Wall clock time and date at job start Tue Mar 31 2020 22:27:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 109.44743 * 2 1 4 4 C 1.53035 * 109.45775 * 240.03721 * 2 1 3 5 5 C 1.53189 * 109.31413 * 178.61729 * 4 2 1 6 6 N 1.46923 * 108.77631 * 54.62898 * 5 4 2 7 7 C 1.36940 * 120.62803 * 126.41838 * 6 5 4 8 8 H 1.08004 * 119.99892 * 207.67781 * 7 6 5 9 9 C 1.38814 * 120.00265 * 27.67696 * 7 6 5 10 10 N 1.31612 * 119.99931 * 17.35595 * 9 7 6 11 11 Si 1.86801 * 120.00047 * 197.35790 * 9 7 6 12 12 H 1.48500 * 109.47011 * 59.99979 * 11 9 7 13 13 H 1.48495 * 109.47124 * 179.97438 * 11 9 7 14 14 H 1.48499 * 109.47079 * 300.00031 * 11 9 7 15 15 C 1.46931 * 118.74185 * 306.39830 * 6 5 4 16 16 C 1.53040 * 109.45863 * 119.96996 * 2 1 3 17 17 H 1.08997 * 109.49987 * 61.42963 * 16 2 1 18 18 N 1.46497 * 109.52302 * 301.35124 * 16 2 1 19 19 C 1.34779 * 120.00200 * 155.14653 * 18 16 2 20 20 O 1.21598 * 119.99886 * 0.02562 * 19 18 16 21 21 C 1.47447 * 119.99936 * 179.97438 * 19 18 16 22 22 C 1.38941 * 121.17191 * 0.02562 * 21 19 18 23 23 N 1.32201 * 121.31569 * 180.02562 * 22 21 19 24 24 C 1.31202 * 123.69801 * 359.97438 * 23 22 21 25 25 C 1.40382 * 120.91094 * 359.97438 * 24 23 22 26 26 C 1.40397 * 122.14301 * 180.02562 * 25 24 23 27 27 C 1.36239 * 119.48652 * 179.19484 * 26 25 24 28 28 C 1.39299 * 121.10197 * 0.77881 * 27 26 25 29 29 C 1.36434 * 120.94474 * 359.47754 * 28 27 26 30 30 C 1.39692 * 119.44060 * 359.97438 * 29 28 27 31 31 H 1.08993 * 109.47377 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.47124 * 299.96889 * 1 2 3 33 33 H 1.08996 * 109.46854 * 59.96240 * 1 2 3 34 34 H 1.09000 * 109.50141 * 58.66489 * 4 2 1 35 35 H 1.09004 * 109.50000 * 298.56272 * 4 2 1 36 36 H 1.09003 * 109.59325 * 174.42197 * 5 4 2 37 37 H 1.09004 * 109.58368 * 294.70276 * 5 4 2 38 38 H 0.97000 * 120.00190 * 179.97438 * 10 9 7 39 39 H 1.09000 * 109.58479 * 173.39649 * 15 6 5 40 40 H 1.08997 * 109.58267 * 293.81882 * 15 6 5 41 41 H 0.97004 * 120.00439 * 335.14664 * 18 16 2 42 42 H 1.07998 * 119.34420 * 0.02562 * 22 21 19 43 43 H 1.07995 * 119.54095 * 179.97438 * 24 23 22 44 44 H 1.08001 * 120.25369 * 359.96219 * 26 25 24 45 45 H 1.07994 * 119.44994 * 180.23471 * 27 26 25 46 46 H 1.07993 * 119.52639 * 179.44890 * 28 27 26 47 47 H 1.08002 * 120.28044 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8930 1.0278 0.0000 4 6 2.0398 -0.7207 -1.2501 5 6 3.5713 -0.6886 -1.2643 6 7 4.0678 -1.2488 -0.0001 7 6 4.9764 -2.2734 -0.0002 8 1 5.0095 -2.9658 0.8281 9 6 5.8548 -2.4221 -1.0647 10 7 6.0605 -1.4202 -1.8930 11 14 6.7449 -4.0442 -1.3216 12 1 5.7501 -5.1281 -1.5232 13 1 7.6182 -3.9455 -2.5186 14 1 7.5735 -4.3486 -0.1275 15 6 3.5713 -0.6886 1.2642 16 6 2.0399 -0.7208 1.2500 17 1 1.6978 -1.7557 1.2383 18 7 1.5256 -0.0495 2.4463 19 6 1.4002 -0.7329 3.6012 20 8 1.7143 -1.9065 3.6504 21 6 0.8831 -0.0570 4.8053 22 6 0.5175 1.2832 4.7767 23 7 0.0540 1.8921 5.8547 24 6 -0.0982 1.3008 7.0160 25 6 0.2320 -0.0532 7.1846 26 6 0.0790 -0.7117 8.4150 27 6 0.4010 -2.0318 8.5137 28 6 0.8948 -2.7359 7.4179 29 6 1.0610 -2.1257 6.2089 30 6 0.7300 -0.7757 6.0699 31 1 -0.3634 -1.0276 -0.0005 32 1 -0.3633 0.5133 0.8903 33 1 -0.3633 0.5144 -0.8896 34 1 1.6572 -0.2206 -2.1398 35 1 1.6978 -1.7556 -1.2384 36 1 3.9417 -1.2845 -2.0985 37 1 3.9143 0.3407 -1.3699 38 1 6.6746 -1.5239 -2.6366 39 1 3.9417 -1.2846 2.0983 40 1 3.9143 0.3408 1.3673 41 1 1.2753 0.8869 2.4072 42 1 0.6138 1.8385 3.8554 43 1 -0.4828 1.8636 7.8537 44 1 -0.3027 -0.1790 9.2735 45 1 0.2795 -2.5387 9.4595 46 1 1.1503 -3.7794 7.5270 47 1 1.4443 -2.6820 5.3663 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000968677891.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:27:25 Heat of formation + Delta-G solvation = 20.310665 kcal Electronic energy + Delta-G solvation = -29228.690241 eV Core-core repulsion = 25375.803207 eV Total energy + Delta-G solvation = -3852.887035 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -41.97357 -40.75616 -39.13561 -38.34947 -36.24602 -34.64567 -33.74327 -33.05707 -32.17459 -31.27488 -30.04800 -28.92202 -26.28772 -25.72140 -24.50886 -24.20689 -23.29089 -22.70134 -21.79297 -20.97362 -19.08425 -18.73518 -18.55099 -18.39079 -17.21783 -16.81575 -16.63246 -16.27095 -15.98064 -15.68913 -15.45716 -15.39004 -15.15846 -14.81600 -14.75591 -14.52604 -14.39045 -14.14197 -13.67857 -13.57880 -13.23733 -13.17349 -13.15226 -12.90853 -12.75909 -12.68461 -12.42652 -12.34874 -12.05865 -11.97381 -11.68256 -11.43249 -11.29777 -11.10878 -11.02912 -10.62476 -10.41128 -10.20111 -10.08779 -9.14779 -8.72399 -7.93122 -5.38559 -0.97140 -0.13718 0.65939 1.42370 1.44737 1.52190 1.74347 1.98496 2.19778 2.48248 3.05771 3.20860 3.22282 3.50006 3.59310 3.69468 3.71466 3.74711 3.87629 3.97470 4.01223 4.08702 4.26813 4.31626 4.41122 4.47785 4.49909 4.62215 4.64157 4.73610 4.76838 4.89474 4.92399 5.00794 5.02788 5.04269 5.09940 5.17476 5.21881 5.39270 5.41106 5.43243 5.49452 5.53481 5.58487 5.60232 5.74931 5.89979 6.33801 6.46733 6.81577 7.09795 7.16600 7.79303 8.29462 9.12540 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.014462 B = 0.002964 C = 0.002601 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1935.659843 B = 9444.406663 C =10760.447601 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.083 4.083 3 H 0.082 0.918 4 C -0.122 4.122 5 C 0.172 3.828 6 N -0.606 5.606 7 C -0.271 4.271 8 H 0.052 0.948 9 C -0.042 4.042 10 N -0.928 5.928 11 Si 0.966 3.034 12 H -0.279 1.279 13 H -0.286 1.286 14 H -0.279 1.279 15 C 0.145 3.855 16 C 0.152 3.848 17 H 0.059 0.941 18 N -0.698 5.698 19 C 0.561 3.439 20 O -0.571 6.571 21 C -0.201 4.201 22 C 0.133 3.867 23 N -0.517 5.517 24 C 0.192 3.808 25 C -0.138 4.138 26 C -0.072 4.072 27 C -0.125 4.125 28 C -0.090 4.090 29 C -0.153 4.153 30 C -0.010 4.010 31 H 0.042 0.958 32 H 0.067 0.933 33 H 0.075 0.925 34 H 0.084 0.916 35 H 0.046 0.954 36 H 0.056 0.944 37 H 0.005 0.995 38 H 0.253 0.747 39 H 0.028 0.972 40 H 0.020 0.980 41 H 0.412 0.588 42 H 0.178 0.822 43 H 0.211 0.789 44 H 0.180 0.820 45 H 0.163 0.837 46 H 0.141 0.859 47 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.985 7.012 19.438 27.394 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.102 4.102 3 H 0.101 0.899 4 C -0.162 4.162 5 C 0.047 3.953 6 N -0.329 5.329 7 C -0.401 4.401 8 H 0.070 0.930 9 C -0.238 4.238 10 N -0.574 5.574 11 Si 0.793 3.207 12 H -0.205 1.205 13 H -0.211 1.211 14 H -0.205 1.205 15 C 0.018 3.982 16 C 0.046 3.954 17 H 0.077 0.923 18 N -0.350 5.350 19 C 0.350 3.650 20 O -0.452 6.452 21 C -0.206 4.206 22 C -0.011 4.011 23 N -0.225 5.225 24 C 0.021 3.979 25 C -0.140 4.140 26 C -0.091 4.091 27 C -0.142 4.142 28 C -0.109 4.109 29 C -0.170 4.170 30 C -0.015 4.015 31 H 0.062 0.938 32 H 0.086 0.914 33 H 0.094 0.906 34 H 0.103 0.897 35 H 0.064 0.936 36 H 0.074 0.926 37 H 0.023 0.977 38 H 0.062 0.938 39 H 0.047 0.953 40 H 0.038 0.962 41 H 0.250 0.750 42 H 0.194 0.806 43 H 0.228 0.772 44 H 0.197 0.803 45 H 0.180 0.820 46 H 0.159 0.841 47 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -17.818 7.075 19.058 27.032 hybrid contribution 1.377 -1.646 -0.686 2.253 sum -16.441 5.429 18.372 25.245 Atomic orbital electron populations 1.21779 0.92900 1.01719 1.02884 1.21247 0.96952 0.99448 0.92568 0.89949 1.22077 0.96649 0.99828 0.97608 1.20723 0.90686 0.95462 0.88473 1.44203 1.48235 1.39734 1.00772 1.19359 1.10723 1.03765 1.06272 0.93009 1.25714 0.98046 1.00506 0.99552 1.70155 1.38341 1.30588 1.18273 0.85381 0.78109 0.80010 0.77201 1.20517 1.21108 1.20471 1.21207 0.92869 0.95711 0.88450 1.21290 0.93678 0.96412 0.84036 0.92308 1.45784 1.65097 1.14914 1.09183 1.18247 0.77396 0.85995 0.83385 1.90659 1.51990 1.17872 1.84717 1.21806 1.08434 0.96630 0.93743 1.23035 0.90712 0.89656 0.97732 1.67254 1.15501 1.39737 1.00008 1.24046 0.88472 0.90012 0.95321 1.19329 1.03482 0.96401 0.94820 1.21489 0.96831 0.94836 0.95969 1.21393 0.98287 0.94991 0.99567 1.21496 0.95808 1.01347 0.92291 1.21674 1.00882 0.94404 1.00073 1.19190 0.95999 0.94309 0.91969 0.93837 0.91441 0.90648 0.89706 0.93551 0.92601 0.97657 0.93776 0.95285 0.96205 0.75026 0.80551 0.77222 0.80255 0.81963 0.84091 0.85051 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.15 9.02 71.98 0.65 -2.50 16 2 C -0.08 -2.53 2.27 -10.77 -0.02 -2.55 16 3 H 0.08 2.33 8.14 -2.39 -0.02 2.31 16 4 C -0.12 -4.47 5.36 30.67 0.16 -4.30 16 5 C 0.17 8.33 5.31 86.36 0.46 8.79 16 6 N -0.61 -32.24 3.00 -699.09 -2.09 -34.34 16 7 C -0.27 -16.04 9.59 84.03 0.81 -15.23 16 8 H 0.05 3.13 7.89 -2.91 -0.02 3.11 16 9 C -0.04 -2.45 4.91 84.86 0.42 -2.03 16 10 N -0.93 -55.75 11.19 21.65 0.24 -55.51 16 11 Si 0.97 46.81 29.59 68.60 2.03 48.84 16 12 H -0.28 -13.25 7.11 99.48 0.71 -12.54 16 13 H -0.29 -13.52 7.11 99.48 0.71 -12.81 16 14 H -0.28 -13.26 7.11 99.48 0.71 -12.56 16 15 C 0.14 6.63 6.09 86.36 0.53 7.16 16 16 C 0.15 5.53 2.06 45.07 0.09 5.62 16 17 H 0.06 2.52 7.58 -2.39 -0.02 2.51 16 18 N -0.70 -20.33 4.33 -445.43 -1.93 -22.26 16 19 C 0.56 18.61 7.74 86.67 0.67 19.28 16 20 O -0.57 -23.81 13.40 -4.03 -0.05 -23.87 16 21 C -0.20 -5.49 6.07 -18.60 -0.11 -5.60 16 22 C 0.13 2.85 10.71 84.81 0.91 3.76 16 23 N -0.52 -10.17 10.22 -193.73 -1.98 -12.15 16 24 C 0.19 2.87 11.00 85.31 0.94 3.81 16 25 C -0.14 -2.54 5.74 -21.33 -0.12 -2.66 16 26 C -0.07 -0.85 9.82 22.33 0.22 -0.63 16 27 C -0.12 -1.64 9.94 22.06 0.22 -1.42 16 28 C -0.09 -1.80 9.96 22.10 0.22 -1.58 16 29 C -0.15 -4.27 9.32 22.20 0.21 -4.06 16 30 C -0.01 -0.25 5.91 -19.94 -0.12 -0.37 16 31 H 0.04 1.11 8.14 -2.39 -0.02 1.09 16 32 H 0.07 1.31 7.35 -2.39 -0.02 1.30 16 33 H 0.07 1.47 8.14 -2.39 -0.02 1.45 16 34 H 0.08 2.61 8.14 -2.39 -0.02 2.59 16 35 H 0.05 1.80 8.14 -2.38 -0.02 1.78 16 36 H 0.06 3.07 6.04 -2.39 -0.01 3.06 16 37 H 0.01 0.27 8.14 -2.38 -0.02 0.25 16 38 H 0.25 14.62 8.31 -92.71 -0.77 13.85 16 39 H 0.03 1.46 7.93 -2.39 -0.02 1.44 16 40 H 0.02 0.90 8.14 -2.39 -0.02 0.88 16 41 H 0.41 8.78 6.41 -92.71 -0.59 8.19 16 42 H 0.18 2.80 6.44 -2.91 -0.02 2.78 16 43 H 0.21 1.06 8.06 -2.91 -0.02 1.04 16 44 H 0.18 0.47 8.06 -2.91 -0.02 0.45 16 45 H 0.16 0.98 8.06 -2.91 -0.02 0.96 16 46 H 0.14 2.28 8.06 -2.91 -0.02 2.25 16 47 H 0.13 4.57 5.24 -2.91 -0.02 4.56 16 Total: -1.00 -78.63 376.26 2.74 -75.89 By element: Atomic # 1 Polarization: 17.53 SS G_CDS: 0.40 Total: 17.93 kcal Atomic # 6 Polarization: -0.66 SS G_CDS: 6.12 Total: 5.46 kcal Atomic # 7 Polarization: -118.49 SS G_CDS: -5.76 Total: -124.25 kcal Atomic # 8 Polarization: -23.81 SS G_CDS: -0.05 Total: -23.87 kcal Atomic # 14 Polarization: 46.81 SS G_CDS: 2.03 Total: 48.84 kcal Total: -78.63 2.74 -75.89 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000968677891.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.202 kcal (2) G-P(sol) polarization free energy of solvation -78.627 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.575 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.736 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.891 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.311 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds