Wall clock time and date at job start Tue Mar 31 2020 22:27:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08995 * 109.45109 * 2 1 4 4 C 1.53043 * 109.45711 * 119.96374 * 2 1 3 5 5 C 1.53189 * 109.31192 * 181.38429 * 4 2 1 6 6 N 1.46927 * 108.77724 * 305.36600 * 5 4 2 7 7 C 1.36933 * 120.63252 * 233.58746 * 6 5 4 8 8 H 1.07996 * 120.00468 * 152.67908 * 7 6 5 9 9 C 1.38815 * 119.99636 * 332.94687 * 7 6 5 10 10 N 1.31621 * 119.99963 * 159.01605 * 9 7 6 11 11 Si 1.86800 * 120.00286 * 339.01663 * 9 7 6 12 12 H 1.48507 * 109.47088 * 93.11388 * 11 9 7 13 13 H 1.48497 * 109.47247 * 213.11454 * 11 9 7 14 14 H 1.48501 * 109.47096 * 333.11366 * 11 9 7 15 15 C 1.46928 * 118.73920 * 53.85788 * 6 5 4 16 16 C 1.53038 * 109.45881 * 240.03037 * 2 1 3 17 17 H 1.08994 * 109.50004 * 58.66695 * 16 2 1 18 18 N 1.46496 * 109.49920 * 298.60007 * 16 2 1 19 19 C 1.34778 * 120.00045 * 155.00711 * 18 16 2 20 20 O 1.21599 * 120.00230 * 359.97438 * 19 18 16 21 21 C 1.47445 * 120.00061 * 180.02562 * 19 18 16 22 22 C 1.38950 * 121.16979 * 359.97438 * 21 19 18 23 23 N 1.32196 * 121.31393 * 180.02562 * 22 21 19 24 24 C 1.31200 * 123.70008 * 0.02562 * 23 22 21 25 25 C 1.40376 * 120.91422 * 359.97438 * 24 23 22 26 26 C 1.40393 * 122.14356 * 180.02562 * 25 24 23 27 27 C 1.36234 * 119.48796 * 179.97438 * 26 25 24 28 28 C 1.39291 * 121.10163 * 359.97438 * 27 26 25 29 29 C 1.36437 * 120.95247 * 359.97438 * 28 27 26 30 30 C 1.39697 * 119.43534 * 359.74595 * 29 28 27 31 31 H 1.08999 * 109.47470 * 300.03771 * 1 2 3 32 32 H 1.09009 * 109.46938 * 60.03637 * 1 2 3 33 33 H 1.09003 * 109.47329 * 180.02562 * 1 2 3 34 34 H 1.09003 * 109.49785 * 61.43903 * 4 2 1 35 35 H 1.08998 * 109.50073 * 301.33814 * 4 2 1 36 36 H 1.08995 * 109.59014 * 185.57564 * 5 4 2 37 37 H 1.09004 * 109.58766 * 65.15529 * 5 4 2 38 38 H 0.97001 * 120.00543 * 179.97438 * 10 9 7 39 39 H 1.09005 * 109.58254 * 65.92849 * 15 6 5 40 40 H 1.09000 * 109.58471 * 186.35182 * 15 6 5 41 41 H 0.97003 * 120.00405 * 334.99704 * 18 16 2 42 42 H 1.07996 * 119.34520 * 359.97438 * 22 21 19 43 43 H 1.08002 * 119.53794 * 180.02562 * 24 23 22 44 44 H 1.08000 * 120.25785 * 359.97438 * 26 25 24 45 45 H 1.07995 * 119.44975 * 180.02562 * 27 26 25 46 46 H 1.08004 * 119.52578 * 180.02562 * 28 27 26 47 47 H 1.08001 * 120.28151 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8929 1.0277 0.0000 4 6 2.0397 -0.7207 1.2502 5 6 3.5712 -0.6886 1.2644 6 7 4.0678 -1.2489 0.0001 7 6 4.9763 -2.2735 0.0002 8 1 5.0133 -2.9624 -0.8307 9 6 5.8459 -2.4298 1.0708 10 7 6.4167 -3.5954 1.2902 11 14 6.2063 -0.9861 2.2000 12 1 5.2761 -1.0186 3.3572 13 1 7.6061 -1.0762 2.6874 14 1 6.0231 0.2843 1.4532 15 6 3.5756 -0.6850 -1.2642 16 6 2.0398 -0.7208 -1.2500 17 1 1.6572 -0.2209 -2.1398 18 7 1.5794 -2.1115 -1.2345 19 6 1.4509 -2.7917 -2.3909 20 8 1.7167 -2.2511 -3.4472 21 6 0.9870 -4.1912 -2.3754 22 6 0.6761 -4.8326 -1.1827 23 7 0.2604 -6.0874 -1.1654 24 6 0.1091 -6.8190 -2.2439 25 6 0.3879 -6.2949 -3.5159 26 6 0.2345 -7.0543 -4.6867 27 6 0.5203 -6.4909 -5.8937 28 6 0.9620 -5.1731 -5.9861 29 6 1.1211 -4.4063 -4.8688 30 6 0.8313 -4.9510 -3.6155 31 1 -0.3634 0.5144 0.8896 32 1 -0.3633 0.5133 -0.8904 33 1 -0.3634 -1.0277 0.0005 34 1 1.6977 -1.7556 1.2384 35 1 1.6571 -0.2207 2.1399 36 1 3.9415 -1.2844 2.0985 37 1 3.9142 0.3409 1.3675 38 1 7.0247 -3.7046 2.0381 39 1 3.9189 0.3449 -1.3631 40 1 3.9487 -1.2785 -2.0988 41 1 1.3671 -2.5428 -0.3920 42 1 0.7768 -4.2956 -0.2511 43 1 -0.2356 -7.8384 -2.1517 44 1 -0.1074 -8.0772 -4.6310 45 1 0.4017 -7.0754 -6.7940 46 1 1.1809 -4.7518 -6.9562 47 1 1.4638 -3.3856 -4.9531 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000968677894.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:27:36 Heat of formation + Delta-G solvation = 26.496488 kcal Electronic energy + Delta-G solvation = -30047.288621 eV Core-core repulsion = 26194.669823 eV Total energy + Delta-G solvation = -3852.618797 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -41.97645 -40.87533 -39.17975 -38.34625 -36.12706 -34.42637 -33.71363 -33.39615 -32.16909 -31.54197 -30.29280 -29.09539 -26.28168 -25.45437 -24.54272 -24.36839 -23.61140 -22.94676 -21.94049 -20.46840 -19.21081 -18.69733 -18.61010 -18.34853 -17.22678 -16.99615 -16.68195 -16.29891 -16.06181 -15.71321 -15.42898 -15.29955 -15.20478 -15.09542 -14.71785 -14.61910 -14.41739 -14.24885 -13.82453 -13.70350 -13.60300 -13.17215 -13.11126 -12.96118 -12.90889 -12.66674 -12.43267 -12.32125 -12.22895 -11.85837 -11.58291 -11.39901 -11.18513 -11.09933 -11.03053 -10.74286 -10.39865 -10.13344 -10.06912 -9.14702 -8.87242 -8.16811 -5.48602 -0.95847 -0.13442 0.67498 1.28582 1.41490 1.50532 1.75629 2.11002 2.25530 2.40440 3.05547 3.06212 3.22196 3.30821 3.50168 3.64808 3.71064 3.76014 3.87584 3.89345 3.99192 4.01418 4.26890 4.29643 4.32759 4.47369 4.50753 4.53303 4.60761 4.67099 4.73087 4.76479 4.83769 4.93667 4.97247 5.00872 5.03786 5.09572 5.14542 5.18157 5.35389 5.40180 5.43064 5.49271 5.55018 5.63404 5.84860 5.91610 6.10249 6.49114 6.81473 6.90959 7.16944 7.61577 8.00382 9.03479 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.013023 B = 0.003738 C = 0.003418 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2149.571271 B = 7488.556836 C = 8188.916968 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.086 4.086 3 H 0.096 0.904 4 C -0.123 4.123 5 C 0.115 3.885 6 N -0.611 5.611 7 C -0.241 4.241 8 H 0.033 0.967 9 C -0.034 4.034 10 N -0.959 5.959 11 Si 0.953 3.047 12 H -0.268 1.268 13 H -0.316 1.316 14 H -0.261 1.261 15 C 0.136 3.864 16 C 0.141 3.859 17 H 0.090 0.910 18 N -0.688 5.688 19 C 0.564 3.436 20 O -0.571 6.571 21 C -0.200 4.200 22 C 0.124 3.876 23 N -0.521 5.521 24 C 0.185 3.815 25 C -0.140 4.140 26 C -0.075 4.075 27 C -0.123 4.123 28 C -0.089 4.089 29 C -0.148 4.148 30 C -0.010 4.010 31 H 0.075 0.925 32 H 0.059 0.941 33 H 0.049 0.951 34 H 0.055 0.945 35 H 0.092 0.908 36 H 0.050 0.950 37 H 0.037 0.963 38 H 0.261 0.739 39 H 0.047 0.953 40 H 0.033 0.967 41 H 0.402 0.598 42 H 0.159 0.841 43 H 0.210 0.790 44 H 0.178 0.822 45 H 0.166 0.834 46 H 0.148 0.852 47 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.198 -1.884 -8.961 21.270 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.105 4.105 3 H 0.114 0.886 4 C -0.162 4.162 5 C -0.009 4.009 6 N -0.335 5.335 7 C -0.370 4.370 8 H 0.051 0.949 9 C -0.229 4.229 10 N -0.605 5.605 11 Si 0.782 3.218 12 H -0.195 1.195 13 H -0.245 1.245 14 H -0.185 1.185 15 C 0.010 3.990 16 C 0.035 3.965 17 H 0.108 0.892 18 N -0.338 5.338 19 C 0.352 3.648 20 O -0.453 6.453 21 C -0.205 4.205 22 C -0.020 4.020 23 N -0.229 5.229 24 C 0.014 3.986 25 C -0.142 4.142 26 C -0.094 4.094 27 C -0.140 4.140 28 C -0.108 4.108 29 C -0.166 4.166 30 C -0.016 4.016 31 H 0.094 0.906 32 H 0.078 0.922 33 H 0.068 0.932 34 H 0.074 0.926 35 H 0.111 0.889 36 H 0.069 0.931 37 H 0.055 0.945 38 H 0.070 0.930 39 H 0.065 0.935 40 H 0.052 0.948 41 H 0.240 0.760 42 H 0.176 0.824 43 H 0.227 0.773 44 H 0.196 0.804 45 H 0.183 0.817 46 H 0.166 0.834 47 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -19.057 -1.757 -8.708 21.026 hybrid contribution 1.375 0.674 0.260 1.553 sum -17.682 -1.083 -8.447 19.626 Atomic orbital electron populations 1.21768 0.92997 1.01951 1.02698 1.21302 0.96991 0.99744 0.92424 0.88624 1.22015 0.94867 1.00636 0.98682 1.21489 0.94837 0.96613 0.87949 1.44333 1.48449 1.39551 1.01204 1.18638 1.10619 1.02528 1.05244 0.94908 1.25902 0.97690 0.98871 1.00434 1.69992 1.34484 1.24096 1.31923 0.85825 0.75488 0.81363 0.79121 1.19483 1.24533 1.18544 1.21501 0.93190 0.96806 0.87544 1.21559 0.94027 0.81141 0.99769 0.89222 1.45776 1.65798 1.14042 1.08206 1.18029 0.77139 0.85551 0.84080 1.90566 1.53171 1.70354 1.31191 1.21939 1.07952 0.95321 0.95311 1.22830 0.91726 0.90851 0.96567 1.67176 1.15359 1.06746 1.33600 1.24046 0.88640 1.00291 0.85598 1.19349 1.03833 0.93540 0.97449 1.21467 0.97006 1.00898 0.90037 1.21416 0.98238 0.94835 0.99526 1.21523 0.95662 0.94717 0.98885 1.21696 1.00556 1.02514 0.91790 1.19199 0.96156 0.93417 0.92789 0.90618 0.92240 0.93203 0.92595 0.88908 0.93144 0.94480 0.93047 0.93476 0.94800 0.76003 0.82360 0.77315 0.80450 0.81664 0.83388 0.84382 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.72 9.05 71.98 0.65 -2.07 16 2 C -0.09 -2.18 2.48 -10.77 -0.03 -2.20 16 3 H 0.10 2.23 8.14 -2.39 -0.02 2.21 16 4 C -0.12 -3.57 5.20 30.67 0.16 -3.41 16 5 C 0.12 4.57 4.20 86.36 0.36 4.93 16 6 N -0.61 -28.35 2.68 -698.24 -1.87 -30.22 16 7 C -0.24 -13.92 10.03 84.03 0.84 -13.08 16 8 H 0.03 2.18 8.06 -2.91 -0.02 2.16 16 9 C -0.03 -2.03 5.23 84.86 0.44 -1.59 16 10 N -0.96 -61.31 13.97 21.65 0.30 -61.00 16 11 Si 0.95 46.60 24.35 68.60 1.67 48.27 16 12 H -0.27 -12.11 6.62 99.48 0.66 -11.46 16 13 H -0.32 -15.94 7.11 99.48 0.71 -15.24 16 14 H -0.26 -12.17 6.64 99.48 0.66 -11.51 16 15 C 0.14 5.52 6.16 86.51 0.53 6.05 16 16 C 0.14 4.53 2.24 45.22 0.10 4.63 16 17 H 0.09 2.83 7.57 -2.39 -0.02 2.81 16 18 N -0.69 -23.05 4.22 -444.73 -1.88 -24.92 16 19 C 0.56 20.88 7.74 86.67 0.67 21.55 16 20 O -0.57 -23.46 13.40 -4.03 -0.05 -23.51 16 21 C -0.20 -6.85 6.07 -18.60 -0.11 -6.97 16 22 C 0.12 3.91 10.71 84.81 0.91 4.82 16 23 N -0.52 -15.01 10.22 -193.73 -1.98 -16.99 16 24 C 0.19 4.12 11.00 85.31 0.94 5.05 16 25 C -0.14 -3.35 5.74 -21.34 -0.12 -3.47 16 26 C -0.07 -1.19 9.82 22.33 0.22 -0.97 16 27 C -0.12 -1.92 9.94 22.06 0.22 -1.70 16 28 C -0.09 -1.90 9.96 22.10 0.22 -1.68 16 29 C -0.15 -4.46 9.32 22.20 0.21 -4.25 16 30 C -0.01 -0.33 5.91 -19.94 -0.12 -0.44 16 31 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 32 H 0.06 1.13 8.14 -2.38 -0.02 1.11 16 33 H 0.05 1.03 7.54 -2.39 -0.02 1.01 16 34 H 0.06 1.68 6.40 -2.39 -0.02 1.67 16 35 H 0.09 2.15 8.14 -2.39 -0.02 2.13 16 36 H 0.05 2.24 4.48 -2.39 -0.01 2.23 16 37 H 0.04 1.40 7.09 -2.39 -0.02 1.39 16 38 H 0.26 15.83 8.31 -92.71 -0.77 15.06 16 39 H 0.05 1.78 8.14 -2.38 -0.02 1.76 16 40 H 0.03 1.58 7.93 -2.39 -0.02 1.57 16 41 H 0.40 12.70 4.74 -92.71 -0.44 12.26 16 42 H 0.16 4.61 6.44 -2.91 -0.02 4.59 16 43 H 0.21 2.50 8.06 -2.91 -0.02 2.48 16 44 H 0.18 1.22 8.06 -2.91 -0.02 1.20 16 45 H 0.17 1.30 8.06 -2.91 -0.02 1.28 16 46 H 0.15 2.39 8.06 -2.91 -0.02 2.37 16 47 H 0.14 4.85 5.24 -2.91 -0.02 4.84 16 Total: -1.00 -78.82 366.75 2.76 -76.07 By element: Atomic # 1 Polarization: 26.64 SS G_CDS: 0.47 Total: 27.11 kcal Atomic # 6 Polarization: -0.89 SS G_CDS: 6.10 Total: 5.21 kcal Atomic # 7 Polarization: -127.71 SS G_CDS: -5.43 Total: -133.14 kcal Atomic # 8 Polarization: -23.46 SS G_CDS: -0.05 Total: -23.51 kcal Atomic # 14 Polarization: 46.60 SS G_CDS: 1.67 Total: 48.27 kcal Total: -78.82 2.76 -76.07 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000968677894.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.562 kcal (2) G-P(sol) polarization free energy of solvation -78.823 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.739 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.758 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.065 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.496 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds