Wall clock time and date at job start Tue Mar 31 2020 22:26:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09005 * 109.45905 * 2 1 4 4 C 1.53043 * 109.46031 * 119.95924 * 2 1 3 5 5 C 1.53191 * 109.31275 * 181.38433 * 4 2 1 6 6 N 1.46924 * 108.77764 * 305.36724 * 5 4 2 7 7 C 1.36938 * 120.63197 * 233.58904 * 6 5 4 8 8 H 1.07998 * 119.99543 * 27.68331 * 7 6 5 9 9 C 1.38812 * 120.00013 * 207.68563 * 7 6 5 10 10 N 1.31621 * 119.99982 * 17.36165 * 9 7 6 11 11 Si 1.86804 * 119.99799 * 197.36735 * 9 7 6 12 12 H 1.48499 * 109.47175 * 90.00066 * 11 9 7 13 13 H 1.48499 * 109.46899 * 209.99920 * 11 9 7 14 14 H 1.48494 * 109.47098 * 329.99517 * 11 9 7 15 15 C 1.46926 * 118.74001 * 53.60564 * 6 5 4 16 16 C 1.53040 * 109.45863 * 240.02999 * 2 1 3 17 17 H 1.08995 * 109.49702 * 298.59518 * 16 2 1 18 18 N 1.46497 * 109.49928 * 58.66362 * 16 2 1 19 19 C 1.34780 * 119.99649 * 204.99764 * 18 16 2 20 20 O 1.21539 * 120.00305 * 0.02562 * 19 18 16 21 21 C 1.47896 * 119.99667 * 180.02562 * 19 18 16 22 22 C 1.40592 * 119.72780 * 359.72987 * 21 19 18 23 23 C 1.35859 * 120.95083 * 179.71134 * 22 21 19 24 24 C 1.40490 * 119.87852 * 0.55963 * 23 22 21 25 25 C 1.40481 * 121.84685 * 179.74926 * 24 23 22 26 26 N 1.31210 * 119.94390 * 179.97438 * 25 24 23 27 27 C 1.32555 * 122.80424 * 359.97438 * 26 25 24 28 28 C 1.36217 * 121.84848 * 0.02562 * 27 26 25 29 29 C 1.40766 * 118.67391 * 359.97438 * 28 27 26 30 30 C 1.38527 * 119.73025 * 180.02562 * 21 19 18 31 31 H 1.09003 * 109.47065 * 179.97438 * 1 2 3 32 32 H 1.09003 * 109.47039 * 299.97234 * 1 2 3 33 33 H 1.09007 * 109.46877 * 59.97331 * 1 2 3 34 34 H 1.09001 * 109.49475 * 301.33863 * 4 2 1 35 35 H 1.09003 * 109.49367 * 61.43222 * 4 2 1 36 36 H 1.08998 * 109.58627 * 65.15196 * 5 4 2 37 37 H 1.08995 * 109.58541 * 185.43618 * 5 4 2 38 38 H 0.97002 * 119.99890 * 179.97438 * 10 9 7 39 39 H 1.08998 * 109.58831 * 186.60277 * 15 6 5 40 40 H 1.09005 * 109.58563 * 66.17834 * 15 6 5 41 41 H 0.96995 * 120.00453 * 25.00230 * 18 16 2 42 42 H 1.08001 * 119.52888 * 359.97438 * 22 21 19 43 43 H 1.07992 * 120.05946 * 180.30250 * 23 22 21 44 44 H 1.08005 * 120.02263 * 359.97438 * 25 24 23 45 45 H 1.08003 * 119.08018 * 179.97438 * 27 26 25 46 46 H 1.07996 * 120.66829 * 180.02562 * 28 27 26 47 47 H 1.08004 * 120.35888 * 0.02562 * 30 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0278 0.0000 4 6 2.0399 -0.7206 1.2502 5 6 3.5714 -0.6885 1.2643 6 7 4.0679 -1.2488 0.0002 7 6 4.9764 -2.2734 0.0002 8 1 5.0096 -2.9655 0.8286 9 6 5.8547 -2.4223 -1.0644 10 7 6.0604 -1.4205 -1.8929 11 14 6.7445 -4.0446 -1.3211 12 1 5.9274 -4.9245 -2.1949 13 1 8.0591 -3.7918 -1.9639 14 1 6.9544 -4.7071 -0.0089 15 6 3.5714 -0.6887 -1.2642 16 6 2.0399 -0.7208 -1.2500 17 1 1.6974 -1.7555 -1.2384 18 7 1.5256 -0.0489 -2.4459 19 6 1.3972 -0.7326 -3.6003 20 8 1.7076 -1.9067 -3.6490 21 6 0.8785 -0.0541 -4.8078 22 6 0.5159 1.3027 -4.7435 23 6 0.0422 1.9520 -5.8388 24 6 -0.1012 1.2618 -7.0541 25 6 -0.5915 1.8909 -8.2105 26 7 -0.7097 1.2105 -9.3261 27 6 -0.3830 -0.0704 -9.4241 28 6 0.1016 -0.7719 -8.3618 29 6 0.2569 -0.1098 -7.1293 30 6 0.7483 -0.7622 -5.9912 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3633 0.5134 0.8903 33 1 -0.3633 0.5143 -0.8898 34 1 1.6572 -0.2205 2.1399 35 1 1.6978 -1.7555 1.2385 36 1 3.9143 0.3410 1.3673 37 1 3.9416 -1.2822 2.1000 38 1 6.6744 -1.5245 -2.6366 39 1 3.9418 -1.2847 -2.0983 40 1 3.9143 0.3408 -1.3674 41 1 1.2776 0.8880 -2.4070 42 1 0.6192 1.8377 -3.8110 43 1 -0.2275 2.9958 -5.7744 44 1 -0.8710 2.9337 -8.1811 45 1 -0.5051 -0.5722 -10.3727 46 1 0.3623 -1.8151 -8.4632 47 1 1.0229 -1.8058 -6.0359 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000968513992.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:26:04 Heat of formation + Delta-G solvation = 36.090734 kcal Electronic energy + Delta-G solvation = -29098.021586 eV Core-core repulsion = 25245.818827 eV Total energy + Delta-G solvation = -3852.202760 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -41.08838 -39.69804 -37.91180 -36.89200 -34.44326 -33.37932 -33.07655 -31.58807 -30.95767 -29.84312 -28.87272 -27.39118 -25.11220 -24.03858 -24.00133 -22.68217 -22.09775 -21.07976 -20.50161 -19.53279 -18.20363 -17.82322 -16.90621 -16.72152 -16.23551 -15.51769 -15.15614 -14.98415 -14.63900 -14.26941 -14.13955 -13.90424 -13.82991 -13.75663 -13.56822 -13.38974 -13.13510 -13.00038 -12.56759 -12.44682 -12.14745 -12.02057 -11.68264 -11.61461 -11.32183 -10.90826 -10.73100 -10.67426 -10.48440 -10.46736 -10.17433 -10.03641 -9.92544 -9.80732 -9.57208 -9.46737 -9.29738 -8.58849 -8.43311 -8.32542 -6.67350 -5.76367 -3.19538 0.02124 0.47815 1.63471 2.45675 3.34447 3.43610 3.45402 3.49619 3.50288 3.91707 4.13377 4.27129 4.46718 4.51643 4.53663 4.69919 4.78022 4.95147 4.99910 5.14574 5.22346 5.34096 5.36882 5.43651 5.47681 5.50654 5.57877 5.69511 5.79248 5.87709 5.96517 5.99656 6.03749 6.07187 6.12513 6.21818 6.35020 6.36179 6.43375 6.48727 6.49992 6.69992 6.73255 6.88810 6.94655 7.26715 7.68911 7.70576 7.80260 7.85858 8.46291 8.52973 9.22090 9.86113 10.40616 11.31596 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.012689 B = 0.003094 C = 0.002627 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2206.187344 B = 9048.588770 C =10657.540679 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.092 4.092 3 H 0.067 0.933 4 C -0.125 4.125 5 C 0.142 3.858 6 N -0.588 5.588 7 C -0.257 4.257 8 H 0.067 0.933 9 C 0.007 3.993 10 N -0.899 5.899 11 Si 0.902 3.098 12 H -0.286 1.286 13 H -0.291 1.291 14 H -0.279 1.279 15 C 0.166 3.834 16 C 0.124 3.876 17 H 0.084 0.916 18 N -0.710 5.710 19 C 0.549 3.451 20 O -0.524 6.524 21 C -0.103 4.103 22 C -0.092 4.092 23 C -0.093 4.093 24 C -0.100 4.100 25 C 0.142 3.858 26 N -0.486 5.486 27 C 0.069 3.931 28 C -0.143 4.143 29 C -0.033 4.033 30 C -0.047 4.047 31 H 0.052 0.948 32 H 0.050 0.950 33 H 0.048 0.952 34 H 0.056 0.944 35 H 0.060 0.940 36 H 0.018 0.982 37 H 0.056 0.944 38 H 0.253 0.747 39 H 0.095 0.905 40 H 0.017 0.983 41 H 0.391 0.609 42 H 0.131 0.869 43 H 0.138 0.862 44 H 0.164 0.836 45 H 0.154 0.846 46 H 0.141 0.859 47 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.830 8.739 -7.515 19.581 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.111 4.111 3 H 0.085 0.915 4 C -0.165 4.165 5 C 0.015 3.985 6 N -0.310 5.310 7 C -0.386 4.386 8 H 0.084 0.916 9 C -0.193 4.193 10 N -0.543 5.543 11 Si 0.732 3.268 12 H -0.213 1.213 13 H -0.218 1.218 14 H -0.204 1.204 15 C 0.039 3.961 16 C 0.019 3.981 17 H 0.102 0.898 18 N -0.361 5.361 19 C 0.335 3.665 20 O -0.401 6.401 21 C -0.107 4.107 22 C -0.110 4.110 23 C -0.113 4.113 24 C -0.102 4.102 25 C -0.030 4.030 26 N -0.194 5.194 27 C -0.074 4.074 28 C -0.162 4.162 29 C -0.038 4.038 30 C -0.066 4.066 31 H 0.071 0.929 32 H 0.069 0.931 33 H 0.067 0.933 34 H 0.074 0.926 35 H 0.079 0.921 36 H 0.036 0.964 37 H 0.074 0.926 38 H 0.063 0.937 39 H 0.114 0.886 40 H 0.035 0.965 41 H 0.226 0.774 42 H 0.149 0.851 43 H 0.156 0.844 44 H 0.181 0.819 45 H 0.171 0.829 46 H 0.159 0.841 47 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -15.753 8.149 -8.474 19.656 hybrid contribution 0.752 -0.704 0.553 1.169 sum -15.002 7.445 -7.921 18.526 Atomic orbital electron populations 1.21858 0.95986 1.01622 1.00715 1.21312 0.94569 0.99685 0.95579 0.91473 1.22072 0.98962 1.00064 0.95405 1.20959 0.90802 0.96497 0.90193 1.43958 1.48073 1.39863 0.99147 1.19156 1.09780 1.03238 1.06429 0.91554 1.25031 0.97149 0.97409 0.99666 1.70015 1.37511 1.29017 1.17726 0.86299 0.78683 0.83823 0.78022 1.21255 1.21781 1.20409 1.21104 0.86355 0.97505 0.91111 1.22056 0.98453 0.96421 0.81218 0.89825 1.45987 1.65569 1.13953 1.10562 1.18143 0.78684 0.86655 0.83027 1.90827 1.49208 1.15754 1.84319 1.20214 1.01288 0.94383 0.94822 1.21012 0.97423 0.93378 0.99220 1.20853 0.99132 1.00027 0.91281 1.19143 1.00974 0.94005 0.96110 1.23224 0.93304 0.99640 0.86806 1.67376 1.15378 1.08969 1.27696 1.22175 0.96311 0.90018 0.98849 1.22024 1.00073 1.01503 0.92624 1.18158 0.98115 0.93172 0.94358 1.21473 0.94347 1.00631 0.90128 0.92892 0.93067 0.93297 0.92567 0.92073 0.96423 0.92577 0.93660 0.88650 0.96493 0.77406 0.85093 0.84380 0.81857 0.82886 0.84082 0.83498 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.80 9.02 37.16 0.34 -1.46 16 2 C -0.09 -1.42 2.27 -90.57 -0.21 -1.62 16 3 H 0.07 1.00 8.14 -51.93 -0.42 0.57 16 4 C -0.13 -2.06 5.36 -26.61 -0.14 -2.20 16 5 C 0.14 2.88 6.51 -3.71 -0.02 2.86 16 6 N -0.59 -14.73 3.00 -172.32 -0.52 -15.25 16 7 C -0.26 -7.16 9.59 -15.06 -0.14 -7.30 16 8 H 0.07 1.81 7.89 -52.49 -0.41 1.40 16 9 C 0.01 0.19 4.91 -17.43 -0.09 0.10 16 10 N -0.90 -26.72 11.19 55.49 0.62 -26.10 16 11 Si 0.90 22.49 29.59 -169.99 -5.03 17.46 16 12 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 13 H -0.29 -7.28 7.11 56.52 0.40 -6.87 16 14 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 15 C 0.17 3.99 4.89 -3.71 -0.02 3.97 16 16 C 0.12 2.33 2.07 -67.81 -0.14 2.19 16 17 H 0.08 1.82 7.58 -51.93 -0.39 1.42 16 18 N -0.71 -11.17 4.32 -54.62 -0.24 -11.40 16 19 C 0.55 9.51 7.74 -12.30 -0.10 9.42 16 20 O -0.52 -11.48 15.97 5.33 0.09 -11.40 16 21 C -0.10 -1.41 5.87 -104.95 -0.62 -2.02 16 22 C -0.09 -0.95 9.44 -39.55 -0.37 -1.32 16 23 C -0.09 -0.83 9.77 -39.59 -0.39 -1.21 16 24 C -0.10 -1.04 5.75 -106.78 -0.61 -1.66 16 25 C 0.14 1.33 11.04 -16.97 -0.19 1.14 16 26 N -0.49 -5.27 10.29 -13.15 -0.14 -5.40 16 27 C 0.07 0.68 11.07 -17.97 -0.20 0.48 16 28 C -0.14 -1.44 9.88 -39.35 -0.39 -1.83 16 29 C -0.03 -0.39 5.74 -106.82 -0.61 -1.00 16 30 C -0.05 -0.62 9.38 -38.78 -0.36 -0.98 16 31 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 32 H 0.05 0.56 8.14 -51.93 -0.42 0.13 16 33 H 0.05 0.54 7.36 -51.93 -0.38 0.16 16 34 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 35 H 0.06 1.06 8.14 -51.93 -0.42 0.63 16 36 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 37 H 0.06 1.12 7.94 -51.93 -0.41 0.71 16 38 H 0.25 7.35 8.31 -40.82 -0.34 7.01 16 39 H 0.10 2.72 6.04 -51.93 -0.31 2.41 16 40 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 41 H 0.39 4.76 6.29 -40.82 -0.26 4.50 16 42 H 0.13 1.04 6.34 -52.49 -0.33 0.71 16 43 H 0.14 0.76 8.06 -52.49 -0.42 0.33 16 44 H 0.16 0.98 8.06 -52.48 -0.42 0.56 16 45 H 0.15 1.09 8.06 -52.48 -0.42 0.66 16 46 H 0.14 1.13 8.06 -52.49 -0.42 0.71 16 47 H 0.15 1.99 7.62 -52.48 -0.40 1.60 16 LS Contribution 380.53 15.07 5.73 5.73 Total: -1.00 -34.34 380.53 -10.43 -44.77 By element: Atomic # 1 Polarization: 10.73 SS G_CDS: -6.69 Total: 4.04 kcal Atomic # 6 Polarization: 1.81 SS G_CDS: -4.26 Total: -2.45 kcal Atomic # 7 Polarization: -57.89 SS G_CDS: -0.27 Total: -58.15 kcal Atomic # 8 Polarization: -11.48 SS G_CDS: 0.09 Total: -11.40 kcal Atomic # 14 Polarization: 22.49 SS G_CDS: -5.03 Total: 17.46 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -34.34 -10.43 -44.77 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000968513992.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.859 kcal (2) G-P(sol) polarization free energy of solvation -34.339 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.520 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.429 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.768 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.091 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds