Wall clock time and date at job start Tue Mar 31 2020 22:26:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09005 * 109.45905 * 2 1 4 4 C 1.53043 * 109.46031 * 119.95924 * 2 1 3 5 5 C 1.53191 * 109.31275 * 181.38433 * 4 2 1 6 6 N 1.46924 * 108.77764 * 305.36724 * 5 4 2 7 7 C 1.36938 * 120.63197 * 233.58904 * 6 5 4 8 8 H 1.07998 * 119.99543 * 27.68331 * 7 6 5 9 9 C 1.38812 * 120.00013 * 207.68563 * 7 6 5 10 10 N 1.31621 * 119.99982 * 17.36165 * 9 7 6 11 11 Si 1.86804 * 119.99799 * 197.36735 * 9 7 6 12 12 H 1.48499 * 109.47175 * 90.00066 * 11 9 7 13 13 H 1.48499 * 109.46899 * 209.99920 * 11 9 7 14 14 H 1.48494 * 109.47098 * 329.99517 * 11 9 7 15 15 C 1.46926 * 118.74001 * 53.60564 * 6 5 4 16 16 C 1.53040 * 109.45863 * 240.02999 * 2 1 3 17 17 H 1.08995 * 109.49702 * 298.59518 * 16 2 1 18 18 N 1.46497 * 109.49928 * 58.66362 * 16 2 1 19 19 C 1.34780 * 119.99649 * 204.99764 * 18 16 2 20 20 O 1.21539 * 120.00305 * 0.02562 * 19 18 16 21 21 C 1.47896 * 119.99667 * 180.02562 * 19 18 16 22 22 C 1.40592 * 119.72780 * 359.72987 * 21 19 18 23 23 C 1.35859 * 120.95083 * 179.71134 * 22 21 19 24 24 C 1.40490 * 119.87852 * 0.55963 * 23 22 21 25 25 C 1.40481 * 121.84685 * 179.74926 * 24 23 22 26 26 N 1.31210 * 119.94390 * 179.97438 * 25 24 23 27 27 C 1.32555 * 122.80424 * 359.97438 * 26 25 24 28 28 C 1.36217 * 121.84848 * 0.02562 * 27 26 25 29 29 C 1.40766 * 118.67391 * 359.97438 * 28 27 26 30 30 C 1.38527 * 119.73025 * 180.02562 * 21 19 18 31 31 H 1.09003 * 109.47065 * 179.97438 * 1 2 3 32 32 H 1.09003 * 109.47039 * 299.97234 * 1 2 3 33 33 H 1.09007 * 109.46877 * 59.97331 * 1 2 3 34 34 H 1.09001 * 109.49475 * 301.33863 * 4 2 1 35 35 H 1.09003 * 109.49367 * 61.43222 * 4 2 1 36 36 H 1.08998 * 109.58627 * 65.15196 * 5 4 2 37 37 H 1.08995 * 109.58541 * 185.43618 * 5 4 2 38 38 H 0.97002 * 119.99890 * 179.97438 * 10 9 7 39 39 H 1.08998 * 109.58831 * 186.60277 * 15 6 5 40 40 H 1.09005 * 109.58563 * 66.17834 * 15 6 5 41 41 H 0.96995 * 120.00453 * 25.00230 * 18 16 2 42 42 H 1.08001 * 119.52888 * 359.97438 * 22 21 19 43 43 H 1.07992 * 120.05946 * 180.30250 * 23 22 21 44 44 H 1.08005 * 120.02263 * 359.97438 * 25 24 23 45 45 H 1.08003 * 119.08018 * 179.97438 * 27 26 25 46 46 H 1.07996 * 120.66829 * 180.02562 * 28 27 26 47 47 H 1.08004 * 120.35888 * 0.02562 * 30 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0278 0.0000 4 6 2.0399 -0.7206 1.2502 5 6 3.5714 -0.6885 1.2643 6 7 4.0679 -1.2488 0.0002 7 6 4.9764 -2.2734 0.0002 8 1 5.0096 -2.9655 0.8286 9 6 5.8547 -2.4223 -1.0644 10 7 6.0604 -1.4205 -1.8929 11 14 6.7445 -4.0446 -1.3211 12 1 5.9274 -4.9245 -2.1949 13 1 8.0591 -3.7918 -1.9639 14 1 6.9544 -4.7071 -0.0089 15 6 3.5714 -0.6887 -1.2642 16 6 2.0399 -0.7208 -1.2500 17 1 1.6974 -1.7555 -1.2384 18 7 1.5256 -0.0489 -2.4459 19 6 1.3972 -0.7326 -3.6003 20 8 1.7076 -1.9067 -3.6490 21 6 0.8785 -0.0541 -4.8078 22 6 0.5159 1.3027 -4.7435 23 6 0.0422 1.9520 -5.8388 24 6 -0.1012 1.2618 -7.0541 25 6 -0.5915 1.8909 -8.2105 26 7 -0.7097 1.2105 -9.3261 27 6 -0.3830 -0.0704 -9.4241 28 6 0.1016 -0.7719 -8.3618 29 6 0.2569 -0.1098 -7.1293 30 6 0.7483 -0.7622 -5.9912 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3633 0.5134 0.8903 33 1 -0.3633 0.5143 -0.8898 34 1 1.6572 -0.2205 2.1399 35 1 1.6978 -1.7555 1.2385 36 1 3.9143 0.3410 1.3673 37 1 3.9416 -1.2822 2.1000 38 1 6.6744 -1.5245 -2.6366 39 1 3.9418 -1.2847 -2.0983 40 1 3.9143 0.3408 -1.3674 41 1 1.2776 0.8880 -2.4070 42 1 0.6192 1.8377 -3.8110 43 1 -0.2275 2.9958 -5.7744 44 1 -0.8710 2.9337 -8.1811 45 1 -0.5051 -0.5722 -10.3727 46 1 0.3623 -1.8151 -8.4632 47 1 1.0229 -1.8058 -6.0359 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000968513992.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:26:03 Heat of formation + Delta-G solvation = 14.291475 kcal Electronic energy + Delta-G solvation = -29098.966873 eV Core-core repulsion = 25245.818827 eV Total energy + Delta-G solvation = -3853.148047 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -41.97252 -41.01118 -39.32550 -37.93228 -36.16541 -34.81279 -34.00457 -32.91147 -32.47569 -30.64723 -30.40699 -28.99845 -26.33700 -25.70669 -24.80140 -23.88799 -23.16523 -22.65693 -21.84580 -21.04048 -19.32090 -18.77634 -18.67466 -17.76720 -17.22836 -17.01654 -16.68369 -16.06678 -15.93386 -15.67756 -15.32767 -15.30033 -15.14253 -14.93128 -14.69836 -14.62552 -14.49620 -14.11541 -13.82258 -13.60317 -13.42127 -13.29987 -13.07179 -13.03637 -12.78400 -12.59872 -12.34309 -12.17613 -12.11887 -11.91186 -11.64468 -11.51430 -11.27376 -11.22295 -11.02192 -10.58095 -10.53336 -10.29665 -10.03889 -9.13300 -8.71612 -7.91822 -5.37046 -0.84125 -0.35229 0.79928 1.38143 1.43645 1.48470 1.49462 2.05519 2.34166 2.46842 3.04995 3.24176 3.46288 3.50597 3.52009 3.72193 3.76518 3.80787 3.85128 3.98317 4.00779 4.06667 4.16128 4.27844 4.46738 4.55329 4.60012 4.64571 4.67297 4.73095 4.74470 4.91653 4.92346 4.97958 5.02432 5.11563 5.17935 5.19300 5.20744 5.23440 5.30221 5.41131 5.45447 5.52252 5.59606 5.60862 5.70746 5.76665 6.33619 6.53884 6.94516 7.09142 7.21431 7.83020 8.31555 9.12756 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.012689 B = 0.003094 C = 0.002627 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2206.187344 B = 9048.588770 C =10657.540679 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.085 4.085 3 H 0.083 0.917 4 C -0.116 4.116 5 C 0.135 3.865 6 N -0.609 5.609 7 C -0.263 4.263 8 H 0.068 0.932 9 C -0.050 4.050 10 N -0.930 5.930 11 Si 0.960 3.040 12 H -0.296 1.296 13 H -0.291 1.291 14 H -0.261 1.261 15 C 0.178 3.822 16 C 0.140 3.860 17 H 0.049 0.951 18 N -0.695 5.695 19 C 0.544 3.456 20 O -0.584 6.584 21 C -0.116 4.116 22 C -0.100 4.100 23 C -0.069 4.069 24 C -0.111 4.111 25 C 0.151 3.849 26 N -0.507 5.507 27 C 0.070 3.930 28 C -0.158 4.158 29 C -0.048 4.048 30 C -0.066 4.066 31 H 0.040 0.960 32 H 0.079 0.921 33 H 0.064 0.936 34 H 0.098 0.902 35 H 0.048 0.952 36 H 0.023 0.977 37 H 0.055 0.945 38 H 0.246 0.754 39 H 0.041 0.959 40 H 0.002 0.998 41 H 0.413 0.587 42 H 0.158 0.842 43 H 0.186 0.814 44 H 0.204 0.796 45 H 0.176 0.824 46 H 0.151 0.849 47 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.346 11.731 -7.094 22.902 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.104 4.104 3 H 0.101 0.899 4 C -0.155 4.155 5 C 0.010 3.990 6 N -0.333 5.333 7 C -0.393 4.393 8 H 0.086 0.914 9 C -0.246 4.246 10 N -0.575 5.575 11 Si 0.788 3.212 12 H -0.223 1.223 13 H -0.217 1.217 14 H -0.185 1.185 15 C 0.051 3.949 16 C 0.033 3.967 17 H 0.067 0.933 18 N -0.346 5.346 19 C 0.333 3.667 20 O -0.465 6.465 21 C -0.120 4.120 22 C -0.119 4.119 23 C -0.088 4.088 24 C -0.113 4.113 25 C -0.021 4.021 26 N -0.215 5.215 27 C -0.072 4.072 28 C -0.177 4.177 29 C -0.053 4.053 30 C -0.085 4.085 31 H 0.059 0.941 32 H 0.098 0.902 33 H 0.083 0.917 34 H 0.116 0.884 35 H 0.067 0.933 36 H 0.041 0.959 37 H 0.073 0.927 38 H 0.055 0.945 39 H 0.060 0.940 40 H 0.020 0.980 41 H 0.251 0.749 42 H 0.176 0.824 43 H 0.203 0.797 44 H 0.220 0.780 45 H 0.193 0.807 46 H 0.168 0.832 47 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -18.305 11.184 -8.017 22.900 hybrid contribution 1.506 -1.586 0.370 2.218 sum -16.798 9.598 -7.646 20.803 Atomic orbital electron populations 1.21785 0.92889 1.01635 1.02994 1.21282 0.96986 0.99499 0.92608 0.89863 1.21976 0.95641 1.00224 0.97701 1.21184 0.93628 0.96269 0.87892 1.44240 1.48107 1.39866 1.01080 1.19502 1.09615 1.04008 1.06209 0.91396 1.25770 0.98659 1.00242 0.99943 1.70166 1.38490 1.30704 1.18190 0.85372 0.77254 0.80265 0.78292 1.22332 1.21733 1.18498 1.20794 0.89727 0.95087 0.89279 1.21550 0.94847 0.95905 0.84348 0.93297 1.45747 1.64665 1.14839 1.09375 1.18824 0.77559 0.86118 0.84248 1.90790 1.51846 1.18540 1.85312 1.20038 1.02887 0.96133 0.92965 1.21225 0.97800 0.91637 1.01210 1.21336 0.96219 1.01736 0.89537 1.19478 1.00930 0.93403 0.97501 1.23856 0.91517 1.01041 0.85680 1.67467 1.16133 1.09375 1.28493 1.22558 0.95186 0.89980 0.99519 1.22198 1.00793 1.02279 0.92455 1.18320 0.98474 0.94389 0.94144 1.21407 0.95766 1.00108 0.91225 0.94061 0.90163 0.91660 0.88378 0.93277 0.95862 0.92654 0.94463 0.94000 0.98049 0.74864 0.82413 0.79668 0.77989 0.80654 0.83163 0.85597 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.89 9.02 71.98 0.65 -2.24 16 2 C -0.08 -2.42 2.27 -10.76 -0.02 -2.45 16 3 H 0.08 2.18 8.14 -2.38 -0.02 2.16 16 4 C -0.12 -3.57 5.36 30.67 0.16 -3.40 16 5 C 0.14 5.42 6.51 86.36 0.56 5.99 16 6 N -0.61 -31.50 3.00 -699.10 -2.09 -33.59 16 7 C -0.26 -15.19 9.59 84.03 0.81 -14.38 16 8 H 0.07 3.80 7.89 -2.91 -0.02 3.78 16 9 C -0.05 -3.00 4.91 84.86 0.42 -2.58 16 10 N -0.93 -58.23 11.19 21.65 0.24 -57.98 16 11 Si 0.96 48.13 29.59 68.60 2.03 50.16 16 12 H -0.30 -15.18 7.11 99.48 0.71 -14.47 16 13 H -0.29 -14.44 7.11 99.48 0.71 -13.73 16 14 H -0.26 -12.17 7.11 99.48 0.71 -11.46 16 15 C 0.18 8.97 4.89 86.36 0.42 9.39 16 16 C 0.14 5.39 2.07 45.07 0.09 5.48 16 17 H 0.05 2.25 7.58 -2.39 -0.02 2.23 16 18 N -0.69 -22.01 4.32 -445.00 -1.92 -23.93 16 19 C 0.54 19.90 7.74 86.80 0.67 20.57 16 20 O -0.58 -27.97 15.97 -3.84 -0.06 -28.03 16 21 C -0.12 -3.24 5.87 -20.08 -0.12 -3.36 16 22 C -0.10 -1.84 9.44 22.29 0.21 -1.63 16 23 C -0.07 -0.96 9.77 22.27 0.22 -0.74 16 24 C -0.11 -2.04 5.75 -21.26 -0.12 -2.16 16 25 C 0.15 2.31 11.04 85.33 0.94 3.25 16 26 N -0.51 -9.77 10.29 -195.51 -2.01 -11.78 16 27 C 0.07 1.27 11.07 84.11 0.93 2.20 16 28 C -0.16 -3.19 9.88 22.42 0.22 -2.97 16 29 C -0.05 -1.13 5.74 -21.29 -0.12 -1.25 16 30 C -0.07 -1.86 9.38 22.79 0.21 -1.65 16 31 H 0.04 0.99 8.14 -2.39 -0.02 0.97 16 32 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16 33 H 0.06 1.19 7.36 -2.38 -0.02 1.17 16 34 H 0.10 2.26 8.14 -2.39 -0.02 2.24 16 35 H 0.05 1.64 8.14 -2.39 -0.02 1.62 16 36 H 0.02 0.92 8.14 -2.39 -0.02 0.90 16 37 H 0.05 2.19 7.94 -2.39 -0.02 2.17 16 38 H 0.25 15.10 8.31 -92.71 -0.77 14.33 16 39 H 0.04 2.56 6.04 -2.39 -0.01 2.54 16 40 H 0.00 0.08 8.14 -2.38 -0.02 0.06 16 41 H 0.41 9.28 6.29 -92.71 -0.58 8.70 16 42 H 0.16 1.92 6.34 -2.91 -0.02 1.90 16 43 H 0.19 0.83 8.06 -2.91 -0.02 0.81 16 44 H 0.20 1.37 8.06 -2.91 -0.02 1.34 16 45 H 0.18 2.22 8.06 -2.91 -0.02 2.20 16 46 H 0.15 2.57 8.06 -2.91 -0.02 2.54 16 47 H 0.13 3.93 7.62 -2.91 -0.02 3.91 16 Total: -1.00 -82.64 380.53 2.72 -79.91 By element: Atomic # 1 Polarization: 16.79 SS G_CDS: 0.40 Total: 17.19 kcal Atomic # 6 Polarization: 1.92 SS G_CDS: 6.13 Total: 8.06 kcal Atomic # 7 Polarization: -121.51 SS G_CDS: -5.78 Total: -127.29 kcal Atomic # 8 Polarization: -27.97 SS G_CDS: -0.06 Total: -28.03 kcal Atomic # 14 Polarization: 48.13 SS G_CDS: 2.03 Total: 50.16 kcal Total: -82.64 2.72 -79.91 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000968513992.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.205 kcal (2) G-P(sol) polarization free energy of solvation -82.637 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.568 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.723 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.914 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.291 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds