Wall clock time and date at job start Tue Mar 31 2020 22:26:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.08999 * 109.45123 * 2 1 4 4 C 1.53043 * 109.46492 * 240.03099 * 2 1 3 5 5 C 1.53188 * 109.31396 * 178.61774 * 4 2 1 6 6 N 1.46924 * 108.77978 * 54.63550 * 5 4 2 7 7 C 1.36928 * 120.63200 * 126.36821 * 6 5 4 8 8 H 1.08005 * 120.00034 * 208.39797 * 7 6 5 9 9 C 1.38815 * 120.00046 * 28.39844 * 7 6 5 10 10 N 1.31617 * 120.00102 * 16.49472 * 9 7 6 11 11 Si 1.86804 * 119.99975 * 196.49278 * 9 7 6 12 12 H 1.48499 * 109.46913 * 59.99921 * 11 9 7 13 13 H 1.48498 * 109.47178 * 179.97438 * 11 9 7 14 14 H 1.48497 * 109.47179 * 300.00289 * 11 9 7 15 15 C 1.46930 * 118.73763 * 306.39202 * 6 5 4 16 16 C 1.53038 * 109.45821 * 119.96187 * 2 1 3 17 17 H 1.08999 * 109.49872 * 61.40546 * 16 2 1 18 18 N 1.46501 * 109.50314 * 301.33793 * 16 2 1 19 19 C 1.34770 * 120.00384 * 154.99641 * 18 16 2 20 20 O 1.21598 * 120.00106 * 0.02562 * 19 18 16 21 21 C 1.47452 * 120.00045 * 180.02562 * 19 18 16 22 22 C 1.38868 * 120.45918 * 354.43512 * 21 19 18 23 23 C 1.38898 * 120.67171 * 180.02562 * 22 21 19 24 24 C 1.36373 * 121.27565 * 359.95192 * 23 22 21 25 25 C 1.40397 * 119.98560 * 0.02562 * 24 23 22 26 26 C 1.40469 * 121.95222 * 179.97438 * 25 24 23 27 27 N 1.31279 * 119.87970 * 180.02562 * 26 25 24 28 28 C 1.32554 * 122.73357 * 0.02562 * 27 26 25 29 29 C 1.36333 * 121.82034 * 0.02562 * 28 27 26 30 30 C 1.40290 * 118.69993 * 359.97438 * 29 28 27 31 31 H 1.09003 * 109.47541 * 300.04196 * 1 2 3 32 32 H 1.09002 * 109.47016 * 60.03465 * 1 2 3 33 33 H 1.09001 * 109.47639 * 180.02562 * 1 2 3 34 34 H 1.08995 * 109.49400 * 298.57079 * 4 2 1 35 35 H 1.09003 * 109.49602 * 58.66157 * 4 2 1 36 36 H 1.09004 * 109.58532 * 174.42540 * 5 4 2 37 37 H 1.09005 * 109.58533 * 294.70287 * 5 4 2 38 38 H 0.96994 * 119.99920 * 179.97438 * 10 9 7 39 39 H 1.08998 * 109.58316 * 293.82458 * 15 6 5 40 40 H 1.08999 * 109.58742 * 173.39423 * 15 6 5 41 41 H 0.97002 * 119.99176 * 335.00434 * 18 16 2 42 42 H 1.07996 * 119.65958 * 359.97438 * 22 21 19 43 43 H 1.08002 * 119.36004 * 179.97438 * 23 22 21 44 44 H 1.08007 * 120.00487 * 180.02562 * 24 23 22 45 45 H 1.07997 * 120.05982 * 0.02562 * 26 25 24 46 46 H 1.08007 * 119.08610 * 179.97438 * 28 27 26 47 47 H 1.08002 * 120.64597 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8929 1.0278 0.0000 4 6 2.0399 -0.7208 -1.2500 5 6 3.5714 -0.6886 -1.2641 6 7 4.0679 -1.2489 0.0002 7 6 4.9757 -2.2739 0.0002 8 1 5.0008 -2.9730 0.8232 9 6 5.8637 -2.4147 -1.0573 10 7 6.0649 -1.4118 -1.8857 11 14 6.7734 -4.0274 -1.3048 12 1 5.7920 -5.1224 -1.5123 13 1 7.6546 -3.9210 -2.4954 14 1 7.5961 -4.3210 -0.1040 15 6 3.5713 -0.6885 1.2644 16 6 2.0397 -0.7207 1.2501 17 1 1.6972 -1.7554 1.2387 18 7 1.5255 -0.0486 2.4460 19 6 1.3969 -0.7321 3.6004 20 8 1.7082 -1.9065 3.6496 21 6 0.8788 -0.0557 4.8039 22 6 0.6291 1.3103 4.7912 23 6 0.1415 1.9520 5.9224 24 6 -0.1070 1.2652 7.0742 25 6 0.1306 -0.1173 7.1319 26 6 -0.1101 -0.8649 8.2965 27 7 0.1270 -2.1561 8.3055 28 6 0.5930 -2.8066 7.2488 29 6 0.8593 -2.1703 6.0728 30 6 0.6304 -0.7888 5.9874 31 1 -0.3634 0.5145 0.8896 32 1 -0.3633 0.5133 -0.8903 33 1 -0.3634 -1.0276 0.0005 34 1 1.6978 -1.7556 -1.2382 35 1 1.6573 -0.2208 -2.1398 36 1 3.9417 -1.2846 -2.0983 37 1 3.9143 0.3406 -1.3698 38 1 6.6857 -1.5101 -2.6244 39 1 3.9142 0.3410 1.3674 40 1 3.9416 -1.2844 2.0986 41 1 1.2774 0.8883 2.4068 42 1 0.8167 1.8795 3.8928 43 1 -0.0449 3.0153 5.8892 44 1 -0.4864 1.7849 7.9417 45 1 -0.4896 -0.3784 9.1829 46 1 0.7673 -3.8700 7.3217 47 1 1.2390 -2.7190 5.2236 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000968652406.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:26:25 Heat of formation + Delta-G solvation = 21.452271 kcal Electronic energy + Delta-G solvation = -29272.205462 eV Core-core repulsion = 25419.367931 eV Total energy + Delta-G solvation = -3852.837531 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -42.11044 -40.84418 -39.23223 -38.11628 -36.27000 -34.63394 -33.87404 -33.05695 -32.25335 -31.19507 -30.08954 -28.91541 -26.08053 -25.60300 -24.77035 -24.36121 -23.37611 -22.70242 -21.68432 -20.94366 -19.08798 -18.83085 -18.71711 -17.59755 -17.21666 -17.08698 -16.67325 -16.23892 -16.14873 -15.67661 -15.43794 -15.38105 -15.16022 -14.88180 -14.75024 -14.57443 -14.34462 -14.13684 -13.59369 -13.51860 -13.24543 -13.14642 -13.04089 -12.90115 -12.76665 -12.68289 -12.66410 -12.34666 -12.05604 -11.97937 -11.67754 -11.42157 -11.28860 -11.17668 -10.93749 -10.62512 -10.34631 -10.19678 -10.10646 -9.11567 -8.71026 -7.93368 -5.39535 -0.87499 -0.13037 0.62692 1.42126 1.44175 1.51625 1.72496 2.02067 2.24874 2.47973 3.09661 3.20865 3.48037 3.49822 3.63777 3.70885 3.75279 3.79948 3.91507 3.95310 3.98609 4.08653 4.21539 4.40411 4.41784 4.47529 4.59302 4.64051 4.73342 4.74095 4.83018 4.89921 4.92874 4.95904 5.01563 5.06866 5.09936 5.16590 5.21772 5.27768 5.37863 5.42167 5.44660 5.53628 5.60178 5.69127 5.75359 5.79657 6.34230 6.51491 6.95643 7.10261 7.21375 7.79546 8.29417 9.12085 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.014586 B = 0.002957 C = 0.002618 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1919.243530 B = 9468.022616 C =10694.292898 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.082 4.082 3 H 0.084 0.916 4 C -0.123 4.123 5 C 0.172 3.828 6 N -0.606 5.606 7 C -0.271 4.271 8 H 0.051 0.949 9 C -0.041 4.041 10 N -0.928 5.928 11 Si 0.964 3.036 12 H -0.280 1.280 13 H -0.285 1.285 14 H -0.279 1.279 15 C 0.145 3.855 16 C 0.151 3.849 17 H 0.056 0.944 18 N -0.697 5.697 19 C 0.552 3.448 20 O -0.575 6.575 21 C -0.161 4.161 22 C -0.037 4.037 23 C -0.130 4.130 24 C -0.041 4.041 25 C -0.137 4.137 26 C 0.150 3.850 27 N -0.515 5.515 28 C 0.067 3.933 29 C -0.185 4.185 30 C -0.008 4.008 31 H 0.069 0.931 32 H 0.074 0.926 33 H 0.040 0.960 34 H 0.044 0.956 35 H 0.084 0.916 36 H 0.054 0.946 37 H 0.007 0.993 38 H 0.253 0.747 39 H 0.022 0.978 40 H 0.027 0.973 41 H 0.413 0.587 42 H 0.159 0.841 43 H 0.178 0.822 44 H 0.182 0.818 45 H 0.207 0.793 46 H 0.160 0.840 47 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.382 12.869 15.690 27.381 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.101 4.101 3 H 0.103 0.897 4 C -0.163 4.163 5 C 0.047 3.953 6 N -0.330 5.330 7 C -0.401 4.401 8 H 0.068 0.932 9 C -0.237 4.237 10 N -0.573 5.573 11 Si 0.792 3.208 12 H -0.206 1.206 13 H -0.210 1.210 14 H -0.205 1.205 15 C 0.018 3.982 16 C 0.045 3.955 17 H 0.074 0.926 18 N -0.348 5.348 19 C 0.342 3.658 20 O -0.457 6.457 21 C -0.164 4.164 22 C -0.057 4.057 23 C -0.147 4.147 24 C -0.060 4.060 25 C -0.139 4.139 26 C -0.021 4.021 27 N -0.223 5.223 28 C -0.075 4.075 29 C -0.205 4.205 30 C -0.014 4.014 31 H 0.088 0.912 32 H 0.093 0.907 33 H 0.059 0.941 34 H 0.063 0.937 35 H 0.103 0.897 36 H 0.072 0.928 37 H 0.025 0.975 38 H 0.062 0.938 39 H 0.040 0.960 40 H 0.046 0.954 41 H 0.252 0.748 42 H 0.176 0.824 43 H 0.195 0.805 44 H 0.200 0.800 45 H 0.223 0.777 46 H 0.177 0.823 47 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -18.143 11.427 16.230 26.892 hybrid contribution 1.348 -0.692 -1.331 2.017 sum -16.795 10.736 14.899 24.885 Atomic orbital electron populations 1.21779 0.92891 1.01635 1.02965 1.21237 0.96936 0.99478 0.92456 0.89748 1.22086 0.96675 0.99773 0.97727 1.20713 0.90655 0.95489 0.88427 1.44187 1.48286 1.39677 1.00831 1.19342 1.10383 1.03586 1.06822 0.93160 1.25711 0.98021 1.00403 0.99566 1.70141 1.38070 1.30569 1.18510 0.85401 0.78169 0.80031 0.77212 1.20580 1.21043 1.20528 1.21213 0.92883 0.95763 0.88354 1.21280 0.93657 0.96358 0.84235 0.92610 1.45754 1.65055 1.14912 1.09098 1.18564 0.77357 0.86076 0.83823 1.90625 1.52206 1.18136 1.84698 1.19761 1.07963 0.95680 0.92968 1.21948 0.91608 0.91506 1.00595 1.21339 0.99129 1.02648 0.91620 1.21722 0.93545 0.90687 1.00086 1.19332 1.03210 0.96891 0.94432 1.23939 0.92261 0.88835 0.97088 1.67473 1.13048 1.11545 1.30230 1.22460 0.95620 1.01027 0.88360 1.22809 1.01060 0.95539 1.01060 1.18201 0.96094 0.93697 0.93426 0.91195 0.90660 0.94070 0.93743 0.89707 0.92760 0.97521 0.93770 0.95982 0.95441 0.74801 0.82388 0.80505 0.80028 0.77688 0.82255 0.83487 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.97 9.02 71.98 0.65 -2.32 16 2 C -0.08 -2.39 2.27 -10.77 -0.02 -2.42 16 3 H 0.08 2.24 8.14 -2.39 -0.02 2.22 16 4 C -0.12 -4.41 5.36 30.67 0.16 -4.25 16 5 C 0.17 8.24 5.30 86.36 0.46 8.70 16 6 N -0.61 -31.90 2.99 -699.08 -2.09 -34.00 16 7 C -0.27 -15.98 9.58 84.04 0.81 -15.17 16 8 H 0.05 3.04 7.88 -2.91 -0.02 3.02 16 9 C -0.04 -2.37 4.93 84.86 0.42 -1.95 16 10 N -0.93 -55.34 11.19 21.65 0.24 -55.09 16 11 Si 0.96 46.76 29.59 68.60 2.03 48.79 16 12 H -0.28 -13.32 7.11 99.48 0.71 -12.61 16 13 H -0.28 -13.47 7.11 99.48 0.71 -12.76 16 14 H -0.28 -13.33 7.11 99.48 0.71 -12.62 16 15 C 0.14 6.50 6.09 86.36 0.53 7.03 16 16 C 0.15 5.33 2.06 45.07 0.09 5.42 16 17 H 0.06 2.37 7.58 -2.39 -0.02 2.35 16 18 N -0.70 -18.90 4.32 -445.41 -1.92 -20.83 16 19 C 0.55 17.45 7.70 86.67 0.67 18.12 16 20 O -0.58 -23.69 13.15 -4.03 -0.05 -23.74 16 21 C -0.16 -3.93 5.90 -19.92 -0.12 -4.05 16 22 C -0.04 -0.52 9.52 22.58 0.21 -0.31 16 23 C -0.13 -1.12 9.92 21.99 0.22 -0.90 16 24 C -0.04 -0.39 9.79 22.36 0.22 -0.17 16 25 C -0.14 -2.52 5.74 -21.33 -0.12 -2.64 16 26 C 0.15 2.63 11.05 85.32 0.94 3.57 16 27 N -0.51 -12.50 10.30 -195.39 -2.01 -14.51 16 28 C 0.07 1.81 11.07 84.14 0.93 2.74 16 29 C -0.19 -5.66 9.28 22.32 0.21 -5.45 16 30 C -0.01 -0.22 5.77 -21.12 -0.12 -0.34 16 31 H 0.07 1.23 7.36 -2.39 -0.02 1.21 16 32 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 33 H 0.04 1.01 8.14 -2.39 -0.02 1.00 16 34 H 0.04 1.71 8.14 -2.39 -0.02 1.69 16 35 H 0.08 2.55 8.14 -2.39 -0.02 2.53 16 36 H 0.05 2.96 6.06 -2.38 -0.01 2.94 16 37 H 0.01 0.33 8.14 -2.38 -0.02 0.31 16 38 H 0.25 14.53 8.31 -92.71 -0.77 13.76 16 39 H 0.02 0.96 8.14 -2.39 -0.02 0.95 16 40 H 0.03 1.36 7.93 -2.39 -0.02 1.34 16 41 H 0.41 7.59 6.38 -92.71 -0.59 7.00 16 42 H 0.16 1.32 6.42 -2.91 -0.02 1.30 16 43 H 0.18 0.11 8.06 -2.91 -0.02 0.09 16 44 H 0.18 0.11 8.06 -2.91 -0.02 0.08 16 45 H 0.21 1.57 8.06 -2.91 -0.02 1.54 16 46 H 0.16 3.75 8.06 -2.91 -0.02 3.73 16 47 H 0.15 5.33 5.06 -2.91 -0.01 5.31 16 Total: -1.00 -80.74 375.41 2.72 -78.02 By element: Atomic # 1 Polarization: 15.34 SS G_CDS: 0.40 Total: 15.74 kcal Atomic # 6 Polarization: -0.51 SS G_CDS: 6.13 Total: 5.62 kcal Atomic # 7 Polarization: -118.64 SS G_CDS: -5.78 Total: -124.43 kcal Atomic # 8 Polarization: -23.69 SS G_CDS: -0.05 Total: -23.74 kcal Atomic # 14 Polarization: 46.76 SS G_CDS: 2.03 Total: 48.79 kcal Total: -80.74 2.72 -78.02 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000968652406.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.473 kcal (2) G-P(sol) polarization free energy of solvation -80.745 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.728 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.724 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.021 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.452 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds