Wall clock time and date at job start Tue Mar 31 2020 22:27:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08995 * 109.45109 * 2 1 4 4 C 1.53043 * 109.45711 * 119.96374 * 2 1 3 5 5 C 1.53189 * 109.31192 * 181.38429 * 4 2 1 6 6 N 1.46927 * 108.77724 * 305.36600 * 5 4 2 7 7 C 1.36933 * 120.63252 * 233.58746 * 6 5 4 8 8 H 1.07996 * 120.00468 * 152.67908 * 7 6 5 9 9 C 1.38815 * 119.99636 * 332.94687 * 7 6 5 10 10 N 1.31621 * 119.99963 * 159.01605 * 9 7 6 11 11 Si 1.86800 * 120.00286 * 339.01663 * 9 7 6 12 12 H 1.48507 * 109.47088 * 93.11388 * 11 9 7 13 13 H 1.48497 * 109.47247 * 213.11454 * 11 9 7 14 14 H 1.48501 * 109.47096 * 333.11366 * 11 9 7 15 15 C 1.46928 * 118.73920 * 53.85788 * 6 5 4 16 16 C 1.53038 * 109.45881 * 240.03037 * 2 1 3 17 17 H 1.08994 * 109.50004 * 58.66695 * 16 2 1 18 18 N 1.46496 * 109.49920 * 298.60007 * 16 2 1 19 19 C 1.34778 * 120.00045 * 155.00711 * 18 16 2 20 20 O 1.21599 * 120.00230 * 359.97438 * 19 18 16 21 21 C 1.47445 * 120.00061 * 180.02562 * 19 18 16 22 22 C 1.38950 * 121.16979 * 359.97438 * 21 19 18 23 23 N 1.32196 * 121.31393 * 180.02562 * 22 21 19 24 24 C 1.31200 * 123.70008 * 0.02562 * 23 22 21 25 25 C 1.40376 * 120.91422 * 359.97438 * 24 23 22 26 26 C 1.40393 * 122.14356 * 180.02562 * 25 24 23 27 27 C 1.36234 * 119.48796 * 179.97438 * 26 25 24 28 28 C 1.39291 * 121.10163 * 359.97438 * 27 26 25 29 29 C 1.36437 * 120.95247 * 359.97438 * 28 27 26 30 30 C 1.39697 * 119.43534 * 359.74595 * 29 28 27 31 31 H 1.08999 * 109.47470 * 300.03771 * 1 2 3 32 32 H 1.09009 * 109.46938 * 60.03637 * 1 2 3 33 33 H 1.09003 * 109.47329 * 180.02562 * 1 2 3 34 34 H 1.09003 * 109.49785 * 61.43903 * 4 2 1 35 35 H 1.08998 * 109.50073 * 301.33814 * 4 2 1 36 36 H 1.08995 * 109.59014 * 185.57564 * 5 4 2 37 37 H 1.09004 * 109.58766 * 65.15529 * 5 4 2 38 38 H 0.97001 * 120.00543 * 179.97438 * 10 9 7 39 39 H 1.09005 * 109.58254 * 65.92849 * 15 6 5 40 40 H 1.09000 * 109.58471 * 186.35182 * 15 6 5 41 41 H 0.97003 * 120.00405 * 334.99704 * 18 16 2 42 42 H 1.07996 * 119.34520 * 359.97438 * 22 21 19 43 43 H 1.08002 * 119.53794 * 180.02562 * 24 23 22 44 44 H 1.08000 * 120.25785 * 359.97438 * 26 25 24 45 45 H 1.07995 * 119.44975 * 180.02562 * 27 26 25 46 46 H 1.08004 * 119.52578 * 180.02562 * 28 27 26 47 47 H 1.08001 * 120.28151 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8929 1.0277 0.0000 4 6 2.0397 -0.7207 1.2502 5 6 3.5712 -0.6886 1.2644 6 7 4.0678 -1.2489 0.0001 7 6 4.9763 -2.2735 0.0002 8 1 5.0133 -2.9624 -0.8307 9 6 5.8459 -2.4298 1.0708 10 7 6.4167 -3.5954 1.2902 11 14 6.2063 -0.9861 2.2000 12 1 5.2761 -1.0186 3.3572 13 1 7.6061 -1.0762 2.6874 14 1 6.0231 0.2843 1.4532 15 6 3.5756 -0.6850 -1.2642 16 6 2.0398 -0.7208 -1.2500 17 1 1.6572 -0.2209 -2.1398 18 7 1.5794 -2.1115 -1.2345 19 6 1.4509 -2.7917 -2.3909 20 8 1.7167 -2.2511 -3.4472 21 6 0.9870 -4.1912 -2.3754 22 6 0.6761 -4.8326 -1.1827 23 7 0.2604 -6.0874 -1.1654 24 6 0.1091 -6.8190 -2.2439 25 6 0.3879 -6.2949 -3.5159 26 6 0.2345 -7.0543 -4.6867 27 6 0.5203 -6.4909 -5.8937 28 6 0.9620 -5.1731 -5.9861 29 6 1.1211 -4.4063 -4.8688 30 6 0.8313 -4.9510 -3.6155 31 1 -0.3634 0.5144 0.8896 32 1 -0.3633 0.5133 -0.8904 33 1 -0.3634 -1.0277 0.0005 34 1 1.6977 -1.7556 1.2384 35 1 1.6571 -0.2207 2.1399 36 1 3.9415 -1.2844 2.0985 37 1 3.9142 0.3409 1.3675 38 1 7.0247 -3.7046 2.0381 39 1 3.9189 0.3449 -1.3631 40 1 3.9487 -1.2785 -2.0988 41 1 1.3671 -2.5428 -0.3920 42 1 0.7768 -4.2956 -0.2511 43 1 -0.2356 -7.8384 -2.1517 44 1 -0.1074 -8.0772 -4.6310 45 1 0.4017 -7.0754 -6.7940 46 1 1.1809 -4.7518 -6.9562 47 1 1.4638 -3.3856 -4.9531 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000968677894.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:27:37 Heat of formation + Delta-G solvation = 47.866663 kcal Electronic energy + Delta-G solvation = -30046.361940 eV Core-core repulsion = 26194.669823 eV Total energy + Delta-G solvation = -3851.692117 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -40.89863 -39.61316 -37.77391 -37.38298 -34.44941 -33.08723 -32.64479 -31.42753 -31.21027 -30.28551 -29.12288 -27.58742 -25.07013 -23.87836 -23.53101 -23.06884 -22.44593 -21.36325 -20.76646 -19.03215 -18.10225 -17.56913 -17.38475 -16.70061 -15.94953 -15.47227 -15.26672 -14.99269 -14.94100 -14.55278 -14.12309 -13.97404 -13.80841 -13.69276 -13.54622 -13.33466 -13.25369 -12.78752 -12.54782 -12.33132 -12.21486 -12.01624 -11.91457 -11.64950 -11.57615 -11.41878 -11.25589 -10.70983 -10.63524 -10.25893 -10.07103 -9.97434 -9.86493 -9.73817 -9.45225 -9.21741 -9.15042 -8.91164 -8.50713 -8.12750 -6.96513 -5.94974 -3.30883 0.05103 0.84292 1.64881 2.86001 3.28123 3.29575 3.42047 3.47547 3.49722 4.08307 4.23454 4.47358 4.51626 4.63479 4.64653 4.79350 4.92517 4.93843 5.00871 5.08822 5.13544 5.15720 5.18724 5.41155 5.44962 5.56226 5.69634 5.70125 5.70664 5.82239 5.90435 5.94170 6.00141 6.04274 6.06660 6.19025 6.28568 6.30043 6.34984 6.42090 6.49993 6.53170 6.59618 6.65428 6.73380 6.80020 6.94664 7.78354 7.85765 7.95602 8.32792 8.47348 8.93643 9.71649 10.07981 11.20920 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.013023 B = 0.003738 C = 0.003418 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2149.571271 B = 7488.556836 C = 8188.916968 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.095 4.095 3 H 0.081 0.919 4 C -0.131 4.131 5 C 0.123 3.877 6 N -0.601 5.601 7 C -0.256 4.256 8 H 0.083 0.917 9 C 0.024 3.976 10 N -0.907 5.907 11 Si 0.883 3.117 12 H -0.289 1.289 13 H -0.305 1.305 14 H -0.271 1.271 15 C 0.137 3.863 16 C 0.134 3.866 17 H 0.085 0.915 18 N -0.691 5.691 19 C 0.569 3.431 20 O -0.544 6.544 21 C -0.165 4.165 22 C 0.125 3.875 23 N -0.494 5.494 24 C 0.170 3.830 25 C -0.122 4.122 26 C -0.091 4.091 27 C -0.121 4.121 28 C -0.103 4.103 29 C -0.106 4.106 30 C 0.012 3.988 31 H 0.053 0.947 32 H 0.052 0.948 33 H 0.052 0.948 34 H 0.060 0.940 35 H 0.059 0.941 36 H 0.074 0.926 37 H 0.026 0.974 38 H 0.262 0.738 39 H 0.033 0.967 40 H 0.069 0.931 41 H 0.399 0.601 42 H 0.157 0.843 43 H 0.165 0.835 44 H 0.133 0.867 45 H 0.125 0.875 46 H 0.127 0.873 47 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.478 -1.731 -8.878 18.797 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.114 4.114 3 H 0.099 0.901 4 C -0.170 4.170 5 C -0.003 4.003 6 N -0.325 5.325 7 C -0.384 4.384 8 H 0.100 0.900 9 C -0.175 4.175 10 N -0.550 5.550 11 Si 0.713 3.287 12 H -0.217 1.217 13 H -0.233 1.233 14 H -0.196 1.196 15 C 0.010 3.990 16 C 0.028 3.972 17 H 0.103 0.897 18 N -0.341 5.341 19 C 0.356 3.644 20 O -0.424 6.424 21 C -0.170 4.170 22 C -0.019 4.019 23 N -0.201 5.201 24 C -0.002 4.002 25 C -0.124 4.124 26 C -0.111 4.111 27 C -0.139 4.139 28 C -0.122 4.122 29 C -0.124 4.124 30 C 0.007 3.993 31 H 0.072 0.928 32 H 0.071 0.929 33 H 0.071 0.929 34 H 0.078 0.922 35 H 0.078 0.922 36 H 0.092 0.908 37 H 0.044 0.956 38 H 0.072 0.928 39 H 0.051 0.949 40 H 0.088 0.912 41 H 0.236 0.764 42 H 0.174 0.826 43 H 0.182 0.818 44 H 0.151 0.849 45 H 0.143 0.857 46 H 0.145 0.855 47 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges -16.286 -1.645 -8.628 18.503 hybrid contribution 0.564 0.784 0.456 1.068 sum -15.721 -0.861 -8.172 17.739 Atomic orbital electron populations 1.21844 0.95461 1.01631 1.01274 1.21327 0.95108 0.99880 0.95057 0.90089 1.22096 0.98661 0.99943 0.96314 1.21373 0.91517 0.97079 0.90331 1.44322 1.48906 1.40155 0.99108 1.18867 1.09869 1.02541 1.07102 0.89965 1.25271 0.97473 0.96571 0.98184 1.69844 1.32838 1.21853 1.30468 0.86964 0.76277 0.84897 0.80522 1.21739 1.23292 1.19635 1.21428 0.90452 0.97175 0.89978 1.21645 0.97001 0.80658 0.97854 0.89733 1.45782 1.66100 1.13959 1.08275 1.17680 0.77631 0.84828 0.84247 1.90586 1.51914 1.69583 1.30329 1.21957 1.05312 0.95647 0.94070 1.22756 0.92129 0.90254 0.96804 1.67096 1.13642 1.06942 1.32390 1.23259 0.91408 0.99060 0.86466 1.19012 1.03321 0.94260 0.95782 1.20925 0.99375 0.99454 0.91354 1.20958 0.99457 0.95602 0.97868 1.21157 0.97959 0.94007 0.99092 1.21838 0.97284 1.02758 0.90499 1.18919 0.95392 0.91977 0.93009 0.92784 0.92931 0.92898 0.92172 0.92227 0.90823 0.95613 0.92821 0.94944 0.91242 0.76399 0.82565 0.81835 0.84913 0.85699 0.85526 0.81668 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.65 9.05 37.16 0.34 -1.31 16 2 C -0.09 -1.31 2.48 -90.58 -0.22 -1.54 16 3 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16 4 C -0.13 -2.05 5.20 -26.61 -0.14 -2.18 16 5 C 0.12 2.50 4.20 -3.71 -0.02 2.49 16 6 N -0.60 -13.65 2.68 -172.05 -0.46 -14.11 16 7 C -0.26 -7.02 10.03 -15.06 -0.15 -7.17 16 8 H 0.08 2.50 8.06 -52.49 -0.42 2.08 16 9 C 0.02 0.68 5.23 -17.43 -0.09 0.59 16 10 N -0.91 -27.71 13.97 55.49 0.78 -26.93 16 11 Si 0.88 22.11 24.35 -169.99 -4.14 17.97 16 12 H -0.29 -6.95 6.62 56.52 0.37 -6.57 16 13 H -0.30 -7.86 7.11 56.52 0.40 -7.46 16 14 H -0.27 -6.68 6.64 56.52 0.38 -6.30 16 15 C 0.14 2.69 6.16 -3.48 -0.02 2.67 16 16 C 0.13 2.14 2.24 -67.59 -0.15 1.99 16 17 H 0.08 1.32 7.57 -51.93 -0.39 0.93 16 18 N -0.69 -11.04 4.22 -54.54 -0.23 -11.27 16 19 C 0.57 9.74 7.74 -12.51 -0.10 9.65 16 20 O -0.54 -10.24 13.40 5.28 0.07 -10.17 16 21 C -0.16 -2.63 6.07 -102.66 -0.62 -3.25 16 22 C 0.12 1.87 10.71 -17.13 -0.18 1.69 16 23 N -0.49 -7.14 10.22 -12.59 -0.13 -7.27 16 24 C 0.17 2.04 11.00 -17.02 -0.19 1.86 16 25 C -0.12 -1.54 5.74 -106.89 -0.61 -2.15 16 26 C -0.09 -0.90 9.82 -39.49 -0.39 -1.28 16 27 C -0.12 -1.16 9.94 -39.91 -0.40 -1.55 16 28 C -0.10 -1.15 9.96 -39.84 -0.40 -1.55 16 29 C -0.11 -1.52 9.32 -39.69 -0.37 -1.89 16 30 C 0.01 0.19 5.91 -104.74 -0.62 -0.43 16 31 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 32 H 0.05 0.57 8.14 -51.92 -0.42 0.15 16 33 H 0.05 0.60 7.54 -51.93 -0.39 0.21 16 34 H 0.06 0.94 6.40 -51.93 -0.33 0.61 16 35 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 36 H 0.07 1.68 4.48 -51.93 -0.23 1.44 16 37 H 0.03 0.53 7.09 -51.93 -0.37 0.16 16 38 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 39 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 40 H 0.07 1.51 7.93 -51.93 -0.41 1.10 16 41 H 0.40 6.04 4.74 -40.82 -0.19 5.85 16 42 H 0.16 2.12 6.44 -52.49 -0.34 1.78 16 43 H 0.16 1.32 8.06 -52.49 -0.42 0.89 16 44 H 0.13 0.86 8.06 -52.49 -0.42 0.44 16 45 H 0.13 0.83 8.06 -52.49 -0.42 0.41 16 46 H 0.13 1.11 8.06 -52.48 -0.42 0.69 16 47 H 0.17 2.60 5.24 -52.49 -0.28 2.33 16 LS Contribution 366.75 15.07 5.53 5.53 Total: -1.00 -32.98 366.75 -9.27 -42.25 By element: Atomic # 1 Polarization: 13.75 SS G_CDS: -6.35 Total: 7.39 kcal Atomic # 6 Polarization: 0.94 SS G_CDS: -4.33 Total: -3.39 kcal Atomic # 7 Polarization: -59.53 SS G_CDS: -0.05 Total: -59.58 kcal Atomic # 8 Polarization: -10.24 SS G_CDS: 0.07 Total: -10.17 kcal Atomic # 14 Polarization: 22.11 SS G_CDS: -4.14 Total: 17.97 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -32.98 -9.27 -42.25 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000968677894.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.113 kcal (2) G-P(sol) polarization free energy of solvation -32.975 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.138 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.271 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.247 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.867 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds