Wall clock time and date at job start Tue Mar 31 2020 22:26:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09004 * 109.44571 * 2 1 4 4 C 1.53041 * 109.46101 * 119.96990 * 2 1 3 5 5 C 1.53192 * 109.31204 * 181.38718 * 4 2 1 6 6 N 1.46924 * 108.77412 * 305.36536 * 5 4 2 7 7 C 1.36942 * 120.62479 * 233.62977 * 6 5 4 8 8 H 1.07992 * 120.00249 * 27.66299 * 7 6 5 9 9 C 1.38817 * 119.99560 * 207.65648 * 7 6 5 10 10 N 1.31620 * 119.99886 * 17.38139 * 9 7 6 11 11 Si 1.86796 * 119.99931 * 197.37400 * 9 7 6 12 12 H 1.48500 * 109.47153 * 0.02562 * 11 9 7 13 13 H 1.48499 * 109.47197 * 120.00590 * 11 9 7 14 14 H 1.48499 * 109.47107 * 240.00342 * 11 9 7 15 15 C 1.46923 * 118.74192 * 53.60800 * 6 5 4 16 16 C 1.53037 * 109.46147 * 240.03714 * 2 1 3 17 17 H 1.09003 * 109.52408 * 58.64641 * 16 2 1 18 18 N 1.46495 * 109.49680 * 298.56679 * 16 2 1 19 19 C 1.34777 * 119.99755 * 155.16123 * 18 16 2 20 20 O 1.21545 * 120.00297 * 0.02562 * 19 18 16 21 21 C 1.47896 * 119.99999 * 179.97438 * 19 18 16 22 22 C 1.40606 * 119.72739 * 0.02562 * 21 19 18 23 23 C 1.35842 * 120.95028 * 179.97438 * 22 21 19 24 24 C 1.40494 * 119.88096 * 0.02562 * 23 22 21 25 25 C 1.40484 * 121.83535 * 180.02562 * 24 23 22 26 26 N 1.31212 * 119.93697 * 179.27463 * 25 24 23 27 27 C 1.32557 * 122.80136 * 0.66819 * 26 25 24 28 28 C 1.36221 * 121.84967 * 359.56076 * 27 26 25 29 29 C 1.40767 * 118.67267 * 359.97438 * 28 27 26 30 30 C 1.38524 * 119.73082 * 179.97438 * 21 19 18 31 31 H 1.08996 * 109.46924 * 179.97438 * 1 2 3 32 32 H 1.09002 * 109.47307 * 299.96097 * 1 2 3 33 33 H 1.09003 * 109.47062 * 59.96293 * 1 2 3 34 34 H 1.08993 * 109.49541 * 61.43351 * 4 2 1 35 35 H 1.09005 * 109.52284 * 301.35135 * 4 2 1 36 36 H 1.08998 * 109.58305 * 185.57488 * 5 4 2 37 37 H 1.09001 * 109.58440 * 65.15089 * 5 4 2 38 38 H 0.97001 * 119.99678 * 179.97438 * 10 9 7 39 39 H 1.08994 * 109.58866 * 186.60119 * 15 6 5 40 40 H 1.09001 * 109.58314 * 66.17643 * 15 6 5 41 41 H 0.96999 * 120.00087 * 335.15945 * 18 16 2 42 42 H 1.08002 * 119.52034 * 0.02562 * 22 21 19 43 43 H 1.08005 * 120.05870 * 180.02562 * 23 22 21 44 44 H 1.08003 * 120.03249 * 359.97438 * 25 24 23 45 45 H 1.08001 * 119.08005 * 179.54176 * 27 26 25 46 46 H 1.07993 * 120.66595 * 179.97438 * 28 27 26 47 47 H 1.07996 * 120.36643 * 359.97438 * 30 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8929 1.0279 0.0000 4 6 2.0399 -0.7208 1.2500 5 6 3.5714 -0.6886 1.2642 6 7 4.0679 -1.2487 -0.0001 7 6 4.9758 -2.2739 -0.0001 8 1 5.0086 -2.9661 0.8281 9 6 5.8539 -2.4233 -1.0648 10 7 6.0603 -1.4214 -1.8931 11 14 6.7426 -4.0460 -1.3219 12 1 6.3396 -5.0045 -0.2616 13 1 6.3851 -4.6009 -2.6521 14 1 8.2093 -3.8229 -1.2567 15 6 3.5713 -0.6884 -1.2643 16 6 2.0399 -0.7207 -1.2501 17 1 1.6572 -0.2211 -2.1401 18 7 1.5802 -2.1115 -1.2343 19 6 1.4547 -2.7929 -2.3904 20 8 1.7235 -2.2536 -3.4460 21 6 0.9912 -4.1972 -2.3745 22 6 0.6823 -4.8157 -1.1502 23 6 0.2540 -6.1041 -1.1067 24 6 0.1155 -6.8362 -2.2978 25 6 -0.3245 -8.1703 -2.3007 26 7 -0.4541 -8.8147 -3.4364 27 6 -0.1734 -8.2654 -4.6097 28 6 0.2643 -6.9798 -4.7153 29 6 0.4194 -6.2205 -3.5401 30 6 0.8638 -4.8921 -3.5661 31 1 -0.3633 -1.0276 -0.0005 32 1 -0.3634 0.5132 0.8903 33 1 -0.3633 0.5144 -0.8897 34 1 1.6978 -1.7556 1.2382 35 1 1.6572 -0.2213 2.1401 36 1 3.9417 -1.2845 2.0983 37 1 3.9142 0.3409 1.3673 38 1 6.6742 -1.5257 -2.6369 39 1 3.9417 -1.2842 -2.0985 40 1 3.9142 0.3411 -1.3673 41 1 1.3660 -2.5421 -0.3919 42 1 0.7864 -4.2581 -0.2311 43 1 0.0204 -6.5649 -0.1582 44 1 -0.5667 -8.6617 -1.3699 45 1 -0.2948 -8.8538 -5.5072 46 1 0.4878 -6.5516 -5.6811 47 1 1.1006 -4.4139 -4.5050 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000968513994.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:26:08 Heat of formation + Delta-G solvation = 37.535753 kcal Electronic energy + Delta-G solvation = -29891.082393 eV Core-core repulsion = 26038.942294 eV Total energy + Delta-G solvation = -3852.140099 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -40.97222 -39.69185 -37.90616 -36.76111 -34.20978 -33.24220 -32.84777 -31.45542 -31.00059 -29.72387 -29.13616 -27.37395 -25.03082 -24.02698 -23.87705 -22.55576 -22.09343 -21.14523 -20.86766 -18.79332 -18.36641 -17.69490 -16.80204 -16.60468 -16.18535 -15.20351 -15.04425 -14.98735 -14.57379 -14.27637 -14.07895 -13.85933 -13.77595 -13.71497 -13.62035 -13.31311 -13.04612 -12.89192 -12.67383 -12.42947 -12.03362 -11.97295 -11.61919 -11.43884 -11.19878 -11.12361 -10.93980 -10.75303 -10.54421 -10.36846 -10.23489 -9.96074 -9.78760 -9.69539 -9.56247 -9.42850 -9.16814 -8.48394 -8.42597 -8.20029 -6.67563 -5.78958 -3.21568 0.13959 0.60811 1.75384 2.59062 3.36503 3.44196 3.45890 3.49443 3.64381 4.05403 4.23255 4.39052 4.48605 4.60159 4.63709 4.84755 4.91339 5.08478 5.10336 5.17949 5.20013 5.30533 5.39587 5.44560 5.52359 5.55774 5.61341 5.81486 5.83130 5.88484 5.91076 5.96602 6.10667 6.17677 6.22605 6.26041 6.32335 6.40337 6.46134 6.50334 6.60255 6.63077 6.71108 6.84072 6.94760 7.33082 7.64709 7.78633 7.79081 8.01283 8.44417 8.67846 9.19574 9.83872 10.39117 11.28954 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.010533 B = 0.004138 C = 0.003433 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2657.648650 B = 6764.589107 C = 8154.246004 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.094 4.094 3 H 0.079 0.921 4 C -0.129 4.129 5 C 0.142 3.858 6 N -0.587 5.587 7 C -0.254 4.254 8 H 0.064 0.936 9 C 0.008 3.992 10 N -0.896 5.896 11 Si 0.894 3.106 12 H -0.278 1.278 13 H -0.289 1.289 14 H -0.290 1.290 15 C 0.160 3.840 16 C 0.125 3.875 17 H 0.077 0.923 18 N -0.689 5.689 19 C 0.552 3.448 20 O -0.540 6.540 21 C -0.098 4.098 22 C -0.087 4.087 23 C -0.094 4.094 24 C -0.100 4.100 25 C 0.142 3.858 26 N -0.488 5.488 27 C 0.068 3.932 28 C -0.143 4.143 29 C -0.033 4.033 30 C -0.050 4.050 31 H 0.050 0.950 32 H 0.050 0.950 33 H 0.050 0.950 34 H 0.052 0.948 35 H 0.054 0.946 36 H 0.054 0.946 37 H 0.018 0.982 38 H 0.254 0.746 39 H 0.098 0.902 40 H 0.026 0.974 41 H 0.394 0.606 42 H 0.131 0.869 43 H 0.138 0.862 44 H 0.164 0.836 45 H 0.153 0.847 46 H 0.140 0.860 47 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.475 -6.401 1.746 16.838 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.113 4.113 3 H 0.097 0.903 4 C -0.168 4.168 5 C 0.015 3.985 6 N -0.310 5.310 7 C -0.384 4.384 8 H 0.082 0.918 9 C -0.191 4.191 10 N -0.540 5.540 11 Si 0.724 3.276 12 H -0.203 1.203 13 H -0.216 1.216 14 H -0.217 1.217 15 C 0.033 3.967 16 C 0.019 3.981 17 H 0.095 0.905 18 N -0.339 5.339 19 C 0.338 3.662 20 O -0.418 6.418 21 C -0.103 4.103 22 C -0.106 4.106 23 C -0.114 4.114 24 C -0.102 4.102 25 C -0.029 4.029 26 N -0.196 5.196 27 C -0.075 4.075 28 C -0.163 4.163 29 C -0.038 4.038 30 C -0.069 4.069 31 H 0.069 0.931 32 H 0.069 0.931 33 H 0.070 0.930 34 H 0.071 0.929 35 H 0.073 0.927 36 H 0.072 0.928 37 H 0.036 0.964 38 H 0.064 0.936 39 H 0.116 0.884 40 H 0.044 0.956 41 H 0.231 0.769 42 H 0.149 0.851 43 H 0.156 0.844 44 H 0.181 0.819 45 H 0.170 0.830 46 H 0.158 0.842 47 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -15.422 -6.845 0.722 16.888 hybrid contribution 0.893 -0.106 0.206 0.923 sum -14.529 -6.951 0.929 16.133 Atomic orbital electron populations 1.21854 0.95965 1.01331 1.01047 1.21321 0.94607 0.99974 0.95434 0.90305 1.22084 0.99306 0.99284 0.96146 1.20937 0.90648 0.96595 0.90296 1.43991 1.48279 1.39588 0.99132 1.19109 1.10046 1.03060 1.06137 0.91811 1.24983 0.97155 0.97119 0.99838 1.70007 1.37399 1.28897 1.17725 0.86364 0.79317 0.84080 0.77886 1.20287 1.21570 1.21661 1.21209 0.86575 0.97859 0.91049 1.21843 0.99044 0.80135 0.97031 0.90472 1.45748 1.66072 1.14107 1.07989 1.18060 0.78253 0.85363 0.84503 1.90757 1.50709 1.69565 1.30787 1.20219 1.01007 0.95105 0.93938 1.21024 0.97007 0.95331 0.97223 1.20846 0.99316 0.94086 0.97165 1.19130 1.01211 0.95998 0.93845 1.23211 0.93225 0.89868 0.96643 1.67367 1.14911 1.38701 0.98586 1.22146 0.96776 0.93076 0.95521 1.22000 1.00213 0.95605 0.98452 1.18147 0.98299 0.94231 0.93149 1.21433 0.94671 0.91945 0.98836 0.93114 0.93081 0.93049 0.92890 0.92686 0.92786 0.96380 0.93633 0.88432 0.95602 0.76928 0.85121 0.84421 0.81900 0.82986 0.84194 0.83625 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.76 9.05 37.16 0.34 -1.42 16 2 C -0.09 -1.40 2.48 -90.58 -0.22 -1.63 16 3 H 0.08 1.19 8.14 -51.93 -0.42 0.77 16 4 C -0.13 -1.92 5.20 -26.61 -0.14 -2.06 16 5 C 0.14 2.72 6.52 -3.71 -0.02 2.70 16 6 N -0.59 -13.82 2.91 -172.33 -0.50 -14.33 16 7 C -0.25 -6.74 9.59 -15.05 -0.14 -6.88 16 8 H 0.06 1.67 7.89 -52.49 -0.41 1.25 16 9 C 0.01 0.23 4.91 -17.43 -0.09 0.15 16 10 N -0.90 -26.27 11.19 55.49 0.62 -25.65 16 11 Si 0.89 22.07 29.59 -169.99 -5.03 17.04 16 12 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 13 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16 14 H -0.29 -7.19 7.11 56.52 0.40 -6.78 16 15 C 0.16 3.74 4.91 -3.71 -0.02 3.72 16 16 C 0.13 2.30 2.24 -67.82 -0.15 2.14 16 17 H 0.08 1.47 7.58 -51.93 -0.39 1.08 16 18 N -0.69 -11.83 4.20 -54.62 -0.23 -12.05 16 19 C 0.55 10.28 7.74 -12.31 -0.10 10.19 16 20 O -0.54 -11.91 15.97 5.33 0.09 -11.82 16 21 C -0.10 -1.53 5.87 -104.94 -0.62 -2.15 16 22 C -0.09 -1.11 9.44 -39.55 -0.37 -1.48 16 23 C -0.09 -1.03 9.77 -39.59 -0.39 -1.42 16 24 C -0.10 -1.20 5.75 -106.78 -0.61 -1.82 16 25 C 0.14 1.54 11.04 -16.97 -0.19 1.35 16 26 N -0.49 -5.88 10.29 -13.15 -0.14 -6.01 16 27 C 0.07 0.74 11.07 -17.96 -0.20 0.54 16 28 C -0.14 -1.62 9.88 -39.35 -0.39 -2.00 16 29 C -0.03 -0.44 5.74 -106.83 -0.61 -1.05 16 30 C -0.05 -0.74 9.38 -38.78 -0.36 -1.10 16 31 H 0.05 0.60 7.54 -51.93 -0.39 0.20 16 32 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 33 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 34 H 0.05 0.77 6.40 -51.93 -0.33 0.43 16 35 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 36 H 0.05 1.02 7.93 -51.93 -0.41 0.61 16 37 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 38 H 0.25 7.28 8.31 -40.82 -0.34 6.94 16 39 H 0.10 2.72 6.03 -51.93 -0.31 2.40 16 40 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 41 H 0.39 5.96 4.62 -40.82 -0.19 5.77 16 42 H 0.13 1.44 6.34 -52.49 -0.33 1.10 16 43 H 0.14 1.03 8.06 -52.48 -0.42 0.61 16 44 H 0.16 1.21 8.06 -52.48 -0.42 0.79 16 45 H 0.15 1.23 8.06 -52.49 -0.42 0.81 16 46 H 0.14 1.26 8.06 -52.49 -0.42 0.84 16 47 H 0.15 2.15 7.62 -52.49 -0.40 1.75 16 LS Contribution 377.37 15.07 5.69 5.69 Total: -1.00 -32.89 377.37 -10.33 -43.22 By element: Atomic # 1 Polarization: 12.69 SS G_CDS: -6.54 Total: 6.15 kcal Atomic # 6 Polarization: 2.05 SS G_CDS: -4.29 Total: -2.24 kcal Atomic # 7 Polarization: -57.79 SS G_CDS: -0.25 Total: -58.04 kcal Atomic # 8 Polarization: -11.91 SS G_CDS: 0.09 Total: -11.82 kcal Atomic # 14 Polarization: 22.07 SS G_CDS: -5.03 Total: 17.04 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -32.89 -10.33 -43.22 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000968513994.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.755 kcal (2) G-P(sol) polarization free energy of solvation -32.887 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.868 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.332 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.219 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.536 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds