Wall clock time and date at job start Tue Mar 31 2020 22:27:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 109.44743 * 2 1 4 4 C 1.53035 * 109.45775 * 240.03721 * 2 1 3 5 5 C 1.53189 * 109.31413 * 178.61729 * 4 2 1 6 6 N 1.46923 * 108.77631 * 54.62898 * 5 4 2 7 7 C 1.36940 * 120.62803 * 126.41838 * 6 5 4 8 8 H 1.08004 * 119.99892 * 207.67781 * 7 6 5 9 9 C 1.38814 * 120.00265 * 27.67696 * 7 6 5 10 10 N 1.31612 * 119.99931 * 17.35595 * 9 7 6 11 11 Si 1.86801 * 120.00047 * 197.35790 * 9 7 6 12 12 H 1.48500 * 109.47011 * 59.99979 * 11 9 7 13 13 H 1.48495 * 109.47124 * 179.97438 * 11 9 7 14 14 H 1.48499 * 109.47079 * 300.00031 * 11 9 7 15 15 C 1.46931 * 118.74185 * 306.39830 * 6 5 4 16 16 C 1.53040 * 109.45863 * 119.96996 * 2 1 3 17 17 H 1.08997 * 109.49987 * 61.42963 * 16 2 1 18 18 N 1.46497 * 109.52302 * 301.35124 * 16 2 1 19 19 C 1.34779 * 120.00200 * 155.14653 * 18 16 2 20 20 O 1.21598 * 119.99886 * 0.02562 * 19 18 16 21 21 C 1.47447 * 119.99936 * 179.97438 * 19 18 16 22 22 C 1.38941 * 121.17191 * 0.02562 * 21 19 18 23 23 N 1.32201 * 121.31569 * 180.02562 * 22 21 19 24 24 C 1.31202 * 123.69801 * 359.97438 * 23 22 21 25 25 C 1.40382 * 120.91094 * 359.97438 * 24 23 22 26 26 C 1.40397 * 122.14301 * 180.02562 * 25 24 23 27 27 C 1.36239 * 119.48652 * 179.19484 * 26 25 24 28 28 C 1.39299 * 121.10197 * 0.77881 * 27 26 25 29 29 C 1.36434 * 120.94474 * 359.47754 * 28 27 26 30 30 C 1.39692 * 119.44060 * 359.97438 * 29 28 27 31 31 H 1.08993 * 109.47377 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.47124 * 299.96889 * 1 2 3 33 33 H 1.08996 * 109.46854 * 59.96240 * 1 2 3 34 34 H 1.09000 * 109.50141 * 58.66489 * 4 2 1 35 35 H 1.09004 * 109.50000 * 298.56272 * 4 2 1 36 36 H 1.09003 * 109.59325 * 174.42197 * 5 4 2 37 37 H 1.09004 * 109.58368 * 294.70276 * 5 4 2 38 38 H 0.97000 * 120.00190 * 179.97438 * 10 9 7 39 39 H 1.09000 * 109.58479 * 173.39649 * 15 6 5 40 40 H 1.08997 * 109.58267 * 293.81882 * 15 6 5 41 41 H 0.97004 * 120.00439 * 335.14664 * 18 16 2 42 42 H 1.07998 * 119.34420 * 0.02562 * 22 21 19 43 43 H 1.07995 * 119.54095 * 179.97438 * 24 23 22 44 44 H 1.08001 * 120.25369 * 359.96219 * 26 25 24 45 45 H 1.07994 * 119.44994 * 180.23471 * 27 26 25 46 46 H 1.07993 * 119.52639 * 179.44890 * 28 27 26 47 47 H 1.08002 * 120.28044 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8930 1.0278 0.0000 4 6 2.0398 -0.7207 -1.2501 5 6 3.5713 -0.6886 -1.2643 6 7 4.0678 -1.2488 -0.0001 7 6 4.9764 -2.2734 -0.0002 8 1 5.0095 -2.9658 0.8281 9 6 5.8548 -2.4221 -1.0647 10 7 6.0605 -1.4202 -1.8930 11 14 6.7449 -4.0442 -1.3216 12 1 5.7501 -5.1281 -1.5232 13 1 7.6182 -3.9455 -2.5186 14 1 7.5735 -4.3486 -0.1275 15 6 3.5713 -0.6886 1.2642 16 6 2.0399 -0.7208 1.2500 17 1 1.6978 -1.7557 1.2383 18 7 1.5256 -0.0495 2.4463 19 6 1.4002 -0.7329 3.6012 20 8 1.7143 -1.9065 3.6504 21 6 0.8831 -0.0570 4.8053 22 6 0.5175 1.2832 4.7767 23 7 0.0540 1.8921 5.8547 24 6 -0.0982 1.3008 7.0160 25 6 0.2320 -0.0532 7.1846 26 6 0.0790 -0.7117 8.4150 27 6 0.4010 -2.0318 8.5137 28 6 0.8948 -2.7359 7.4179 29 6 1.0610 -2.1257 6.2089 30 6 0.7300 -0.7757 6.0699 31 1 -0.3634 -1.0276 -0.0005 32 1 -0.3633 0.5133 0.8903 33 1 -0.3633 0.5144 -0.8896 34 1 1.6572 -0.2206 -2.1398 35 1 1.6978 -1.7556 -1.2384 36 1 3.9417 -1.2845 -2.0985 37 1 3.9143 0.3407 -1.3699 38 1 6.6746 -1.5239 -2.6366 39 1 3.9417 -1.2846 2.0983 40 1 3.9143 0.3408 1.3673 41 1 1.2753 0.8869 2.4072 42 1 0.6138 1.8385 3.8554 43 1 -0.4828 1.8636 7.8537 44 1 -0.3027 -0.1790 9.2735 45 1 0.2795 -2.5387 9.4595 46 1 1.1503 -3.7794 7.5270 47 1 1.4443 -2.6820 5.3663 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000968677891.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:27:26 Heat of formation + Delta-G solvation = 40.399158 kcal Electronic energy + Delta-G solvation = -29227.819139 eV Core-core repulsion = 25375.803207 eV Total energy + Delta-G solvation = -3852.015932 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -41.06877 -39.53012 -37.64777 -37.56260 -34.55685 -33.23569 -32.80703 -31.39200 -31.11495 -30.18509 -28.71744 -27.30170 -25.16782 -24.06266 -23.70771 -23.08604 -22.05115 -21.05616 -20.55150 -19.45171 -18.21307 -17.59424 -17.51200 -16.79558 -16.09381 -15.60244 -15.12240 -15.08531 -14.78292 -14.50689 -14.17411 -13.98516 -13.73058 -13.66736 -13.38337 -13.32929 -13.16573 -12.95631 -12.47693 -12.39890 -12.13614 -12.04070 -11.65883 -11.60467 -11.51755 -11.04839 -10.78440 -10.69066 -10.28964 -10.24603 -10.18834 -10.14286 -9.89178 -9.72181 -9.66716 -9.33182 -9.32339 -8.88449 -8.42786 -8.30262 -6.67712 -5.78105 -3.20096 -0.14998 0.65208 1.47952 2.66585 3.14532 3.19310 3.41422 3.46071 3.48996 3.89210 3.99601 4.28076 4.43569 4.45890 4.53316 4.63355 4.81625 4.94287 5.01262 5.10250 5.24636 5.26935 5.37352 5.39063 5.46450 5.52837 5.59358 5.72814 5.86242 5.88070 5.94109 6.04080 6.12591 6.15459 6.20435 6.26895 6.28676 6.34772 6.53287 6.59889 6.62354 6.69929 6.72216 6.82026 6.97648 7.35043 7.60284 7.64436 7.64972 7.83158 8.31695 8.46445 9.22415 9.84666 10.40178 11.30654 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.014462 B = 0.002964 C = 0.002601 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1935.659843 B = 9444.406663 C =10760.447601 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.091 4.091 3 H 0.068 0.932 4 C -0.133 4.133 5 C 0.167 3.833 6 N -0.587 5.587 7 C -0.252 4.252 8 H 0.066 0.934 9 C 0.003 3.997 10 N -0.904 5.904 11 Si 0.903 3.097 12 H -0.283 1.283 13 H -0.291 1.291 14 H -0.282 1.282 15 C 0.142 3.858 16 C 0.133 3.867 17 H 0.089 0.911 18 N -0.711 5.711 19 C 0.563 3.437 20 O -0.528 6.528 21 C -0.165 4.165 22 C 0.116 3.884 23 N -0.497 5.497 24 C 0.171 3.829 25 C -0.121 4.121 26 C -0.093 4.093 27 C -0.118 4.118 28 C -0.100 4.100 29 C -0.107 4.107 30 C 0.011 3.989 31 H 0.052 0.948 32 H 0.046 0.954 33 H 0.052 0.948 34 H 0.055 0.945 35 H 0.057 0.943 36 H 0.090 0.910 37 H 0.019 0.981 38 H 0.254 0.746 39 H 0.058 0.942 40 H 0.018 0.982 41 H 0.394 0.606 42 H 0.158 0.842 43 H 0.165 0.835 44 H 0.134 0.866 45 H 0.127 0.873 46 H 0.129 0.871 47 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.459 5.178 16.805 23.414 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.111 4.111 3 H 0.086 0.914 4 C -0.173 4.173 5 C 0.041 3.959 6 N -0.309 5.309 7 C -0.381 4.381 8 H 0.084 0.916 9 C -0.195 4.195 10 N -0.548 5.548 11 Si 0.733 3.267 12 H -0.210 1.210 13 H -0.216 1.216 14 H -0.209 1.209 15 C 0.014 3.986 16 C 0.028 3.972 17 H 0.107 0.893 18 N -0.361 5.361 19 C 0.349 3.651 20 O -0.406 6.406 21 C -0.170 4.170 22 C -0.028 4.028 23 N -0.204 5.204 24 C -0.001 4.001 25 C -0.123 4.123 26 C -0.113 4.113 27 C -0.136 4.136 28 C -0.119 4.119 29 C -0.125 4.125 30 C 0.005 3.995 31 H 0.071 0.929 32 H 0.065 0.935 33 H 0.071 0.929 34 H 0.073 0.927 35 H 0.076 0.924 36 H 0.108 0.892 37 H 0.037 0.963 38 H 0.064 0.936 39 H 0.077 0.923 40 H 0.035 0.965 41 H 0.228 0.772 42 H 0.175 0.825 43 H 0.182 0.818 44 H 0.152 0.848 45 H 0.144 0.856 46 H 0.147 0.853 47 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges -15.258 5.201 16.408 23.001 hybrid contribution 0.596 -1.089 -0.072 1.244 sum -14.662 4.112 16.336 22.333 Atomic orbital electron populations 1.21862 0.95967 1.01618 1.00765 1.21316 0.94577 0.99724 0.95438 0.91395 1.22245 1.00664 0.99564 0.94807 1.20849 0.87309 0.97357 0.90376 1.43984 1.48076 1.39781 0.99075 1.19180 1.09803 1.02885 1.06252 0.91599 1.25013 0.97192 0.97498 0.99837 1.70024 1.37760 1.29052 1.17995 0.86353 0.79238 0.83818 0.77306 1.20965 1.21647 1.20851 1.21188 0.89934 0.96721 0.90770 1.21839 0.96827 0.97009 0.81543 0.89306 1.46060 1.65444 1.14207 1.10393 1.17767 0.78330 0.86429 0.82580 1.90664 1.50119 1.15804 1.83982 1.22034 1.04952 0.95557 0.94428 1.22738 0.92764 0.90647 0.96669 1.67097 1.14121 1.39716 0.99444 1.23260 0.91533 0.90420 0.94860 1.19013 1.02952 0.95718 0.94638 1.20938 0.99504 0.94935 0.95883 1.21005 0.98895 0.94576 0.99101 1.21210 0.97447 1.00566 0.92688 1.21885 0.97387 0.93596 0.99587 1.18939 0.95440 0.94124 0.90969 0.92885 0.93467 0.92862 0.92651 0.92383 0.89218 0.96306 0.93596 0.92310 0.96460 0.77170 0.82532 0.81779 0.84836 0.85550 0.85309 0.81517 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.85 9.02 37.16 0.34 -1.52 16 2 C -0.09 -1.43 2.27 -90.58 -0.21 -1.64 16 3 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 4 C -0.13 -2.43 5.36 -26.62 -0.14 -2.58 16 5 C 0.17 3.89 5.31 -3.71 -0.02 3.87 16 6 N -0.59 -14.79 3.00 -172.32 -0.52 -15.30 16 7 C -0.25 -7.05 9.59 -15.06 -0.14 -7.20 16 8 H 0.07 1.86 7.89 -52.48 -0.41 1.44 16 9 C 0.00 0.08 4.91 -17.43 -0.09 0.00 16 10 N -0.90 -26.22 11.19 55.49 0.62 -25.60 16 11 Si 0.90 22.04 29.59 -169.99 -5.03 17.01 16 12 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 13 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 14 H -0.28 -6.85 7.11 56.52 0.40 -6.44 16 15 C 0.14 3.06 6.09 -3.71 -0.02 3.03 16 16 C 0.13 2.32 2.06 -67.81 -0.14 2.18 16 17 H 0.09 1.78 7.58 -51.93 -0.39 1.39 16 18 N -0.71 -10.11 4.33 -54.76 -0.24 -10.35 16 19 C 0.56 8.75 7.74 -12.51 -0.10 8.66 16 20 O -0.53 -9.93 13.40 5.28 0.07 -9.86 16 21 C -0.16 -2.20 6.07 -102.66 -0.62 -2.82 16 22 C 0.12 1.32 10.71 -17.13 -0.18 1.14 16 23 N -0.50 -5.57 10.22 -12.59 -0.13 -5.70 16 24 C 0.17 1.60 11.00 -17.01 -0.19 1.41 16 25 C -0.12 -1.27 5.74 -106.89 -0.61 -1.88 16 26 C -0.09 -0.75 9.82 -39.49 -0.39 -1.13 16 27 C -0.12 -0.96 9.94 -39.91 -0.40 -1.36 16 28 C -0.10 -1.01 9.96 -39.84 -0.40 -1.40 16 29 C -0.11 -1.40 9.32 -39.69 -0.37 -1.77 16 30 C 0.01 0.14 5.91 -104.74 -0.62 -0.48 16 31 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 32 H 0.05 0.53 7.35 -51.93 -0.38 0.15 16 33 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 34 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 35 H 0.06 1.11 8.14 -51.93 -0.42 0.68 16 36 H 0.09 2.36 6.04 -51.93 -0.31 2.04 16 37 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 38 H 0.25 7.14 8.31 -40.82 -0.34 6.80 16 39 H 0.06 1.36 7.93 -51.93 -0.41 0.95 16 40 H 0.02 0.38 8.14 -51.93 -0.42 -0.05 16 41 H 0.39 4.40 6.41 -40.82 -0.26 4.14 16 42 H 0.16 1.40 6.44 -52.49 -0.34 1.06 16 43 H 0.17 0.92 8.06 -52.49 -0.42 0.49 16 44 H 0.13 0.63 8.06 -52.49 -0.42 0.21 16 45 H 0.13 0.68 8.06 -52.49 -0.42 0.26 16 46 H 0.13 1.04 8.06 -52.49 -0.42 0.62 16 47 H 0.17 2.52 5.24 -52.49 -0.28 2.25 16 LS Contribution 376.26 15.07 5.67 5.67 Total: -1.00 -32.71 376.26 -10.42 -43.14 By element: Atomic # 1 Polarization: 11.04 SS G_CDS: -6.58 Total: 4.46 kcal Atomic # 6 Polarization: 0.83 SS G_CDS: -4.30 Total: -3.47 kcal Atomic # 7 Polarization: -56.69 SS G_CDS: -0.26 Total: -56.95 kcal Atomic # 8 Polarization: -9.93 SS G_CDS: 0.07 Total: -9.86 kcal Atomic # 14 Polarization: 22.04 SS G_CDS: -5.03 Total: 17.01 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -32.71 -10.42 -43.14 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000968677891.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.538 kcal (2) G-P(sol) polarization free energy of solvation -32.715 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.823 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.424 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.139 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.399 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds