Wall clock time and date at job start Tue Mar 31 2020 22:25:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08997 * 109.45014 * 2 1 4 4 C 1.53041 * 109.45997 * 119.96914 * 2 1 3 5 5 C 1.52757 * 109.38269 * 181.25956 * 4 2 1 6 6 N 1.46927 * 109.00935 * 305.58851 * 5 4 2 7 7 C 1.36938 * 120.62991 * 233.58501 * 6 5 4 8 8 H 1.08002 * 119.99864 * 152.50943 * 7 6 5 9 9 C 1.38813 * 119.99981 * 332.78113 * 7 6 5 10 10 N 1.31620 * 119.99609 * 159.13521 * 9 7 6 11 11 Si 1.86793 * 120.00026 * 339.13733 * 9 7 6 12 12 H 1.48507 * 109.47258 * 93.09371 * 11 9 7 13 13 H 1.48498 * 109.47125 * 213.08933 * 11 9 7 14 14 H 1.48504 * 109.47196 * 333.09570 * 11 9 7 15 15 C 1.46926 * 118.73934 * 53.30929 * 6 5 4 16 16 C 1.53040 * 109.45799 * 240.03521 * 2 1 3 17 17 H 1.08997 * 109.52954 * 298.58395 * 16 2 1 18 18 N 1.46508 * 109.49965 * 58.66498 * 16 2 1 19 19 C 1.34774 * 120.00196 * 204.83684 * 18 16 2 20 20 O 1.21499 * 120.00034 * 359.97438 * 19 18 16 21 21 C 1.48274 * 120.00118 * 179.97438 * 19 18 16 22 22 C 1.40271 * 119.24025 * 179.97438 * 21 19 18 23 23 C 1.36501 * 119.81385 * 179.97438 * 22 21 19 24 24 C 1.40750 * 118.24731 * 0.02562 * 23 22 21 25 25 C 1.40417 * 121.27816 * 180.02562 * 24 23 22 26 26 C 1.36132 * 119.65257 * 179.97438 * 25 24 23 27 27 C 1.39440 * 120.91450 * 359.97438 * 26 25 24 28 28 C 1.35996 * 121.08249 * 0.02562 * 27 26 25 29 29 C 1.40822 * 119.73707 * 0.02562 * 28 27 26 30 30 N 1.31882 * 119.23354 * 359.72993 * 21 19 18 31 31 H 1.09005 * 109.46494 * 179.97438 * 1 2 3 32 32 H 1.08994 * 109.47018 * 299.96291 * 1 2 3 33 33 H 1.09000 * 109.47037 * 59.96739 * 1 2 3 34 34 H 1.08996 * 109.49657 * 301.33763 * 4 2 1 35 35 H 1.09000 * 109.49571 * 61.43546 * 4 2 1 36 36 H 1.08999 * 109.51074 * 185.70606 * 5 4 2 37 37 H 1.08997 * 109.43523 * 65.42127 * 5 4 2 38 38 H 0.97003 * 119.99825 * 179.97438 * 10 9 7 39 39 H 1.08997 * 109.58898 * 66.43000 * 15 6 5 40 40 H 1.08999 * 109.58704 * 186.71632 * 15 6 5 41 41 H 0.97000 * 119.99388 * 24.83235 * 18 16 2 42 42 H 1.07998 * 120.09266 * 0.02562 * 22 21 19 43 43 H 1.08007 * 120.87663 * 179.97438 * 23 22 21 44 44 H 1.08004 * 120.17469 * 359.96365 * 25 24 23 45 45 H 1.07999 * 119.54484 * 180.02562 * 26 25 24 46 46 H 1.07999 * 119.46023 * 179.97438 * 27 26 25 47 47 H 1.08003 * 120.13170 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8930 1.0278 0.0000 4 6 2.0399 -0.7208 1.2500 5 6 3.5672 -0.6924 1.2642 6 7 4.0679 -1.2488 -0.0001 7 6 4.9758 -2.2740 -0.0001 8 1 5.0134 -2.9619 -0.8319 9 6 5.8438 -2.4325 1.0715 10 7 6.4152 -3.5981 1.2887 11 14 6.2008 -0.9915 2.2052 12 1 5.2684 -1.0277 3.3605 13 1 7.5997 -1.0820 2.6952 14 1 6.0180 0.2807 1.4613 15 6 3.5714 -0.6885 -1.2643 16 6 2.0399 -0.7207 -1.2501 17 1 1.6978 -1.7556 -1.2390 18 7 1.5256 -0.0486 -2.4460 19 6 1.4002 -0.7312 -3.6013 20 8 1.7141 -1.9039 -3.6512 21 6 0.8792 -0.0511 -4.8115 22 6 0.7557 -0.7767 -6.0056 23 6 0.2769 -0.1624 -7.1266 24 6 -0.0797 1.1965 -7.0408 25 6 -0.5794 1.8908 -8.1543 26 6 -0.9145 3.2048 -8.0339 27 6 -0.7691 3.8727 -6.8185 28 6 -0.2885 3.2330 -5.7189 29 6 0.0705 1.8739 -5.8026 30 7 0.5380 1.2207 -4.7390 31 1 -0.3632 -1.0278 -0.0005 32 1 -0.3633 0.5132 0.8903 33 1 -0.3633 0.5143 -0.8897 34 1 1.6573 -0.2208 2.1398 35 1 1.6979 -1.7557 1.2382 36 1 3.9347 -1.2909 2.0978 37 1 3.9098 0.3367 1.3715 38 1 7.0220 -3.7088 2.0373 39 1 3.9143 0.3410 -1.3674 40 1 3.9438 -1.2830 -2.0987 41 1 1.2753 0.8877 -2.4062 42 1 1.0379 -1.8187 -6.0378 43 1 0.1752 -0.7045 -8.0552 44 1 -0.6971 1.3852 -9.1013 45 1 -1.2991 3.7370 -8.8913 46 1 -1.0418 4.9154 -6.7496 47 1 -0.1825 3.7652 -4.7851 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000968578513.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:25:16 Heat of formation + Delta-G solvation = 20.897367 kcal Electronic energy + Delta-G solvation = -28949.817354 eV Core-core repulsion = 25096.955760 eV Total energy + Delta-G solvation = -3852.861594 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -42.09415 -40.98156 -39.46143 -37.83201 -36.35681 -34.86623 -34.35897 -33.43170 -31.98349 -31.14882 -30.57289 -29.22060 -26.54724 -25.56249 -24.78881 -24.03326 -23.08128 -22.94821 -21.84056 -21.25674 -19.29203 -18.95487 -18.75403 -18.18275 -17.34349 -16.94032 -16.53616 -16.42567 -15.85901 -15.64311 -15.44257 -15.36382 -15.26987 -15.07375 -14.94325 -14.64304 -14.46943 -14.27959 -14.03517 -13.78475 -13.62623 -13.32367 -12.77459 -12.71873 -12.63363 -12.59774 -12.52288 -12.45649 -12.23254 -11.82817 -11.65114 -11.64165 -11.52349 -11.35755 -11.25519 -10.83792 -10.63053 -10.25104 -9.82983 -9.27219 -8.95989 -8.18801 -5.52859 -0.86484 -0.35474 0.91998 1.28992 1.36864 1.41073 1.51576 1.91973 2.20740 2.40162 2.88739 3.04113 3.07939 3.32803 3.56742 3.65013 3.69765 3.81667 3.86278 3.90327 3.98085 4.15395 4.25154 4.28378 4.36205 4.39089 4.48546 4.51106 4.54907 4.76699 4.79115 4.81405 4.89408 4.92120 4.95953 5.00289 5.04403 5.08507 5.10367 5.12626 5.30784 5.36970 5.38077 5.44088 5.49877 5.52459 5.82168 5.86489 6.08952 6.33020 6.66480 6.86693 7.09494 7.57350 7.95673 9.01455 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.019475 B = 0.002587 C = 0.002479 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1437.423987 B =10822.247443 C =11290.675155 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.084 4.084 3 H 0.091 0.909 4 C -0.119 4.119 5 C 0.114 3.886 6 N -0.615 5.615 7 C -0.256 4.256 8 H 0.037 0.963 9 C -0.036 4.036 10 N -0.958 5.958 11 Si 0.958 3.042 12 H -0.265 1.265 13 H -0.310 1.310 14 H -0.259 1.259 15 C 0.145 3.855 16 C 0.144 3.856 17 H 0.059 0.941 18 N -0.685 5.685 19 C 0.561 3.439 20 O -0.568 6.568 21 C 0.101 3.899 22 C -0.146 4.146 23 C -0.048 4.048 24 C -0.101 4.101 25 C -0.103 4.103 26 C -0.103 4.103 27 C -0.093 4.093 28 C -0.106 4.106 29 C 0.097 3.903 30 N -0.453 5.453 31 H 0.042 0.958 32 H 0.079 0.921 33 H 0.062 0.938 34 H 0.099 0.901 35 H 0.050 0.950 36 H 0.053 0.947 37 H 0.043 0.957 38 H 0.263 0.737 39 H 0.040 0.960 40 H 0.032 0.968 41 H 0.418 0.582 42 H 0.145 0.855 43 H 0.182 0.818 44 H 0.162 0.838 45 H 0.163 0.837 46 H 0.161 0.839 47 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.280 19.950 -18.134 34.346 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.103 4.103 3 H 0.109 0.891 4 C -0.159 4.159 5 C -0.010 4.010 6 N -0.340 5.340 7 C -0.386 4.386 8 H 0.055 0.945 9 C -0.231 4.231 10 N -0.604 5.604 11 Si 0.785 3.215 12 H -0.191 1.191 13 H -0.239 1.239 14 H -0.183 1.183 15 C 0.019 3.981 16 C 0.037 3.963 17 H 0.077 0.923 18 N -0.336 5.336 19 C 0.346 3.654 20 O -0.446 6.446 21 C -0.052 4.052 22 C -0.167 4.167 23 C -0.073 4.073 24 C -0.103 4.103 25 C -0.122 4.122 26 C -0.121 4.121 27 C -0.112 4.112 28 C -0.124 4.124 29 C -0.027 4.027 30 N -0.165 5.165 31 H 0.062 0.938 32 H 0.098 0.902 33 H 0.081 0.919 34 H 0.118 0.882 35 H 0.069 0.931 36 H 0.071 0.929 37 H 0.061 0.939 38 H 0.072 0.928 39 H 0.058 0.942 40 H 0.051 0.949 41 H 0.257 0.743 42 H 0.163 0.837 43 H 0.199 0.801 44 H 0.179 0.821 45 H 0.181 0.819 46 H 0.179 0.821 47 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -20.888 19.553 -17.275 33.423 hybrid contribution 0.876 -0.561 0.004 1.040 sum -20.012 18.992 -17.271 32.550 Atomic orbital electron populations 1.21768 0.92912 1.01742 1.02896 1.21271 0.97123 0.99747 0.92128 0.89090 1.21925 0.94938 1.00685 0.98327 1.21471 0.94809 0.96913 0.87857 1.44340 1.48267 1.40137 1.01276 1.18774 1.11064 1.02914 1.05802 0.94533 1.25972 0.97435 0.99255 1.00414 1.69999 1.34334 1.24085 1.31958 0.85748 0.75774 0.80971 0.78975 1.19145 1.23869 1.18296 1.21252 0.92716 0.96527 0.87620 1.21400 0.93794 0.96641 0.84415 0.92284 1.45736 1.63712 1.15363 1.08806 1.18375 0.77755 0.85704 0.83524 1.90808 1.51513 1.17366 1.84914 1.21091 0.99241 0.90890 0.93980 1.21812 1.00135 1.02342 0.92445 1.21854 0.93110 0.93095 0.99249 1.19309 1.00402 0.95123 0.95490 1.21381 0.97683 0.95392 0.97696 1.21488 0.97365 0.94431 0.98774 1.21376 0.96252 1.01779 0.91838 1.21088 0.99126 0.91110 1.01123 1.19321 0.98795 0.95717 0.88834 1.67723 1.09437 1.07688 1.31645 0.93835 0.90190 0.91947 0.88237 0.93117 0.92909 0.93895 0.92773 0.94240 0.94903 0.74339 0.83747 0.80092 0.82092 0.81927 0.82093 0.83873 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.08 9.02 71.98 0.65 -2.43 16 2 C -0.08 -2.39 2.27 -10.76 -0.02 -2.42 16 3 H 0.09 2.30 8.14 -2.39 -0.02 2.28 16 4 C -0.12 -3.94 5.34 30.53 0.16 -3.77 16 5 C 0.11 4.84 4.18 86.22 0.36 5.20 16 6 N -0.62 -31.08 2.78 -699.93 -1.94 -33.02 16 7 C -0.26 -15.72 10.03 84.03 0.84 -14.88 16 8 H 0.04 2.54 8.06 -2.91 -0.02 2.51 16 9 C -0.04 -2.22 5.23 84.86 0.44 -1.77 16 10 N -0.96 -62.91 13.97 21.65 0.30 -62.60 16 11 Si 0.96 47.70 24.35 68.60 1.67 49.37 16 12 H -0.27 -12.16 6.62 99.48 0.66 -11.50 16 13 H -0.31 -15.63 7.11 99.48 0.71 -14.93 16 14 H -0.26 -12.24 6.64 99.48 0.66 -11.58 16 15 C 0.15 6.40 6.09 86.36 0.53 6.93 16 16 C 0.14 5.18 2.06 45.07 0.09 5.27 16 17 H 0.06 2.55 7.58 -2.39 -0.02 2.53 16 18 N -0.69 -21.16 4.36 -444.61 -1.94 -23.09 16 19 C 0.56 19.33 7.78 86.91 0.68 20.01 16 20 O -0.57 -24.29 15.94 -3.71 -0.06 -24.35 16 21 C 0.10 2.85 6.75 42.30 0.29 3.14 16 22 C -0.15 -3.52 9.54 22.36 0.21 -3.31 16 23 C -0.05 -0.80 9.88 22.48 0.22 -0.58 16 24 C -0.10 -1.72 5.75 -21.22 -0.12 -1.85 16 25 C -0.10 -1.02 9.77 22.31 0.22 -0.80 16 26 C -0.10 -0.74 9.96 22.07 0.22 -0.52 16 27 C -0.09 -0.83 9.94 22.04 0.22 -0.61 16 28 C -0.11 -1.59 9.99 22.38 0.22 -1.37 16 29 C 0.10 2.03 6.61 40.47 0.27 2.30 16 30 N -0.45 -11.46 9.47 -177.76 -1.68 -13.14 16 31 H 0.04 1.09 8.14 -2.38 -0.02 1.07 16 32 H 0.08 1.45 8.14 -2.39 -0.02 1.43 16 33 H 0.06 1.30 7.35 -2.39 -0.02 1.28 16 34 H 0.10 2.56 8.14 -2.39 -0.02 2.54 16 35 H 0.05 1.85 8.14 -2.39 -0.02 1.83 16 36 H 0.05 2.48 4.49 -2.39 -0.01 2.46 16 37 H 0.04 1.70 7.08 -2.39 -0.02 1.68 16 38 H 0.26 16.25 8.31 -92.71 -0.77 15.48 16 39 H 0.04 1.61 8.14 -2.39 -0.02 1.59 16 40 H 0.03 1.64 7.93 -2.39 -0.02 1.62 16 41 H 0.42 10.68 7.60 -92.71 -0.70 9.98 16 42 H 0.14 3.55 7.60 -2.91 -0.02 3.53 16 43 H 0.18 1.56 8.06 -2.91 -0.02 1.54 16 44 H 0.16 0.61 8.06 -2.91 -0.02 0.58 16 45 H 0.16 0.10 8.06 -2.91 -0.02 0.08 16 46 H 0.16 0.45 8.06 -2.91 -0.02 0.43 16 47 H 0.14 1.87 8.06 -2.91 -0.02 1.85 16 Total: -1.00 -82.02 376.57 2.01 -80.01 By element: Atomic # 1 Polarization: 18.10 SS G_CDS: 0.19 Total: 18.29 kcal Atomic # 6 Polarization: 3.06 SS G_CDS: 5.48 Total: 8.54 kcal Atomic # 7 Polarization: -126.60 SS G_CDS: -5.26 Total: -131.86 kcal Atomic # 8 Polarization: -24.29 SS G_CDS: -0.06 Total: -24.35 kcal Atomic # 14 Polarization: 47.70 SS G_CDS: 1.67 Total: 49.37 kcal Total: -82.02 2.01 -80.01 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000968578513.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.908 kcal (2) G-P(sol) polarization free energy of solvation -82.025 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.883 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.014 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.010 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.897 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds