Wall clock time and date at job start Tue Mar 31 2020 22:25:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08991 * 109.46670 * 2 1 4 4 C 1.53349 * 109.41565 * 240.09708 * 2 1 3 5 5 C 1.53194 * 109.14918 * 178.67647 * 4 2 1 6 6 N 1.46934 * 108.89214 * 54.57866 * 5 4 2 7 7 C 1.36935 * 120.62776 * 126.34278 * 6 5 4 8 8 H 1.08003 * 120.00334 * 331.82288 * 7 6 5 9 9 C 1.38816 * 120.00109 * 151.82327 * 7 6 5 10 10 N 1.31624 * 119.99356 * 343.07479 * 9 7 6 11 11 Si 1.86793 * 120.00395 * 163.07501 * 9 7 6 12 12 H 1.48500 * 109.47341 * 59.99642 * 11 9 7 13 13 H 1.48504 * 109.47235 * 180.02562 * 11 9 7 14 14 H 1.48504 * 109.46651 * 299.99824 * 11 9 7 15 15 C 1.46917 * 118.73910 * 306.32295 * 6 5 4 16 16 C 1.53042 * 109.45796 * 119.97381 * 2 1 3 17 17 H 1.08999 * 109.52559 * 301.34719 * 16 2 1 18 18 N 1.46498 * 109.50153 * 61.43341 * 16 2 1 19 19 C 1.34781 * 120.00195 * 204.83823 * 18 16 2 20 20 O 1.21558 * 119.99846 * 359.97438 * 19 18 16 21 21 C 1.47774 * 119.99827 * 179.97438 * 19 18 16 22 22 C 1.40650 * 119.70215 * 359.72594 * 21 19 18 23 23 C 1.35848 * 120.87928 * 179.74927 * 22 21 19 24 24 C 1.40401 * 119.84177 * 0.52147 * 23 22 21 25 25 C 1.40637 * 121.98166 * 179.75756 * 24 23 22 26 26 C 1.36224 * 118.73089 * 179.97438 * 25 24 23 27 27 N 1.32594 * 121.90174 * 359.97438 * 26 25 24 28 28 C 1.31236 * 122.74213 * 0.04860 * 27 26 25 29 29 C 1.40556 * 119.88362 * 359.95068 * 28 27 26 30 30 C 1.38564 * 119.69482 * 180.02562 * 21 19 18 31 31 H 1.09000 * 109.46817 * 300.02558 * 1 2 3 32 32 H 1.08991 * 109.47274 * 60.02564 * 1 2 3 33 33 H 1.08995 * 109.47589 * 180.02562 * 1 2 3 34 34 H 1.08996 * 109.68610 * 58.71674 * 4 2 1 35 35 H 1.09002 * 109.47692 * 298.51393 * 4 2 1 36 36 H 1.09003 * 109.58905 * 294.72177 * 5 4 2 37 37 H 1.09001 * 109.58865 * 174.43764 * 5 4 2 38 38 H 0.96997 * 119.99488 * 180.02562 * 10 9 7 39 39 H 1.09003 * 109.58812 * 173.39821 * 15 6 5 40 40 H 1.09007 * 109.58397 * 293.82038 * 15 6 5 41 41 H 0.97007 * 119.99694 * 24.83354 * 18 16 2 42 42 H 1.08001 * 119.56091 * 0.02562 * 22 21 19 43 43 H 1.07998 * 120.08190 * 180.26368 * 23 22 21 44 44 H 1.08003 * 120.63015 * 359.96093 * 25 24 23 45 45 H 1.07994 * 119.04632 * 180.02562 * 26 25 24 46 46 H 1.07998 * 120.06132 * 179.97438 * 28 27 26 47 47 H 1.07998 * 120.34948 * 359.95593 * 30 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0276 0.0000 4 6 2.0398 -0.7210 -1.2537 5 6 3.5713 -0.6886 -1.2643 6 7 4.0678 -1.2490 -0.0001 7 6 4.9763 -2.2735 -0.0002 8 1 5.0042 -2.9704 -0.8249 9 6 5.8614 -2.4166 1.0595 10 7 6.0659 -1.4128 1.8861 11 14 6.7622 -4.0332 1.3125 12 1 7.5860 -4.3338 0.1141 13 1 7.6415 -3.9287 2.5047 14 1 5.7747 -5.1228 1.5204 15 6 3.5714 -0.6889 1.2642 16 6 2.0398 -0.7209 1.2500 17 1 1.6572 -0.2215 2.1401 18 7 1.5801 -2.1118 1.2341 19 6 1.4546 -2.7934 2.3900 20 8 1.7234 -2.2542 3.4458 21 6 0.9904 -4.1963 2.3739 22 6 0.6756 -4.8122 1.1492 23 6 0.2515 -6.1020 1.1062 24 6 0.1132 -6.8321 2.2974 25 6 -0.3269 -8.1678 2.3056 26 6 -0.4367 -8.8138 3.4999 27 7 -0.1408 -8.2196 4.6477 28 6 0.2749 -6.9768 4.7171 29 6 0.4226 -6.2210 3.5413 30 6 0.8631 -4.8909 3.5661 31 1 -0.3633 0.5142 0.8898 32 1 -0.3633 0.5134 -0.8901 33 1 -0.3634 -1.0276 0.0005 34 1 1.6592 -0.2217 -2.1447 35 1 1.6979 -1.7560 -1.2421 36 1 3.9143 0.3410 -1.3673 37 1 3.9437 -1.2829 -2.0987 38 1 6.6846 -1.5126 2.6264 39 1 3.9417 -1.2849 2.0983 40 1 3.9143 0.3407 1.3673 41 1 1.3659 -2.5422 0.3915 42 1 0.7766 -4.2536 0.2304 43 1 0.0174 -6.5635 0.1582 44 1 -0.5732 -8.6717 1.3826 45 1 -0.7737 -9.8397 3.5121 46 1 0.5035 -6.5355 5.6760 47 1 1.1020 -4.4127 4.5045 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000968504786.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:25:43 Heat of formation + Delta-G solvation = 17.808169 kcal Electronic energy + Delta-G solvation = -29889.194036 eV Core-core repulsion = 26036.198485 eV Total energy + Delta-G solvation = -3852.995551 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -41.95668 -41.03002 -39.26395 -37.89746 -35.95011 -34.43861 -34.00655 -32.89316 -32.37692 -30.94594 -30.43319 -28.91548 -26.19427 -25.53415 -24.95455 -23.83827 -23.21786 -22.75101 -22.12939 -20.32207 -19.48256 -18.78778 -18.61360 -17.66776 -17.07704 -16.75868 -16.56526 -16.04828 -15.96130 -15.70671 -15.42173 -15.21679 -14.99138 -14.90155 -14.71245 -14.59799 -14.51356 -14.26322 -14.07431 -13.57490 -13.16600 -13.04033 -13.03346 -12.86066 -12.69206 -12.61457 -12.48915 -12.32164 -12.27783 -11.95279 -11.56346 -11.32230 -11.24122 -11.06108 -11.01463 -10.55517 -10.50862 -10.24114 -9.94529 -9.11034 -8.63933 -7.86826 -5.31341 -0.81447 -0.33220 0.77210 1.38138 1.42251 1.46713 1.54824 2.20653 2.42564 2.47622 3.05513 3.29347 3.43413 3.51898 3.65100 3.65748 3.69791 3.86257 3.90410 3.98427 4.01798 4.05784 4.13783 4.29934 4.52309 4.62365 4.66627 4.67880 4.72125 4.77198 4.79035 4.90219 4.92027 4.95211 4.96813 5.09983 5.18205 5.20580 5.25195 5.27163 5.29627 5.47324 5.51775 5.59101 5.60738 5.69715 5.71757 5.73704 6.39025 6.63577 6.93045 7.14479 7.29887 7.88059 8.38701 9.18011 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.010515 B = 0.004138 C = 0.003430 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2662.253260 B = 6764.534722 C = 8160.659873 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.088 4.088 3 H 0.077 0.923 4 C -0.116 4.116 5 C 0.135 3.865 6 N -0.599 5.599 7 C -0.249 4.249 8 H 0.071 0.929 9 C -0.048 4.048 10 N -0.933 5.933 11 Si 0.950 3.050 12 H -0.268 1.268 13 H -0.302 1.302 14 H -0.284 1.284 15 C 0.171 3.829 16 C 0.136 3.864 17 H 0.064 0.936 18 N -0.679 5.679 19 C 0.547 3.453 20 O -0.588 6.588 21 C -0.143 4.143 22 C -0.076 4.076 23 C -0.105 4.105 24 C -0.025 4.025 25 C -0.149 4.149 26 C 0.070 3.930 27 N -0.511 5.511 28 C 0.147 3.853 29 C -0.134 4.134 30 C -0.033 4.033 31 H 0.048 0.952 32 H 0.077 0.923 33 H 0.057 0.943 34 H 0.093 0.907 35 H 0.063 0.937 36 H 0.012 0.988 37 H 0.058 0.942 38 H 0.244 0.756 39 H 0.047 0.953 40 H -0.003 1.003 41 H 0.406 0.594 42 H 0.148 0.852 43 H 0.175 0.825 44 H 0.176 0.824 45 H 0.183 0.817 46 H 0.179 0.821 47 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.343 -9.323 -5.774 21.371 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.107 4.107 3 H 0.095 0.905 4 C -0.154 4.154 5 C 0.010 3.990 6 N -0.323 5.323 7 C -0.379 4.379 8 H 0.089 0.911 9 C -0.243 4.243 10 N -0.580 5.580 11 Si 0.779 3.221 12 H -0.194 1.194 13 H -0.229 1.229 14 H -0.211 1.211 15 C 0.044 3.956 16 C 0.030 3.970 17 H 0.082 0.918 18 N -0.330 5.330 19 C 0.335 3.665 20 O -0.470 6.470 21 C -0.147 4.147 22 C -0.095 4.095 23 C -0.123 4.123 24 C -0.031 4.031 25 C -0.169 4.169 26 C -0.073 4.073 27 N -0.219 5.219 28 C -0.024 4.024 29 C -0.137 4.137 30 C -0.054 4.054 31 H 0.067 0.933 32 H 0.096 0.904 33 H 0.076 0.924 34 H 0.111 0.889 35 H 0.082 0.918 36 H 0.030 0.970 37 H 0.077 0.923 38 H 0.053 0.947 39 H 0.066 0.934 40 H 0.015 0.985 41 H 0.245 0.755 42 H 0.165 0.835 43 H 0.192 0.808 44 H 0.194 0.806 45 H 0.200 0.800 46 H 0.196 0.804 47 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -18.172 -9.518 -4.288 20.957 hybrid contribution 1.449 0.093 -0.191 1.465 sum -16.723 -9.425 -4.479 19.711 Atomic orbital electron populations 1.21765 0.93007 1.02206 1.02297 1.21332 0.96892 0.99163 0.93285 0.90514 1.22023 0.95502 1.00490 0.97432 1.21164 0.93801 0.95922 0.88141 1.44158 1.48059 1.39435 1.00618 1.19391 1.09044 1.03441 1.06043 0.91118 1.25670 0.98746 0.99526 1.00403 1.70158 1.38422 1.30761 1.18619 0.85598 0.78350 0.81030 0.77126 1.19367 1.22862 1.21082 1.20870 0.90045 0.95008 0.89691 1.21518 0.95247 0.81460 0.98792 0.91811 1.45609 1.65490 1.13553 1.08339 1.18615 0.77264 0.86580 0.84011 1.90722 1.52979 1.70941 1.32383 1.20028 1.05149 0.93801 0.95674 1.21219 0.95755 0.96046 0.96522 1.21232 0.99269 0.93361 0.98396 1.18667 0.96021 0.95269 0.93102 1.22288 1.00064 0.93011 1.01495 1.22802 0.95874 1.01343 0.87263 1.67516 1.11996 1.11300 1.31126 1.23548 0.91808 0.89297 0.97787 1.19106 1.03778 0.94919 0.95857 1.21463 0.92984 0.92536 0.98390 0.93280 0.90407 0.92423 0.88856 0.91824 0.96974 0.92342 0.94663 0.93439 0.98515 0.75540 0.83472 0.80759 0.80643 0.80030 0.80391 0.84494 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.86 9.05 71.98 0.65 -2.21 16 2 C -0.09 -2.46 2.48 -10.66 -0.03 -2.49 16 3 H 0.08 2.21 8.14 -2.39 -0.02 2.20 16 4 C -0.12 -3.08 5.23 30.78 0.16 -2.92 16 5 C 0.13 5.00 6.50 86.36 0.56 5.56 16 6 N -0.60 -28.64 2.91 -699.07 -2.04 -30.68 16 7 C -0.25 -13.34 9.58 84.03 0.81 -12.53 16 8 H 0.07 3.62 7.89 -2.91 -0.02 3.60 16 9 C -0.05 -2.74 4.92 84.86 0.42 -2.32 16 10 N -0.93 -57.67 11.20 21.65 0.24 -57.43 16 11 Si 0.95 46.54 29.59 68.60 2.03 48.56 16 12 H -0.27 -12.37 7.11 99.48 0.71 -11.66 16 13 H -0.30 -15.26 7.11 99.48 0.71 -14.55 16 14 H -0.28 -13.74 7.11 99.48 0.71 -13.04 16 15 C 0.17 8.42 4.90 86.37 0.42 8.84 16 16 C 0.14 5.11 2.24 45.07 0.10 5.21 16 17 H 0.06 2.56 7.58 -2.39 -0.02 2.55 16 18 N -0.68 -23.43 4.20 -445.10 -1.87 -25.30 16 19 C 0.55 21.14 7.73 86.76 0.67 21.81 16 20 O -0.59 -27.68 15.96 -3.90 -0.06 -27.75 16 21 C -0.14 -4.52 5.87 -20.09 -0.12 -4.64 16 22 C -0.08 -1.81 9.44 22.30 0.21 -1.60 16 23 C -0.11 -2.02 9.77 22.24 0.22 -1.80 16 24 C -0.03 -0.55 5.75 -21.24 -0.12 -0.67 16 25 C -0.15 -2.43 9.87 22.39 0.22 -2.21 16 26 C 0.07 1.25 11.07 84.11 0.93 2.18 16 27 N -0.51 -11.90 10.30 -195.41 -2.01 -13.91 16 28 C 0.15 3.46 11.05 85.35 0.94 4.41 16 29 C -0.13 -3.47 5.74 -21.32 -0.12 -3.59 16 30 C -0.03 -0.98 9.37 22.81 0.21 -0.77 16 31 H 0.05 1.08 8.14 -2.39 -0.02 1.06 16 32 H 0.08 1.28 8.14 -2.39 -0.02 1.26 16 33 H 0.06 1.15 7.54 -2.39 -0.02 1.13 16 34 H 0.09 1.89 8.14 -2.39 -0.02 1.87 16 35 H 0.06 1.59 6.41 -2.39 -0.02 1.57 16 36 H 0.01 0.47 8.14 -2.39 -0.02 0.45 16 37 H 0.06 2.10 7.93 -2.39 -0.02 2.08 16 38 H 0.24 14.98 8.31 -92.71 -0.77 14.21 16 39 H 0.05 2.83 6.06 -2.39 -0.01 2.81 16 40 H 0.00 -0.17 8.14 -2.38 -0.02 -0.18 16 41 H 0.41 11.68 4.62 -92.70 -0.43 11.25 16 42 H 0.15 2.86 6.34 -2.91 -0.02 2.85 16 43 H 0.18 1.93 8.06 -2.91 -0.02 1.91 16 44 H 0.18 1.48 8.06 -2.91 -0.02 1.46 16 45 H 0.18 2.01 8.06 -2.91 -0.02 1.99 16 46 H 0.18 3.44 8.06 -2.91 -0.02 3.42 16 47 H 0.14 4.24 7.61 -2.91 -0.02 4.21 16 Total: -1.00 -76.79 377.41 2.99 -73.80 By element: Atomic # 1 Polarization: 21.89 SS G_CDS: 0.56 Total: 22.45 kcal Atomic # 6 Polarization: 4.11 SS G_CDS: 6.14 Total: 10.25 kcal Atomic # 7 Polarization: -121.64 SS G_CDS: -5.68 Total: -127.31 kcal Atomic # 8 Polarization: -27.68 SS G_CDS: -0.06 Total: -27.75 kcal Atomic # 14 Polarization: 46.54 SS G_CDS: 2.03 Total: 48.56 kcal Total: -76.79 2.99 -73.80 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000968504786.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.604 kcal (2) G-P(sol) polarization free energy of solvation -76.789 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.815 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.993 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.796 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.808 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds