Wall clock time and date at job start Tue Mar 31 2020 22:26:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09004 * 109.44571 * 2 1 4 4 C 1.53041 * 109.46101 * 119.96990 * 2 1 3 5 5 C 1.53192 * 109.31204 * 181.38718 * 4 2 1 6 6 N 1.46924 * 108.77412 * 305.36536 * 5 4 2 7 7 C 1.36942 * 120.62479 * 233.62977 * 6 5 4 8 8 H 1.07992 * 120.00249 * 27.66299 * 7 6 5 9 9 C 1.38817 * 119.99560 * 207.65648 * 7 6 5 10 10 N 1.31620 * 119.99886 * 17.38139 * 9 7 6 11 11 Si 1.86796 * 119.99931 * 197.37400 * 9 7 6 12 12 H 1.48500 * 109.47153 * 0.02562 * 11 9 7 13 13 H 1.48499 * 109.47197 * 120.00590 * 11 9 7 14 14 H 1.48499 * 109.47107 * 240.00342 * 11 9 7 15 15 C 1.46923 * 118.74192 * 53.60800 * 6 5 4 16 16 C 1.53037 * 109.46147 * 240.03714 * 2 1 3 17 17 H 1.09003 * 109.52408 * 58.64641 * 16 2 1 18 18 N 1.46495 * 109.49680 * 298.56679 * 16 2 1 19 19 C 1.34777 * 119.99755 * 155.16123 * 18 16 2 20 20 O 1.21545 * 120.00297 * 0.02562 * 19 18 16 21 21 C 1.47896 * 119.99999 * 179.97438 * 19 18 16 22 22 C 1.40606 * 119.72739 * 0.02562 * 21 19 18 23 23 C 1.35842 * 120.95028 * 179.97438 * 22 21 19 24 24 C 1.40494 * 119.88096 * 0.02562 * 23 22 21 25 25 C 1.40484 * 121.83535 * 180.02562 * 24 23 22 26 26 N 1.31212 * 119.93697 * 179.27463 * 25 24 23 27 27 C 1.32557 * 122.80136 * 0.66819 * 26 25 24 28 28 C 1.36221 * 121.84967 * 359.56076 * 27 26 25 29 29 C 1.40767 * 118.67267 * 359.97438 * 28 27 26 30 30 C 1.38524 * 119.73082 * 179.97438 * 21 19 18 31 31 H 1.08996 * 109.46924 * 179.97438 * 1 2 3 32 32 H 1.09002 * 109.47307 * 299.96097 * 1 2 3 33 33 H 1.09003 * 109.47062 * 59.96293 * 1 2 3 34 34 H 1.08993 * 109.49541 * 61.43351 * 4 2 1 35 35 H 1.09005 * 109.52284 * 301.35135 * 4 2 1 36 36 H 1.08998 * 109.58305 * 185.57488 * 5 4 2 37 37 H 1.09001 * 109.58440 * 65.15089 * 5 4 2 38 38 H 0.97001 * 119.99678 * 179.97438 * 10 9 7 39 39 H 1.08994 * 109.58866 * 186.60119 * 15 6 5 40 40 H 1.09001 * 109.58314 * 66.17643 * 15 6 5 41 41 H 0.96999 * 120.00087 * 335.15945 * 18 16 2 42 42 H 1.08002 * 119.52034 * 0.02562 * 22 21 19 43 43 H 1.08005 * 120.05870 * 180.02562 * 23 22 21 44 44 H 1.08003 * 120.03249 * 359.97438 * 25 24 23 45 45 H 1.08001 * 119.08005 * 179.54176 * 27 26 25 46 46 H 1.07993 * 120.66595 * 179.97438 * 28 27 26 47 47 H 1.07996 * 120.36643 * 359.97438 * 30 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8929 1.0279 0.0000 4 6 2.0399 -0.7208 1.2500 5 6 3.5714 -0.6886 1.2642 6 7 4.0679 -1.2487 -0.0001 7 6 4.9758 -2.2739 -0.0001 8 1 5.0086 -2.9661 0.8281 9 6 5.8539 -2.4233 -1.0648 10 7 6.0603 -1.4214 -1.8931 11 14 6.7426 -4.0460 -1.3219 12 1 6.3396 -5.0045 -0.2616 13 1 6.3851 -4.6009 -2.6521 14 1 8.2093 -3.8229 -1.2567 15 6 3.5713 -0.6884 -1.2643 16 6 2.0399 -0.7207 -1.2501 17 1 1.6572 -0.2211 -2.1401 18 7 1.5802 -2.1115 -1.2343 19 6 1.4547 -2.7929 -2.3904 20 8 1.7235 -2.2536 -3.4460 21 6 0.9912 -4.1972 -2.3745 22 6 0.6823 -4.8157 -1.1502 23 6 0.2540 -6.1041 -1.1067 24 6 0.1155 -6.8362 -2.2978 25 6 -0.3245 -8.1703 -2.3007 26 7 -0.4541 -8.8147 -3.4364 27 6 -0.1734 -8.2654 -4.6097 28 6 0.2643 -6.9798 -4.7153 29 6 0.4194 -6.2205 -3.5401 30 6 0.8638 -4.8921 -3.5661 31 1 -0.3633 -1.0276 -0.0005 32 1 -0.3634 0.5132 0.8903 33 1 -0.3633 0.5144 -0.8897 34 1 1.6978 -1.7556 1.2382 35 1 1.6572 -0.2213 2.1401 36 1 3.9417 -1.2845 2.0983 37 1 3.9142 0.3409 1.3673 38 1 6.6742 -1.5257 -2.6369 39 1 3.9417 -1.2842 -2.0985 40 1 3.9142 0.3411 -1.3673 41 1 1.3660 -2.5421 -0.3919 42 1 0.7864 -4.2581 -0.2311 43 1 0.0204 -6.5649 -0.1582 44 1 -0.5667 -8.6617 -1.3699 45 1 -0.2948 -8.8538 -5.5072 46 1 0.4878 -6.5516 -5.6811 47 1 1.1006 -4.4139 -4.5050 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000968513994.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:26:06 Heat of formation + Delta-G solvation = 17.715049 kcal Electronic energy + Delta-G solvation = -29891.941883 eV Core-core repulsion = 26038.942294 eV Total energy + Delta-G solvation = -3852.999589 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -41.96331 -41.05356 -39.29061 -37.89530 -35.96850 -34.50630 -33.97192 -32.90492 -32.43150 -30.66811 -30.62236 -28.93284 -26.32441 -25.60541 -24.79592 -23.85820 -23.22485 -22.76120 -22.11061 -20.33550 -19.52722 -18.77096 -18.52613 -17.62828 -17.28663 -16.87675 -16.56642 -16.00848 -15.93869 -15.72054 -15.45010 -15.21965 -14.98107 -14.86635 -14.62872 -14.62297 -14.60716 -14.12080 -13.82000 -13.63587 -13.40688 -13.17234 -13.03356 -12.99213 -12.77248 -12.63352 -12.48531 -12.21068 -12.11373 -11.94544 -11.56115 -11.33039 -11.26965 -11.07279 -11.04022 -10.57130 -10.52680 -10.24992 -9.92811 -9.12641 -8.65600 -7.87768 -5.31539 -0.82796 -0.34301 0.80705 1.36587 1.40528 1.48107 1.51696 2.17851 2.41211 2.46761 3.05762 3.28717 3.47518 3.51931 3.57592 3.68335 3.74747 3.83123 3.88723 3.98284 4.01600 4.07864 4.13162 4.27681 4.51861 4.58465 4.64383 4.67758 4.71888 4.73494 4.82882 4.89204 4.93020 4.96851 5.02445 5.09549 5.18067 5.21645 5.24530 5.25582 5.28777 5.47108 5.51686 5.59137 5.60728 5.68866 5.71002 5.72797 6.38164 6.61142 6.94120 7.13517 7.26983 7.87355 8.37688 9.17369 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.010533 B = 0.004138 C = 0.003433 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2657.648650 B = 6764.589107 C = 8154.246004 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.087 4.087 3 H 0.077 0.923 4 C -0.116 4.116 5 C 0.135 3.865 6 N -0.600 5.600 7 C -0.245 4.245 8 H 0.073 0.927 9 C -0.050 4.050 10 N -0.934 5.934 11 Si 0.947 3.053 12 H -0.257 1.257 13 H -0.306 1.306 14 H -0.292 1.292 15 C 0.170 3.830 16 C 0.136 3.864 17 H 0.063 0.937 18 N -0.677 5.677 19 C 0.545 3.455 20 O -0.588 6.588 21 C -0.117 4.117 22 C -0.101 4.101 23 C -0.072 4.072 24 C -0.112 4.112 25 C 0.150 3.850 26 N -0.506 5.506 27 C 0.069 3.931 28 C -0.157 4.157 29 C -0.048 4.048 30 C -0.067 4.067 31 H 0.057 0.943 32 H 0.078 0.922 33 H 0.047 0.953 34 H 0.064 0.936 35 H 0.093 0.907 36 H 0.059 0.941 37 H 0.013 0.987 38 H 0.243 0.757 39 H 0.047 0.953 40 H -0.003 1.003 41 H 0.407 0.593 42 H 0.150 0.850 43 H 0.183 0.817 44 H 0.202 0.798 45 H 0.178 0.822 46 H 0.153 0.847 47 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.127 -8.706 4.973 20.715 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.107 4.107 3 H 0.095 0.905 4 C -0.155 4.155 5 C 0.010 3.990 6 N -0.323 5.323 7 C -0.375 4.375 8 H 0.091 0.909 9 C -0.245 4.245 10 N -0.581 5.581 11 Si 0.777 3.223 12 H -0.181 1.181 13 H -0.234 1.234 14 H -0.219 1.219 15 C 0.043 3.957 16 C 0.029 3.971 17 H 0.081 0.919 18 N -0.328 5.328 19 C 0.333 3.667 20 O -0.470 6.470 21 C -0.121 4.121 22 C -0.119 4.119 23 C -0.091 4.091 24 C -0.114 4.114 25 C -0.021 4.021 26 N -0.214 5.214 27 C -0.073 4.073 28 C -0.176 4.176 29 C -0.054 4.054 30 C -0.086 4.086 31 H 0.076 0.924 32 H 0.096 0.904 33 H 0.067 0.933 34 H 0.083 0.917 35 H 0.112 0.888 36 H 0.078 0.922 37 H 0.031 0.969 38 H 0.053 0.947 39 H 0.065 0.935 40 H 0.015 0.985 41 H 0.246 0.754 42 H 0.167 0.833 43 H 0.201 0.799 44 H 0.219 0.781 45 H 0.195 0.805 46 H 0.170 0.830 47 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -18.108 -9.163 4.021 20.689 hybrid contribution 1.699 0.574 -0.794 1.961 sum -16.409 -8.589 3.227 18.800 Atomic orbital electron populations 1.21771 0.92978 1.02246 1.02300 1.21282 0.96920 0.99173 0.93279 0.90513 1.21970 0.95507 1.00547 0.97443 1.21173 0.93797 0.95946 0.88115 1.44190 1.48049 1.39432 1.00637 1.19478 1.09090 1.03428 1.05509 0.90903 1.25655 0.98852 0.99547 1.00456 1.70174 1.38740 1.30745 1.18423 0.85493 0.78116 0.81463 0.77272 1.18054 1.23399 1.21912 1.20870 0.90041 0.95026 0.89740 1.21525 0.95256 0.81432 0.98842 0.91900 1.45604 1.65292 1.13548 1.08319 1.18685 0.77359 0.86662 0.84043 1.90721 1.52869 1.70948 1.32506 1.20120 1.02794 0.93456 0.95751 1.21176 0.97966 0.96430 0.96372 1.21306 0.96384 0.92920 0.98473 1.19454 1.01283 0.96887 0.93759 1.23822 0.91456 0.89125 0.97722 1.67469 1.15551 1.39157 0.99228 1.22576 0.95430 0.92927 0.96339 1.22199 1.00784 0.95969 0.98655 1.18337 0.98590 0.93599 0.94825 1.21406 0.95892 0.93094 0.98227 0.92366 0.90352 0.93338 0.91723 0.88837 0.92201 0.96945 0.94731 0.93454 0.98503 0.75389 0.83288 0.79929 0.78113 0.80487 0.82975 0.85299 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.84 9.05 71.98 0.65 -2.19 16 2 C -0.09 -2.44 2.48 -10.77 -0.03 -2.46 16 3 H 0.08 2.20 8.14 -2.39 -0.02 2.18 16 4 C -0.12 -3.05 5.20 30.67 0.16 -2.89 16 5 C 0.13 4.95 6.52 86.36 0.56 5.51 16 6 N -0.60 -28.53 2.91 -699.12 -2.04 -30.56 16 7 C -0.24 -13.05 9.59 84.03 0.81 -12.25 16 8 H 0.07 3.71 7.89 -2.91 -0.02 3.69 16 9 C -0.05 -2.85 4.91 84.86 0.42 -2.43 16 10 N -0.93 -57.83 11.19 21.65 0.24 -57.59 16 11 Si 0.95 46.51 29.59 68.60 2.03 48.54 16 12 H -0.26 -11.58 7.11 99.48 0.71 -10.87 16 13 H -0.31 -15.73 7.11 99.48 0.71 -15.03 16 14 H -0.29 -14.30 7.11 99.48 0.71 -13.60 16 15 C 0.17 8.39 4.91 86.36 0.42 8.81 16 16 C 0.14 5.09 2.24 45.07 0.10 5.19 16 17 H 0.06 2.54 7.58 -2.39 -0.02 2.52 16 18 N -0.68 -23.26 4.20 -445.01 -1.87 -25.13 16 19 C 0.54 21.16 7.74 86.80 0.67 21.83 16 20 O -0.59 -28.05 15.97 -3.86 -0.06 -28.12 16 21 C -0.12 -3.70 5.87 -20.07 -0.12 -3.82 16 22 C -0.10 -2.35 9.44 22.29 0.21 -2.14 16 23 C -0.07 -1.29 9.77 22.26 0.22 -1.07 16 24 C -0.11 -2.40 5.75 -21.26 -0.12 -2.52 16 25 C 0.15 2.70 11.04 85.33 0.94 3.64 16 26 N -0.51 -10.76 10.29 -195.50 -2.01 -12.78 16 27 C 0.07 1.38 11.07 84.11 0.93 2.31 16 28 C -0.16 -3.45 9.88 22.42 0.22 -3.23 16 29 C -0.05 -1.26 5.74 -21.29 -0.12 -1.38 16 30 C -0.07 -2.07 9.38 22.79 0.21 -1.86 16 31 H 0.06 1.15 7.54 -2.39 -0.02 1.13 16 32 H 0.08 1.28 8.14 -2.39 -0.02 1.26 16 33 H 0.05 1.06 8.14 -2.39 -0.02 1.04 16 34 H 0.06 1.59 6.40 -2.39 -0.02 1.57 16 35 H 0.09 1.87 8.14 -2.38 -0.02 1.85 16 36 H 0.06 2.12 7.93 -2.39 -0.02 2.10 16 37 H 0.01 0.48 8.14 -2.39 -0.02 0.46 16 38 H 0.24 14.91 8.31 -92.71 -0.77 14.14 16 39 H 0.05 2.82 6.03 -2.39 -0.01 2.81 16 40 H 0.00 -0.16 8.14 -2.39 -0.02 -0.18 16 41 H 0.41 11.56 4.62 -92.71 -0.43 11.13 16 42 H 0.15 2.78 6.34 -2.91 -0.02 2.77 16 43 H 0.18 1.61 8.06 -2.91 -0.02 1.59 16 44 H 0.20 1.92 8.06 -2.91 -0.02 1.89 16 45 H 0.18 2.46 8.06 -2.91 -0.02 2.44 16 46 H 0.15 2.79 8.06 -2.91 -0.02 2.77 16 47 H 0.13 4.24 7.62 -2.91 -0.02 4.22 16 Total: -1.00 -77.71 377.37 2.99 -74.71 By element: Atomic # 1 Polarization: 21.31 SS G_CDS: 0.56 Total: 21.88 kcal Atomic # 6 Polarization: 2.91 SS G_CDS: 6.14 Total: 9.05 kcal Atomic # 7 Polarization: -120.39 SS G_CDS: -5.68 Total: -126.06 kcal Atomic # 8 Polarization: -28.05 SS G_CDS: -0.06 Total: -28.12 kcal Atomic # 14 Polarization: 46.51 SS G_CDS: 2.03 Total: 48.54 kcal Total: -77.71 2.99 -74.71 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000968513994.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.429 kcal (2) G-P(sol) polarization free energy of solvation -77.708 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.721 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.994 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.714 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.715 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds