Wall clock time and date at job start Tue Mar 31 2020 22:25:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08991 * 109.46670 * 2 1 4 4 C 1.53349 * 109.41565 * 240.09708 * 2 1 3 5 5 C 1.53194 * 109.14918 * 178.67647 * 4 2 1 6 6 N 1.46934 * 108.89214 * 54.57866 * 5 4 2 7 7 C 1.36935 * 120.62776 * 126.34278 * 6 5 4 8 8 H 1.08003 * 120.00334 * 331.82288 * 7 6 5 9 9 C 1.38816 * 120.00109 * 151.82327 * 7 6 5 10 10 N 1.31624 * 119.99356 * 343.07479 * 9 7 6 11 11 Si 1.86793 * 120.00395 * 163.07501 * 9 7 6 12 12 H 1.48500 * 109.47341 * 59.99642 * 11 9 7 13 13 H 1.48504 * 109.47235 * 180.02562 * 11 9 7 14 14 H 1.48504 * 109.46651 * 299.99824 * 11 9 7 15 15 C 1.46917 * 118.73910 * 306.32295 * 6 5 4 16 16 C 1.53042 * 109.45796 * 119.97381 * 2 1 3 17 17 H 1.08999 * 109.52559 * 301.34719 * 16 2 1 18 18 N 1.46498 * 109.50153 * 61.43341 * 16 2 1 19 19 C 1.34781 * 120.00195 * 204.83823 * 18 16 2 20 20 O 1.21558 * 119.99846 * 359.97438 * 19 18 16 21 21 C 1.47774 * 119.99827 * 179.97438 * 19 18 16 22 22 C 1.40650 * 119.70215 * 359.72594 * 21 19 18 23 23 C 1.35848 * 120.87928 * 179.74927 * 22 21 19 24 24 C 1.40401 * 119.84177 * 0.52147 * 23 22 21 25 25 C 1.40637 * 121.98166 * 179.75756 * 24 23 22 26 26 C 1.36224 * 118.73089 * 179.97438 * 25 24 23 27 27 N 1.32594 * 121.90174 * 359.97438 * 26 25 24 28 28 C 1.31236 * 122.74213 * 0.04860 * 27 26 25 29 29 C 1.40556 * 119.88362 * 359.95068 * 28 27 26 30 30 C 1.38564 * 119.69482 * 180.02562 * 21 19 18 31 31 H 1.09000 * 109.46817 * 300.02558 * 1 2 3 32 32 H 1.08991 * 109.47274 * 60.02564 * 1 2 3 33 33 H 1.08995 * 109.47589 * 180.02562 * 1 2 3 34 34 H 1.08996 * 109.68610 * 58.71674 * 4 2 1 35 35 H 1.09002 * 109.47692 * 298.51393 * 4 2 1 36 36 H 1.09003 * 109.58905 * 294.72177 * 5 4 2 37 37 H 1.09001 * 109.58865 * 174.43764 * 5 4 2 38 38 H 0.96997 * 119.99488 * 180.02562 * 10 9 7 39 39 H 1.09003 * 109.58812 * 173.39821 * 15 6 5 40 40 H 1.09007 * 109.58397 * 293.82038 * 15 6 5 41 41 H 0.97007 * 119.99694 * 24.83354 * 18 16 2 42 42 H 1.08001 * 119.56091 * 0.02562 * 22 21 19 43 43 H 1.07998 * 120.08190 * 180.26368 * 23 22 21 44 44 H 1.08003 * 120.63015 * 359.96093 * 25 24 23 45 45 H 1.07994 * 119.04632 * 180.02562 * 26 25 24 46 46 H 1.07998 * 120.06132 * 179.97438 * 28 27 26 47 47 H 1.07998 * 120.34948 * 359.95593 * 30 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0276 0.0000 4 6 2.0398 -0.7210 -1.2537 5 6 3.5713 -0.6886 -1.2643 6 7 4.0678 -1.2490 -0.0001 7 6 4.9763 -2.2735 -0.0002 8 1 5.0042 -2.9704 -0.8249 9 6 5.8614 -2.4166 1.0595 10 7 6.0659 -1.4128 1.8861 11 14 6.7622 -4.0332 1.3125 12 1 7.5860 -4.3338 0.1141 13 1 7.6415 -3.9287 2.5047 14 1 5.7747 -5.1228 1.5204 15 6 3.5714 -0.6889 1.2642 16 6 2.0398 -0.7209 1.2500 17 1 1.6572 -0.2215 2.1401 18 7 1.5801 -2.1118 1.2341 19 6 1.4546 -2.7934 2.3900 20 8 1.7234 -2.2542 3.4458 21 6 0.9904 -4.1963 2.3739 22 6 0.6756 -4.8122 1.1492 23 6 0.2515 -6.1020 1.1062 24 6 0.1132 -6.8321 2.2974 25 6 -0.3269 -8.1678 2.3056 26 6 -0.4367 -8.8138 3.4999 27 7 -0.1408 -8.2196 4.6477 28 6 0.2749 -6.9768 4.7171 29 6 0.4226 -6.2210 3.5413 30 6 0.8631 -4.8909 3.5661 31 1 -0.3633 0.5142 0.8898 32 1 -0.3633 0.5134 -0.8901 33 1 -0.3634 -1.0276 0.0005 34 1 1.6592 -0.2217 -2.1447 35 1 1.6979 -1.7560 -1.2421 36 1 3.9143 0.3410 -1.3673 37 1 3.9437 -1.2829 -2.0987 38 1 6.6846 -1.5126 2.6264 39 1 3.9417 -1.2849 2.0983 40 1 3.9143 0.3407 1.3673 41 1 1.3659 -2.5422 0.3915 42 1 0.7766 -4.2536 0.2304 43 1 0.0174 -6.5635 0.1582 44 1 -0.5732 -8.6717 1.3826 45 1 -0.7737 -9.8397 3.5121 46 1 0.5035 -6.5355 5.6760 47 1 1.1020 -4.4127 4.5045 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000968504786.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:25:44 Heat of formation + Delta-G solvation = 37.363689 kcal Electronic energy + Delta-G solvation = -29888.346045 eV Core-core repulsion = 26036.198485 eV Total energy + Delta-G solvation = -3852.147560 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -40.96810 -39.66847 -37.88269 -36.76102 -34.18981 -33.10122 -32.95510 -31.42423 -30.98891 -29.87715 -29.04723 -27.35220 -24.87723 -24.05686 -23.95555 -22.53853 -22.09038 -21.13412 -20.89613 -18.76646 -18.30094 -17.81945 -16.89612 -16.53152 -15.89806 -15.24407 -15.06310 -14.97792 -14.56708 -14.30253 -14.10314 -13.84045 -13.81416 -13.71643 -13.63173 -13.30231 -13.21181 -13.00700 -12.60515 -12.05148 -12.02760 -11.96185 -11.61731 -11.41711 -11.35022 -11.11835 -10.92793 -10.72887 -10.55036 -10.31909 -10.25951 -9.95368 -9.78856 -9.69422 -9.54660 -9.39678 -9.21481 -8.46956 -8.43360 -8.16988 -6.66027 -5.77981 -3.21273 0.14146 0.63004 1.72167 2.61092 3.37431 3.44453 3.45225 3.51211 3.65938 4.06482 4.23796 4.38996 4.49334 4.55592 4.65704 4.86943 4.92689 5.06515 5.09372 5.18329 5.20239 5.31392 5.40567 5.42394 5.52962 5.56473 5.65363 5.78612 5.83652 5.86397 5.89066 5.97446 6.11194 6.21414 6.21629 6.26105 6.32973 6.40839 6.45875 6.50909 6.61019 6.63104 6.71575 6.85083 6.95869 7.34434 7.65438 7.78948 7.79254 8.03280 8.45711 8.70324 9.20568 9.84586 10.40255 11.29921 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.010515 B = 0.004138 C = 0.003430 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2662.253260 B = 6764.534722 C = 8160.659873 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.094 4.094 3 H 0.079 0.921 4 C -0.129 4.129 5 C 0.142 3.858 6 N -0.587 5.587 7 C -0.256 4.256 8 H 0.063 0.937 9 C 0.010 3.990 10 N -0.897 5.897 11 Si 0.896 3.104 12 H -0.283 1.283 13 H -0.290 1.290 14 H -0.285 1.285 15 C 0.160 3.840 16 C 0.125 3.875 17 H 0.077 0.923 18 N -0.690 5.690 19 C 0.554 3.446 20 O -0.541 6.541 21 C -0.121 4.121 22 C -0.064 4.064 23 C -0.121 4.121 24 C -0.011 4.011 25 C -0.160 4.160 26 C 0.078 3.922 27 N -0.495 5.495 28 C 0.158 3.842 29 C -0.121 4.121 30 C -0.023 4.023 31 H 0.050 0.950 32 H 0.050 0.950 33 H 0.050 0.950 34 H 0.055 0.945 35 H 0.052 0.948 36 H 0.018 0.982 37 H 0.053 0.947 38 H 0.255 0.745 39 H 0.097 0.903 40 H 0.026 0.974 41 H 0.394 0.606 42 H 0.131 0.869 43 H 0.135 0.865 44 H 0.138 0.862 45 H 0.152 0.848 46 H 0.166 0.834 47 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.701 -6.921 -2.568 17.350 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.113 4.113 3 H 0.097 0.903 4 C -0.168 4.168 5 C 0.015 3.985 6 N -0.309 5.309 7 C -0.386 4.386 8 H 0.080 0.920 9 C -0.190 4.190 10 N -0.540 5.540 11 Si 0.726 3.274 12 H -0.209 1.209 13 H -0.216 1.216 14 H -0.211 1.211 15 C 0.034 3.966 16 C 0.020 3.980 17 H 0.095 0.905 18 N -0.340 5.340 19 C 0.340 3.660 20 O -0.420 6.420 21 C -0.124 4.124 22 C -0.084 4.084 23 C -0.139 4.139 24 C -0.016 4.016 25 C -0.179 4.179 26 C -0.065 4.065 27 N -0.203 5.203 28 C -0.014 4.014 29 C -0.124 4.124 30 C -0.044 4.044 31 H 0.070 0.930 32 H 0.069 0.931 33 H 0.069 0.931 34 H 0.073 0.927 35 H 0.071 0.929 36 H 0.036 0.964 37 H 0.072 0.928 38 H 0.065 0.935 39 H 0.115 0.885 40 H 0.044 0.956 41 H 0.230 0.770 42 H 0.148 0.852 43 H 0.153 0.847 44 H 0.156 0.844 45 H 0.169 0.831 46 H 0.184 0.816 47 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -15.498 -7.105 -1.015 17.079 hybrid contribution 0.656 -0.586 -1.181 1.472 sum -14.842 -7.691 -2.196 16.860 Atomic orbital electron populations 1.21850 0.95989 1.01313 1.01036 1.21373 0.94581 0.99964 0.95420 0.90315 1.22137 0.99306 0.99261 0.96113 1.20933 0.90652 0.96592 0.90308 1.43961 1.48265 1.39590 0.99113 1.19018 1.09884 1.03032 1.06623 0.91972 1.24994 0.97083 0.97083 0.99835 1.69983 1.37161 1.28931 1.17950 0.86481 0.79439 0.84152 0.77375 1.20926 1.21557 1.21109 1.21205 0.86577 0.97839 0.91015 1.21838 0.99036 0.80162 0.96992 0.90455 1.45747 1.66198 1.14099 1.07992 1.18008 0.78152 0.85318 0.84475 1.90757 1.50866 1.69598 1.30743 1.20141 1.03022 0.95375 0.93897 1.21084 0.95003 0.95036 0.97274 1.20823 1.01559 0.94337 0.97185 1.18274 0.96075 0.94028 0.93245 1.21905 1.01773 0.94180 1.00068 1.22204 0.96652 1.00010 0.87614 1.67463 1.11776 1.11318 1.29733 1.23315 0.91563 0.89154 0.97337 1.19009 1.03264 0.95537 0.94549 1.21456 0.92451 0.91596 0.98867 0.93041 0.93107 0.93133 0.92672 0.92924 0.96405 0.92845 0.93510 0.88476 0.95614 0.77008 0.85164 0.84689 0.84426 0.83076 0.81642 0.83378 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.76 9.05 37.16 0.34 -1.43 16 2 C -0.09 -1.41 2.48 -90.42 -0.22 -1.63 16 3 H 0.08 1.19 8.14 -51.93 -0.42 0.77 16 4 C -0.13 -1.93 5.23 -26.45 -0.14 -2.07 16 5 C 0.14 2.73 6.50 -3.71 -0.02 2.71 16 6 N -0.59 -13.84 2.91 -172.31 -0.50 -14.34 16 7 C -0.26 -6.80 9.58 -15.06 -0.14 -6.95 16 8 H 0.06 1.62 7.89 -52.48 -0.41 1.21 16 9 C 0.01 0.26 4.92 -17.43 -0.09 0.18 16 10 N -0.90 -26.25 11.20 55.49 0.62 -25.63 16 11 Si 0.90 22.09 29.59 -169.99 -5.03 17.06 16 12 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 13 H -0.29 -7.27 7.11 56.52 0.40 -6.86 16 14 H -0.28 -7.03 7.11 56.52 0.40 -6.63 16 15 C 0.16 3.75 4.90 -3.71 -0.02 3.73 16 16 C 0.13 2.30 2.24 -67.81 -0.15 2.15 16 17 H 0.08 1.47 7.58 -51.93 -0.39 1.08 16 18 N -0.69 -11.87 4.20 -54.65 -0.23 -12.10 16 19 C 0.55 10.28 7.73 -12.36 -0.10 10.18 16 20 O -0.54 -11.83 15.96 5.31 0.08 -11.74 16 21 C -0.12 -1.89 5.87 -104.97 -0.62 -2.50 16 22 C -0.06 -0.83 9.44 -39.53 -0.37 -1.20 16 23 C -0.12 -1.38 9.77 -39.62 -0.39 -1.76 16 24 C -0.01 -0.13 5.75 -106.74 -0.61 -0.75 16 25 C -0.16 -1.62 9.87 -39.40 -0.39 -2.01 16 26 C 0.08 0.82 11.07 -17.95 -0.20 0.62 16 27 N -0.49 -6.15 10.30 -13.12 -0.14 -6.28 16 28 C 0.16 1.89 11.05 -16.93 -0.19 1.70 16 29 C -0.12 -1.60 5.74 -106.87 -0.61 -2.21 16 30 C -0.02 -0.33 9.37 -38.75 -0.36 -0.69 16 31 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 32 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 33 H 0.05 0.60 7.54 -51.93 -0.39 0.21 16 34 H 0.05 0.71 8.14 -51.93 -0.42 0.28 16 35 H 0.05 0.77 6.41 -51.93 -0.33 0.43 16 36 H 0.02 0.36 8.14 -51.93 -0.42 -0.07 16 37 H 0.05 1.02 7.93 -51.93 -0.41 0.60 16 38 H 0.25 7.34 8.31 -40.82 -0.34 7.00 16 39 H 0.10 2.70 6.06 -51.93 -0.31 2.38 16 40 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 41 H 0.39 5.98 4.62 -40.82 -0.19 5.80 16 42 H 0.13 1.46 6.34 -52.49 -0.33 1.13 16 43 H 0.14 1.13 8.06 -52.49 -0.42 0.71 16 44 H 0.14 0.99 8.06 -52.48 -0.42 0.57 16 45 H 0.15 1.15 8.06 -52.49 -0.42 0.72 16 46 H 0.17 1.54 8.06 -52.49 -0.42 1.12 16 47 H 0.15 2.07 7.61 -52.49 -0.40 1.67 16 LS Contribution 377.41 15.07 5.69 5.69 Total: -1.00 -32.72 377.41 -10.33 -43.05 By element: Atomic # 1 Polarization: 12.76 SS G_CDS: -6.54 Total: 6.22 kcal Atomic # 6 Polarization: 2.36 SS G_CDS: -4.29 Total: -1.93 kcal Atomic # 7 Polarization: -58.11 SS G_CDS: -0.25 Total: -58.35 kcal Atomic # 8 Polarization: -11.83 SS G_CDS: 0.08 Total: -11.74 kcal Atomic # 14 Polarization: 22.09 SS G_CDS: -5.03 Total: 17.06 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -32.72 -10.33 -43.05 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000968504786.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.413 kcal (2) G-P(sol) polarization free energy of solvation -32.718 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.696 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.332 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.050 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.364 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds