073 -6.8558 -2.3028 25 6 0.2919 -6.2242 -3.5425 26 6 0.0492 -6.8839 -4.7612 27 6 0.2509 -6.2033 -5.9243 28 7 0.6664 -4.9451 -5.9350 29 6 0.9111 -4.2690 -4.8362 30 6 0.7346 -4.8783 -3.5867 31 1 -0.3634 -1.0276 -0.0005 32 1 -0.3632 0.5134 0.8903 33 1 -0.3633 0.5144 -0.8897 34 1 1.6573 -0.2207 2.1398 35 1 1.6977 -1.7556 1.2384 36 1 3.9417 -1.2845 2.0984 37 1 3.9165 0.3400 1.3684 38 1 7.1112 -3.6415 1.9916 39 1 3.9416 -1.2848 -2.0984 40 1 3.9143 0.3408 -1.3675 41 1 1.3682 -2.5429 -0.3915 42 1 0.9920 -4.3424 -0.2416 43 1 0.2106 -6.6685 -0.1991 44 1 -0.2313 -7.8806 -2.2634 45 1 -0.2899 -7.9091 -4.7745 46 1 0.0663 -6.7031 -6.8637 47 1 1.2488 -3.2449 -4.8955 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000968492962.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:26:51 Heat of formation + Delta-G solvation = 28.337010 kcal Electronic energy + Delta-G solvation = -30086.588441 eV Core-core repulsion = 26234.049455 eV Total energy + Delta-G solvation = -3852.538986 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -42.13277 -40.95959 -39.27895 -38.17014 -36.11978 -34.42938 -33.87413 -33.37633 -32.17675 -31.56407 -30.28790 -29.07857 -26.03690 -25.42378 -24.66618 -24.44650 -23.88659 -22.91408 -21.80832 -20.46978 -19.22144 -18.78344 -18.59529 -17.69528 -17.29686 -17.16987 -16.83468 -16.26906 -16.15442 -15.63739 -15.41824 -15.29050 -15.17696 -15.10459 -14.72481 -14.58051 -14.48501 -14.22968 -13.78862 -13.69483 -13.59918 -13.12839 -13.05871 -12.99921 -12.91989 -12.64176 -12.54972 -12.32683 -12.23007 -11.83535 -11.58902 -11.36762 -11.18146 -11.15940 -10.85438 -10.70834 -10.39473 -10.17748 -10.09508 -9.09826 -8.82171 -8.15125 -5.49011 -0.90758 -0.12498 0.59464 1.29634 1.43496 1.51930 1.73866 2.13640 2.27399 2.41987 3.08637 3.10097 3.31694 3.48408 3.55892 3.69078 3.75616 3.80156 3.86975 3.90703 3.95709 4.02105 4.18982 4.33363 4.39205 4.53179 4.53340 4.59496 4.67121 4.72453 4.76462 4.79829 4.87110 4.90488 4.96450 5.00407 5.03827 5.05708 5.15073 5.20029 5.21483 5.32820 5.38225 5.46524 5.60359 5.68014 5.79499 5.88931 6.13111 6.52854 6.93952 7.00232 7.20830 7.63308 8.03301 9.05136 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.013314 B = 0.003721 C = 0.003402 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2102.598134 B = 7523.781241 C = 8227.329358 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.086 4.086 3 H 0.092 0.908 4 C -0.121 4.121 5 C 0.115 3.885 6 N -0.611 5.611 7 C -0.239 4.239 8 H 0.035 0.965 9 C -0.031 4.031 10 N -0.958 5.958 11 Si 0.951 3.049 12 H -0.264 1.264 13 H -0.317 1.317 14 H -0.266 1.266 15 C 0.135 3.865 16 C 0.140 3.860 17 H 0.089 0.911 18 N -0.684 5.684 19 C 0.555 3.445 20 O -0.573 6.573 21 C -0.130 4.130 22 C -0.066 4.066 23 C -0.110 4.110 24 C -0.074 4.074 25 C -0.052 4.052 26 C -0.142 4.142 27 C 0.052 3.948 28 N -0.513 5.513 29 C 0.114 3.886 30 C -0.094 4.094 31 H 0.052 0.948 32 H 0.074 0.926 33 H 0.057 0.943 34 H 0.092 0.908 35 H 0.060 0.940 36 H 0.053 0.947 37 H 0.033 0.967 38 H 0.261 0.739 39 H 0.034 0.966 40 H 0.043 0.957 41 H 0.405 0.595 42 H 0.141 0.859 43 H 0.170 0.830 44 H 0.177 0.823 45 H 0.181 0.819 46 H 0.181 0.819 47 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.133 -2.996 -1.962 20.449 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.105 4.105 3 H 0.110 0.890 4 C -0.160 4.160 5 C -0.010 4.010 6 N -0.335 5.335 7 C -0.369 4.369 8 H 0.053 0.947 9 C -0.226 4.226 10 N -0.604 5.604 11 Si 0.780 3.220 12 H -0.190 1.190 13 H -0.246 1.246 14 H -0.191 1.191 15 C 0.008 3.992 16 C 0.034 3.966 17 H 0.107 0.893 18 N -0.334 5.334 19 C 0.343 3.657 20 O -0.455 6.455 21 C -0.135 4.135 22 C -0.085 4.085 23 C -0.128 4.128 24 C -0.092 4.092 25 C -0.057 4.057 26 C -0.161 4.161 27 C -0.091 4.091 28 N -0.222 5.222 29 C -0.055 4.055 30 C -0.097 4.097 31 H 0.072 0.928 32 H 0.093 0.907 33 H 0.076 0.924 34 H 0.110 0.890 35 H 0.079 0.921 36 H 0.071 0.929 37 H 0.051 0.949 38 H 0.070 0.930 39 H 0.053 0.947 40 H 0.061 0.939 41 H 0.244 0.756 42 H 0.159 0.841 43 H 0.187 0.813 44 H 0.194 0.806 45 H 0.199 0.801 46 H 0.198 0.802 47 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges -19.763 -2.365 -3.477 20.206 hybrid contribution 1.115 -0.079 1.433 1.818 sum -18.648 -2.445 -2.043 18.918 Atomic orbital electron populations 1.21766 0.92922 1.02115 1.02604 1.21304 0.97039 0.99665 0.92528 0.88964 1.21999 0.94700 1.00813 0.98502 1.21502 0.94935 0.96496 0.88022 1.44326 1.48491 1.39616 1.01087 1.18631 1.09309 1.01824 1.07137 0.94723 1.25922 0.97206 0.98878 1.00563 1.69964 1.32459 1.25028 1.32960 0.85873 0.75549 0.81342 0.79239 1.18999 1.24649 1.19122 1.21414 0.93278 0.96750 0.87713 1.21482 0.93956 0.81347 0.99791 0.89329 1.45744 1.65542 1.13847 1.08311 1.18372 0.77139 0.86115 0.84040 1.90515 1.53289 1.70507 1.31210 1.19893 1.05277 0.94026 0.94306 1.21768 0.93996 0.96042 0.96668 1.21333 0.97485 0.93255 1.00765 1.21623 0.96288 1.01419 0.89821 1.18571 0.98429 0.92238 0.96502 1.22323 1.00300 1.02528 0.90997 1.22842 0.96139 0.90050 1.00111 1.67576 1.12035 1.10227 1.32332 1.24288 0.92948 1.01362 0.86918 1.18981 1.01288 0.95235 0.94208 0.92847 0.90682 0.92440 0.88982 0.92121 0.92906 0.94916 0.93049 0.94750 0.93867 0.75630 0.84087 0.81266 0.80561 0.80136 0.80223 0.80681 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.52 9.05 71.98 0.65 -1.86 16 2 C -0.09 -2.08 2.48 -10.76 -0.03 -2.11 16 3 H 0.09 2.09 8.14 -2.39 -0.02 2.07 16 4 C -0.12 -3.26 5.20 30.67 0.16 -3.10 16 5 C 0.11 4.35 4.21 86.36 0.36 4.71 16 6 N -0.61 -27.39 2.66 -699.10 -1.86 -29.25 16 7 C -0.24 -13.41 10.02 84.03 0.84 -12.57 16 8 H 0.03 2.24 8.06 -2.91 -0.02 2.21 16 9 C -0.03 -1.78 5.24 84.86 0.44 -1.33 16 10 N -0.96 -59.55 13.97 21.65 0.30 -59.24 16 11 Si 0.95 45.50 24.35 68.60 1.67 47.17 16 12 H -0.26 -11.48 6.53 99.48 0.65 -10.83 16 13 H -0.32 -15.75 7.11 99.48 0.71 -15.05 16 14 H -0.27 -12.35 6.80 99.48 0.68 -11.68 16 15 C 0.13 5.35 6.12 86.36 0.53 5.88 16 16 C 0.14 4.33 2.24 45.07 0.10 4.43 16 17 H 0.09 2.73 7.58 -2.39 -0.02 2.71 16 18 N -0.68 -21.24 4.20 -445.31 -1.87 -23.11 16 19 C 0.55 19.40 7.70 86.71 0.67 20.07 16 20 O -0.57 -23.12 13.13 -3.97 -0.05 -23.17 16 21 C -0.13 -4.04 5.90 -19.89 -0.12 -4.16 16 22 C -0.07 -1.61 9.51 22.56 0.21 -1.40 16 23 C -0.11 -2.00 9.93 22.01 0.22 -1.79 16 24 C -0.07 -1.28 9.79 22.34 0.22 -1.07 16 25 C -0.05 -1.25 5.74 -21.30 -0.12 -1.37 16 26 C -0.14 -2.78 9.88 22.41 0.22 -2.56 16 27 C 0.05 1.22 11.07 84.13 0.93 2.15 16 28 N -0.51 -16.38 10.30 -195.73 -2.02 -18.39 16 29 C 0.11 3.95 10.49 85.23 0.89 4.84 16 30 C -0.09 -2.96 5.76 -21.14 -0.12 -3.08 16 31 H 0.05 0.99 7.54 -2.39 -0.02 0.97 16 32 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 33 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 34 H 0.09 1.96 8.14 -2.39 -0.02 1.94 16 35 H 0.06 1.63 6.40 -2.39 -0.02 1.62 16 36 H 0.05 2.23 4.62 -2.39 -0.01 2.22 16 37 H 0.03 1.21 7.12 -2.39 -0.02 1.19 16 38 H 0.26 15.42 8.31 -92.71 -0.77 14.65 16 39 H 0.03 1.58 7.93 -2.39 -0.02 1.56 16 40 H 0.04 1.62 8.14 -2.39 -0.02 1.60 16 41 H 0.41 11.32 4.71 -92.71 -0.44 10.88 16 42 H 0.14 3.10 6.42 -2.91 -0.02 3.08 16 43 H 0.17 1.90 8.06 -2.91 -0.02 1.88 16 44 H 0.18 1.54 8.06 -2.91 -0.02 1.52 16 45 H 0.18 1.83 8.06 -2.91 -0.02 1.80 16 46 H 0.18 2.89 8.06 -2.91 -0.02 2.87 16 47 H 0.18 6.77 4.97 -2.93 -0.01 6.76 16 Total: -1.00 -76.93 365.98 2.72 -74.20 By element: Atomic # 1 Polarization: 25.62 SS G_CDS: 0.48 Total: 26.10 kcal Atomic # 6 Polarization: -0.37 SS G_CDS: 6.07 Total: 5.69 kcal Atomic # 7 Polarization: -124.55 SS G_CDS: -5.44 Total: -129.99 kcal Atomic # 8 Polarization: -23.12 SS G_CDS: -0.05 Total: -23.17 kcal Atomic # 14 Polarization: 45.50 SS G_CDS: 1.67 Total: 47.17 kcal Total: -76.93 2.72 -74.20 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000968492962.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.542 kcal (2) G-P(sol) polarization free energy of solvation -76.927 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.615 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.722 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.205 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.337 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds