Wall clock time and date at job start Tue Mar 31 2020 22:25:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08997 * 109.45014 * 2 1 4 4 C 1.53041 * 109.45997 * 119.96914 * 2 1 3 5 5 C 1.52757 * 109.38269 * 181.25956 * 4 2 1 6 6 N 1.46927 * 109.00935 * 305.58851 * 5 4 2 7 7 C 1.36938 * 120.62991 * 233.58501 * 6 5 4 8 8 H 1.08002 * 119.99864 * 152.50943 * 7 6 5 9 9 C 1.38813 * 119.99981 * 332.78113 * 7 6 5 10 10 N 1.31620 * 119.99609 * 159.13521 * 9 7 6 11 11 Si 1.86793 * 120.00026 * 339.13733 * 9 7 6 12 12 H 1.48507 * 109.47258 * 93.09371 * 11 9 7 13 13 H 1.48498 * 109.47125 * 213.08933 * 11 9 7 14 14 H 1.48504 * 109.47196 * 333.09570 * 11 9 7 15 15 C 1.46926 * 118.73934 * 53.30929 * 6 5 4 16 16 C 1.53040 * 109.45799 * 240.03521 * 2 1 3 17 17 H 1.08997 * 109.52954 * 298.58395 * 16 2 1 18 18 N 1.46508 * 109.49965 * 58.66498 * 16 2 1 19 19 C 1.34774 * 120.00196 * 204.83684 * 18 16 2 20 20 O 1.21499 * 120.00034 * 359.97438 * 19 18 16 21 21 C 1.48274 * 120.00118 * 179.97438 * 19 18 16 22 22 C 1.40271 * 119.24025 * 179.97438 * 21 19 18 23 23 C 1.36501 * 119.81385 * 179.97438 * 22 21 19 24 24 C 1.40750 * 118.24731 * 0.02562 * 23 22 21 25 25 C 1.40417 * 121.27816 * 180.02562 * 24 23 22 26 26 C 1.36132 * 119.65257 * 179.97438 * 25 24 23 27 27 C 1.39440 * 120.91450 * 359.97438 * 26 25 24 28 28 C 1.35996 * 121.08249 * 0.02562 * 27 26 25 29 29 C 1.40822 * 119.73707 * 0.02562 * 28 27 26 30 30 N 1.31882 * 119.23354 * 359.72993 * 21 19 18 31 31 H 1.09005 * 109.46494 * 179.97438 * 1 2 3 32 32 H 1.08994 * 109.47018 * 299.96291 * 1 2 3 33 33 H 1.09000 * 109.47037 * 59.96739 * 1 2 3 34 34 H 1.08996 * 109.49657 * 301.33763 * 4 2 1 35 35 H 1.09000 * 109.49571 * 61.43546 * 4 2 1 36 36 H 1.08999 * 109.51074 * 185.70606 * 5 4 2 37 37 H 1.08997 * 109.43523 * 65.42127 * 5 4 2 38 38 H 0.97003 * 119.99825 * 179.97438 * 10 9 7 39 39 H 1.08997 * 109.58898 * 66.43000 * 15 6 5 40 40 H 1.08999 * 109.58704 * 186.71632 * 15 6 5 41 41 H 0.97000 * 119.99388 * 24.83235 * 18 16 2 42 42 H 1.07998 * 120.09266 * 0.02562 * 22 21 19 43 43 H 1.08007 * 120.87663 * 179.97438 * 23 22 21 44 44 H 1.08004 * 120.17469 * 359.96365 * 25 24 23 45 45 H 1.07999 * 119.54484 * 180.02562 * 26 25 24 46 46 H 1.07999 * 119.46023 * 179.97438 * 27 26 25 47 47 H 1.08003 * 120.13170 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8930 1.0278 0.0000 4 6 2.0399 -0.7208 1.2500 5 6 3.5672 -0.6924 1.2642 6 7 4.0679 -1.2488 -0.0001 7 6 4.9758 -2.2740 -0.0001 8 1 5.0134 -2.9619 -0.8319 9 6 5.8438 -2.4325 1.0715 10 7 6.4152 -3.5981 1.2887 11 14 6.2008 -0.9915 2.2052 12 1 5.2684 -1.0277 3.3605 13 1 7.5997 -1.0820 2.6952 14 1 6.0180 0.2807 1.4613 15 6 3.5714 -0.6885 -1.2643 16 6 2.0399 -0.7207 -1.2501 17 1 1.6978 -1.7556 -1.2390 18 7 1.5256 -0.0486 -2.4460 19 6 1.4002 -0.7312 -3.6013 20 8 1.7141 -1.9039 -3.6512 21 6 0.8792 -0.0511 -4.8115 22 6 0.7557 -0.7767 -6.0056 23 6 0.2769 -0.1624 -7.1266 24 6 -0.0797 1.1965 -7.0408 25 6 -0.5794 1.8908 -8.1543 26 6 -0.9145 3.2048 -8.0339 27 6 -0.7691 3.8727 -6.8185 28 6 -0.2885 3.2330 -5.7189 29 6 0.0705 1.8739 -5.8026 30 7 0.5380 1.2207 -4.7390 31 1 -0.3632 -1.0278 -0.0005 32 1 -0.3633 0.5132 0.8903 33 1 -0.3633 0.5143 -0.8897 34 1 1.6573 -0.2208 2.1398 35 1 1.6979 -1.7557 1.2382 36 1 3.9347 -1.2909 2.0978 37 1 3.9098 0.3367 1.3715 38 1 7.0220 -3.7088 2.0373 39 1 3.9143 0.3410 -1.3674 40 1 3.9438 -1.2830 -2.0987 41 1 1.2753 0.8877 -2.4062 42 1 1.0379 -1.8187 -6.0378 43 1 0.1752 -0.7045 -8.0552 44 1 -0.6971 1.3852 -9.1013 45 1 -1.2991 3.7370 -8.8913 46 1 -1.0418 4.9154 -6.7496 47 1 -0.1825 3.7652 -4.7851 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000968578513.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:25:17 Heat of formation + Delta-G solvation = 43.782631 kcal Electronic energy + Delta-G solvation = -28948.824974 eV Core-core repulsion = 25096.955760 eV Total energy + Delta-G solvation = -3851.869214 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -41.27004 -39.73815 -38.06238 -37.01102 -34.70668 -33.92380 -33.03249 -31.38405 -31.10261 -30.42738 -29.24945 -27.62004 -25.49477 -24.11247 -23.73667 -22.68274 -22.46214 -21.26483 -20.61947 -19.76299 -18.41423 -17.94817 -17.48671 -16.78736 -15.77492 -15.60024 -15.30424 -15.15902 -14.89529 -14.73351 -14.42271 -14.15498 -13.87253 -13.74010 -13.55258 -13.44689 -13.36767 -13.17720 -12.61114 -12.17063 -12.10466 -12.04891 -11.99492 -11.85711 -11.64073 -11.26764 -10.94163 -10.92200 -10.86686 -10.62142 -10.32581 -10.09364 -9.91248 -9.71971 -9.62738 -9.40145 -9.14898 -8.95226 -8.66262 -8.47817 -6.93708 -5.89300 -3.25444 -0.11617 0.35781 1.59798 2.23064 3.11384 3.15391 3.34708 3.51388 3.54685 3.80898 3.85529 4.18494 4.40039 4.44779 4.57155 4.60270 4.76723 4.78853 4.96928 4.99758 5.06727 5.12952 5.18674 5.30005 5.39036 5.47506 5.57553 5.64306 5.71208 5.78960 5.85163 5.88499 5.94950 5.97627 6.02212 6.06400 6.11720 6.16245 6.31837 6.38427 6.42649 6.52947 6.55371 6.63817 6.68270 6.79982 6.98077 7.34439 7.72833 8.00867 8.31494 8.39859 8.99281 9.76949 10.12763 11.26650 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.019475 B = 0.002587 C = 0.002479 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1437.423987 B =10822.247443 C =11290.675155 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.091 4.091 3 H 0.069 0.931 4 C -0.126 4.126 5 C 0.121 3.879 6 N -0.601 5.601 7 C -0.257 4.257 8 H 0.087 0.913 9 C 0.023 3.977 10 N -0.908 5.908 11 Si 0.883 3.117 12 H -0.289 1.289 13 H -0.304 1.304 14 H -0.271 1.271 15 C 0.144 3.856 16 C 0.129 3.871 17 H 0.093 0.907 18 N -0.698 5.698 19 C 0.563 3.437 20 O -0.522 6.522 21 C 0.126 3.874 22 C -0.123 4.123 23 C -0.063 4.063 24 C -0.090 4.090 25 C -0.100 4.100 26 C -0.111 4.111 27 C -0.106 4.106 28 C -0.085 4.085 29 C 0.124 3.876 30 N -0.445 5.445 31 H 0.054 0.946 32 H 0.053 0.947 33 H 0.051 0.949 34 H 0.060 0.940 35 H 0.068 0.932 36 H 0.075 0.925 37 H 0.025 0.975 38 H 0.262 0.738 39 H 0.023 0.977 40 H 0.068 0.932 41 H 0.406 0.594 42 H 0.153 0.847 43 H 0.146 0.854 44 H 0.132 0.868 45 H 0.128 0.872 46 H 0.131 0.869 47 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.418 15.236 -16.991 29.326 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.111 4.111 3 H 0.088 0.912 4 C -0.166 4.166 5 C -0.004 4.004 6 N -0.324 5.324 7 C -0.385 4.385 8 H 0.104 0.896 9 C -0.176 4.176 10 N -0.551 5.551 11 Si 0.714 3.286 12 H -0.216 1.216 13 H -0.232 1.232 14 H -0.196 1.196 15 C 0.017 3.983 16 C 0.024 3.976 17 H 0.111 0.889 18 N -0.348 5.348 19 C 0.346 3.654 20 O -0.396 6.396 21 C -0.028 4.028 22 C -0.144 4.144 23 C -0.089 4.089 24 C -0.092 4.092 25 C -0.119 4.119 26 C -0.129 4.129 27 C -0.126 4.126 28 C -0.103 4.103 29 C 0.000 4.000 30 N -0.157 5.157 31 H 0.073 0.927 32 H 0.072 0.928 33 H 0.070 0.930 34 H 0.079 0.921 35 H 0.086 0.914 36 H 0.093 0.907 37 H 0.043 0.957 38 H 0.072 0.928 39 H 0.041 0.959 40 H 0.087 0.913 41 H 0.241 0.759 42 H 0.171 0.829 43 H 0.164 0.836 44 H 0.150 0.850 45 H 0.146 0.854 46 H 0.149 0.851 47 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -17.973 14.780 -16.127 28.311 hybrid contribution 0.082 0.816 -0.099 0.826 sum -17.891 15.596 -16.226 28.751 Atomic orbital electron populations 1.21845 0.95466 1.01837 1.01058 1.21298 0.95136 0.99637 0.94989 0.91228 1.22000 0.98292 1.00706 0.95579 1.21322 0.91786 0.97033 0.90255 1.44280 1.48495 1.40637 0.99030 1.18953 1.09757 1.02593 1.07240 0.89557 1.25251 0.97540 0.96664 0.98135 1.69850 1.32962 1.21781 1.30496 0.86948 0.76236 0.84870 0.80584 1.21636 1.23227 1.19611 1.21219 0.90206 0.96911 0.89993 1.21816 0.96466 0.97387 0.81903 0.88913 1.45938 1.64207 1.14958 1.09704 1.17871 0.78775 0.86139 0.82612 1.90842 1.49476 1.15256 1.84060 1.21524 0.96607 0.90006 0.94650 1.21813 0.98199 1.02477 0.91909 1.21477 0.95382 0.93028 0.99041 1.18990 1.00373 0.94851 0.95004 1.21010 0.98504 0.94829 0.97533 1.20997 0.99218 0.94703 0.97956 1.20936 0.98657 1.00459 0.92522 1.20894 0.97820 0.91890 0.99717 1.18863 0.98049 0.94572 0.88511 1.67849 1.09175 1.08280 1.30353 0.92706 0.92837 0.93007 0.92147 0.91354 0.90726 0.95678 0.92816 0.95882 0.91343 0.75895 0.82941 0.83642 0.85041 0.85397 0.85117 0.84386 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.83 9.02 37.16 0.34 -1.50 16 2 C -0.09 -1.40 2.27 -90.57 -0.21 -1.60 16 3 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 4 C -0.13 -2.20 5.34 -26.83 -0.14 -2.34 16 5 C 0.12 2.65 4.18 -3.93 -0.02 2.64 16 6 N -0.60 -14.70 2.78 -172.58 -0.48 -15.18 16 7 C -0.26 -7.44 10.03 -15.06 -0.15 -7.59 16 8 H 0.09 2.71 8.06 -52.49 -0.42 2.28 16 9 C 0.02 0.67 5.23 -17.43 -0.09 0.58 16 10 N -0.91 -28.42 13.97 55.49 0.78 -27.65 16 11 Si 0.88 22.70 24.35 -169.99 -4.14 18.56 16 12 H -0.29 -7.10 6.62 56.52 0.37 -6.72 16 13 H -0.30 -7.96 7.11 56.52 0.40 -7.56 16 14 H -0.27 -6.84 6.64 56.52 0.38 -6.47 16 15 C 0.14 3.03 6.09 -3.71 -0.02 3.01 16 16 C 0.13 2.26 2.06 -67.80 -0.14 2.12 16 17 H 0.09 1.86 7.58 -51.93 -0.39 1.47 16 18 N -0.70 -10.45 4.36 -54.49 -0.24 -10.69 16 19 C 0.56 9.03 7.78 -12.13 -0.09 8.93 16 20 O -0.52 -10.12 15.94 5.37 0.09 -10.04 16 21 C 0.13 1.70 6.75 -82.95 -0.56 1.14 16 22 C -0.12 -1.41 9.54 -39.44 -0.38 -1.79 16 23 C -0.06 -0.57 9.88 -39.26 -0.39 -0.96 16 24 C -0.09 -0.86 5.75 -106.72 -0.61 -1.47 16 25 C -0.10 -0.69 9.77 -39.52 -0.39 -1.08 16 26 C -0.11 -0.67 9.96 -39.89 -0.40 -1.06 16 27 C -0.11 -0.69 9.94 -39.94 -0.40 -1.08 16 28 C -0.08 -0.73 9.99 -39.41 -0.39 -1.12 16 29 C 0.12 1.36 6.61 -84.85 -0.56 0.80 16 30 N -0.44 -5.60 9.47 -7.54 -0.07 -5.67 16 31 H 0.05 0.73 8.14 -51.93 -0.42 0.30 16 32 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 33 H 0.05 0.61 7.35 -51.93 -0.38 0.22 16 34 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 35 H 0.07 1.26 8.14 -51.93 -0.42 0.83 16 36 H 0.07 1.79 4.49 -51.93 -0.23 1.56 16 37 H 0.03 0.54 7.08 -51.93 -0.37 0.17 16 38 H 0.26 7.76 8.31 -40.82 -0.34 7.43 16 39 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 40 H 0.07 1.57 7.93 -51.93 -0.41 1.15 16 41 H 0.41 5.27 7.60 -40.82 -0.31 4.96 16 42 H 0.15 1.68 7.60 -52.49 -0.40 1.28 16 43 H 0.15 0.82 8.06 -52.48 -0.42 0.40 16 44 H 0.13 0.58 8.06 -52.48 -0.42 0.16 16 45 H 0.13 0.44 8.06 -52.49 -0.42 0.02 16 46 H 0.13 0.52 8.06 -52.49 -0.42 0.09 16 47 H 0.14 1.03 8.06 -52.48 -0.42 0.60 16 LS Contribution 376.57 15.07 5.67 5.67 Total: -1.00 -34.12 376.57 -9.75 -43.88 By element: Atomic # 1 Polarization: 10.23 SS G_CDS: -6.76 Total: 3.47 kcal Atomic # 6 Polarization: 2.23 SS G_CDS: -4.60 Total: -2.37 kcal Atomic # 7 Polarization: -59.17 SS G_CDS: -0.01 Total: -59.18 kcal Atomic # 8 Polarization: -10.12 SS G_CDS: 0.09 Total: -10.04 kcal Atomic # 14 Polarization: 22.70 SS G_CDS: -4.14 Total: 18.56 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -34.12 -9.75 -43.88 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000968578513.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.659 kcal (2) G-P(sol) polarization free energy of solvation -34.123 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.535 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.753 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.876 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.783 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds