Wall clock time and date at job start Tue Mar 31 2020 22:51:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08990 * 109.47465 * 2 1 4 4 N 1.46502 * 109.46882 * 239.99297 * 2 1 3 5 5 C 1.34779 * 119.99584 * 85.00727 * 4 2 1 6 6 O 1.21577 * 120.00133 * 359.97438 * 5 4 2 7 7 C 1.47643 * 119.99853 * 179.97438 * 5 4 2 8 8 C 1.39721 * 120.07648 * 359.72214 * 7 5 4 9 9 C 1.37718 * 119.91845 * 179.80807 * 8 7 5 10 10 C 1.39058 * 120.07623 * 0.44590 * 9 8 7 11 11 N 1.39803 * 119.91802 * 179.76256 * 10 9 8 12 12 C 1.36638 * 125.67758 * 179.71428 * 11 10 9 13 13 C 1.34811 * 108.19579 * 179.89480 * 12 11 10 14 14 C 1.40988 * 107.48160 * 0.36293 * 13 12 11 15 15 C 1.34811 * 107.48218 * 359.77560 * 14 13 12 16 16 C 1.39055 * 120.15898 * 359.78492 * 10 9 8 17 17 C 1.37702 * 120.08066 * 0.02562 * 16 10 9 18 18 C 1.53000 * 109.46697 * 119.99902 * 2 1 3 19 19 C 1.53497 * 114.20787 * 299.99699 * 18 2 1 20 20 N 1.47062 * 87.98453 * 87.71861 * 19 18 2 21 21 C 1.36943 * 136.05579 * 207.08745 * 20 19 18 22 22 H 1.08002 * 119.99788 * 359.97438 * 21 20 19 23 23 C 1.38811 * 119.99622 * 180.27778 * 21 20 19 24 24 N 1.31614 * 120.00467 * 359.72375 * 23 21 20 25 25 Si 1.86801 * 119.99700 * 179.72266 * 23 21 20 26 26 H 1.48504 * 109.47306 * 359.97438 * 25 23 21 27 27 H 1.48499 * 109.47021 * 119.99661 * 25 23 21 28 28 H 1.48501 * 109.47039 * 240.00078 * 25 23 21 29 29 C 1.47067 * 87.88602 * 27.34481 * 20 19 18 30 30 H 1.09003 * 109.47365 * 300.00460 * 1 2 3 31 31 H 1.09010 * 109.47036 * 60.00007 * 1 2 3 32 32 H 1.08997 * 109.47848 * 180.02562 * 1 2 3 33 33 H 0.96997 * 120.00172 * 265.00348 * 4 2 1 34 34 H 1.07998 * 120.04516 * 0.02562 * 8 7 5 35 35 H 1.07995 * 119.96061 * 180.21269 * 9 8 7 36 36 H 1.08001 * 125.90382 * 359.97438 * 12 11 10 37 37 H 1.08004 * 126.26000 * 180.14476 * 13 12 11 38 38 H 1.08001 * 126.25663 * 179.79151 * 14 13 12 39 39 H 1.08002 * 125.89950 * 180.02562 * 15 14 13 40 40 H 1.07998 * 119.95561 * 179.97438 * 16 10 9 41 41 H 1.08002 * 120.04531 * 179.97438 * 17 16 10 42 42 H 1.09001 * 113.28445 * 166.93217 * 18 2 1 43 43 H 1.09000 * 113.46436 * 332.93489 * 19 18 2 44 44 H 1.08997 * 113.51966 * 202.51274 * 19 18 2 45 45 H 0.96995 * 120.00147 * 180.02562 * 24 23 21 46 46 H 1.08994 * 113.46653 * 87.43736 * 29 20 19 47 47 H 1.08996 * 113.46465 * 217.87717 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0275 0.0000 4 7 2.0182 -0.6908 -1.1961 5 6 2.1470 -0.0184 -2.3571 6 8 1.8576 1.1611 -2.4119 7 6 2.6397 -0.7144 -3.5624 8 6 2.9783 -2.0685 -3.4999 9 6 3.4337 -2.7154 -4.6271 10 6 3.5655 -2.0203 -5.8243 11 7 4.0328 -2.6791 -6.9654 12 6 4.2018 -2.1148 -8.1983 13 6 4.6694 -3.0631 -9.0347 14 6 4.7865 -4.2585 -8.2965 15 6 4.3909 -3.9959 -7.0348 16 6 3.2339 -0.6714 -5.8890 17 6 2.7743 -0.0190 -4.7668 18 6 2.0399 -0.7212 1.2493 19 6 1.5897 -0.0845 2.5714 20 7 0.3766 -0.9126 2.4972 21 6 -0.9105 -0.8194 2.9554 22 1 -1.2182 0.0423 3.5293 23 6 -1.8178 -1.8352 2.6877 24 7 -1.4426 -2.8854 1.9887 25 14 -3.5714 -1.7116 3.3194 26 1 -3.7380 -0.4426 4.0725 27 1 -4.5136 -1.7341 2.1718 28 1 -3.8564 -2.8601 4.2166 29 6 1.1558 -1.8880 1.7197 30 1 -0.3634 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8901 32 1 -0.3635 -1.0276 0.0005 33 1 2.2489 -1.6319 -1.1525 34 1 2.8797 -2.6081 -2.5696 35 1 3.6923 -3.7629 -4.5804 36 1 3.9975 -1.0865 -8.4576 37 1 4.9071 -2.9319 -10.0800 38 1 5.1305 -5.2106 -8.6730 39 1 4.3625 -4.7038 -6.2197 40 1 3.3379 -0.1346 -6.8203 41 1 2.5173 1.0288 -4.8176 42 1 3.1030 -0.9579 1.2064 43 1 1.3912 0.9843 2.4930 44 1 2.2337 -0.3326 3.4151 45 1 -2.0767 -3.5951 1.8014 46 1 1.6858 -2.6121 2.3384 47 1 0.5875 -2.3555 0.9157 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000970079966.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:51:52 Heat of formation + Delta-G solvation = 115.672679 kcal Electronic energy + Delta-G solvation = -28304.521201 eV Core-core repulsion = 24455.769374 eV Total energy + Delta-G solvation = -3848.751828 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -41.95961 -40.20671 -38.99055 -37.96984 -34.53631 -33.54135 -32.23286 -31.65282 -30.19944 -29.16443 -28.68777 -27.68143 -24.74811 -24.57437 -23.80645 -23.27811 -21.74565 -20.80584 -20.25790 -19.91554 -19.15915 -18.63218 -17.35203 -16.79176 -15.99433 -15.37274 -15.33849 -15.10331 -15.03308 -14.88384 -14.66743 -14.24996 -14.15838 -13.80472 -13.78812 -13.43573 -12.85014 -12.74951 -12.64570 -12.62328 -12.37043 -12.24364 -11.79532 -11.43820 -11.22263 -11.08301 -10.99527 -10.79759 -10.57254 -10.34778 -10.14993 -9.93633 -9.78836 -9.70026 -9.46490 -9.20169 -8.77582 -8.71746 -8.60277 -8.30129 -6.85496 -5.80483 -3.11599 0.29733 0.95343 1.96078 2.47344 2.66694 2.91915 3.32782 3.36940 3.43227 3.44893 3.69119 4.24708 4.36027 4.43574 4.62478 4.67920 4.78817 4.86912 4.92618 5.10871 5.22819 5.26162 5.28234 5.34361 5.38170 5.53572 5.57149 5.66776 5.80257 5.90024 5.92922 5.96611 6.02126 6.10112 6.28814 6.32114 6.41313 6.46822 6.55995 6.60740 6.68808 6.77091 6.83700 7.02348 7.07356 7.19996 7.23836 7.47280 7.59098 7.76366 7.94371 8.39188 9.01118 9.67725 10.61117 11.36847 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.018480 B = 0.002176 C = 0.002089 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1514.784535 B =12867.352941 C =13403.313457 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.176 3.824 3 H 0.078 0.922 4 N -0.711 5.711 5 C 0.556 3.444 6 O -0.542 6.542 7 C -0.140 4.140 8 C -0.055 4.055 9 C -0.148 4.148 10 C 0.159 3.841 11 N -0.398 5.398 12 C -0.015 4.015 13 C -0.190 4.190 14 C -0.190 4.190 15 C -0.014 4.014 16 C -0.150 4.150 17 C -0.032 4.032 18 C -0.162 4.162 19 C 0.127 3.873 20 N -0.604 5.604 21 C -0.212 4.212 22 H 0.080 0.920 23 C -0.005 4.005 24 N -0.918 5.918 25 Si 0.908 3.092 26 H -0.280 1.280 27 H -0.290 1.290 28 H -0.292 1.292 29 C 0.157 3.843 30 H 0.086 0.914 31 H 0.028 0.972 32 H 0.077 0.923 33 H 0.397 0.603 34 H 0.139 0.861 35 H 0.136 0.864 36 H 0.166 0.834 37 H 0.141 0.859 38 H 0.141 0.859 39 H 0.167 0.833 40 H 0.135 0.865 41 H 0.146 0.854 42 H 0.069 0.931 43 H 0.042 0.958 44 H 0.035 0.965 45 H 0.252 0.748 46 H 0.023 0.977 47 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.091 -0.817 -18.193 23.026 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.073 3.927 3 H 0.096 0.904 4 N -0.361 5.361 5 C 0.342 3.658 6 O -0.421 6.421 7 C -0.144 4.144 8 C -0.074 4.074 9 C -0.167 4.167 10 C 0.066 3.934 11 N -0.070 5.070 12 C -0.141 4.141 13 C -0.214 4.214 14 C -0.214 4.214 15 C -0.140 4.140 16 C -0.170 4.170 17 C -0.051 4.051 18 C -0.182 4.182 19 C 0.000 4.000 20 N -0.330 5.330 21 C -0.339 4.339 22 H 0.098 0.902 23 C -0.202 4.202 24 N -0.566 5.566 25 Si 0.738 3.262 26 H -0.205 1.205 27 H -0.217 1.217 28 H -0.219 1.219 29 C 0.031 3.969 30 H 0.105 0.895 31 H 0.047 0.953 32 H 0.095 0.905 33 H 0.232 0.768 34 H 0.157 0.843 35 H 0.154 0.846 36 H 0.183 0.817 37 H 0.159 0.841 38 H 0.159 0.841 39 H 0.184 0.816 40 H 0.153 0.847 41 H 0.163 0.837 42 H 0.088 0.912 43 H 0.060 0.940 44 H 0.053 0.947 45 H 0.062 0.938 46 H 0.040 0.960 47 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 13.417 0.066 -17.903 22.373 hybrid contribution -0.776 -0.751 0.482 1.183 sum 12.640 -0.686 -17.421 21.535 Atomic orbital electron populations 1.22171 0.92911 1.04379 1.01110 1.20609 0.95730 0.95179 0.81222 0.90441 1.46105 1.66097 1.13983 1.09901 1.18062 0.78091 0.86579 0.83027 1.90767 1.50784 1.15585 1.84923 1.20148 1.04742 0.94412 0.95083 1.21242 0.94539 0.93298 0.98316 1.20736 1.04222 1.00673 0.91081 1.18073 0.97120 0.92272 0.85937 1.41656 1.48825 1.09181 1.07316 1.21957 1.08382 1.00024 0.83743 1.21029 1.07350 0.93256 0.99782 1.21033 1.07830 0.99279 0.93292 1.21978 1.07253 0.84835 0.99923 1.20765 1.03886 0.92304 1.00030 1.21132 0.93209 1.00637 0.90135 1.23384 0.98365 1.01628 0.94830 1.22339 0.88968 0.95766 0.92954 1.45665 1.04258 1.20024 1.63060 1.18916 0.83135 1.03652 1.28222 0.90200 1.24721 0.98099 0.96524 1.00861 1.69803 1.33958 1.09524 1.43266 0.86110 0.84722 0.77262 0.78082 1.20492 1.21730 1.21875 1.22210 0.89400 0.90668 0.94580 0.89525 0.95341 0.90455 0.76806 0.84322 0.84596 0.81686 0.84124 0.84096 0.81599 0.84687 0.83671 0.91242 0.93991 0.94742 0.93802 0.95952 0.90537 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.04 8.07 37.16 0.30 -2.74 16 2 C 0.18 3.05 2.76 -67.93 -0.19 2.87 16 3 H 0.08 1.40 7.58 -51.93 -0.39 1.00 16 4 N -0.71 -10.51 5.03 -54.82 -0.28 -10.79 16 5 C 0.56 8.51 7.73 -12.42 -0.10 8.42 16 6 O -0.54 -10.12 16.00 5.30 0.08 -10.03 16 7 C -0.14 -1.71 5.88 -104.95 -0.62 -2.32 16 8 C -0.05 -0.54 9.53 -39.22 -0.37 -0.92 16 9 C -0.15 -1.35 9.43 -39.47 -0.37 -1.72 16 10 C 0.16 1.56 6.62 -83.61 -0.55 1.01 16 11 N -0.40 -3.81 2.97 -60.89 -0.18 -3.99 16 12 C -0.01 -0.13 10.73 -16.63 -0.18 -0.31 16 13 C -0.19 -1.60 10.86 -39.76 -0.43 -2.03 16 14 C -0.19 -1.61 10.86 -39.76 -0.43 -2.05 16 15 C -0.01 -0.12 10.73 -16.63 -0.18 -0.30 16 16 C -0.15 -1.42 9.43 -39.47 -0.37 -1.79 16 17 C -0.03 -0.35 9.58 -39.22 -0.38 -0.73 16 18 C -0.16 -2.80 4.24 -89.97 -0.38 -3.18 16 19 C 0.13 2.45 7.85 -8.51 -0.07 2.39 16 20 N -0.60 -14.34 2.18 -184.61 -0.40 -14.74 16 21 C -0.21 -5.61 9.60 -15.06 -0.14 -5.76 16 22 H 0.08 2.08 7.83 -52.49 -0.41 1.67 16 23 C -0.01 -0.15 5.50 -17.43 -0.10 -0.24 16 24 N -0.92 -25.76 11.50 55.49 0.64 -25.13 16 25 Si 0.91 21.67 29.55 -169.99 -5.02 16.64 16 26 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 27 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 28 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 29 C 0.16 3.37 6.41 -8.37 -0.05 3.31 16 30 H 0.09 1.96 5.95 -51.93 -0.31 1.65 16 31 H 0.03 0.57 8.14 -51.92 -0.42 0.15 16 32 H 0.08 1.79 6.33 -51.93 -0.33 1.46 16 33 H 0.40 4.95 6.62 -40.82 -0.27 4.68 16 34 H 0.14 1.13 6.39 -52.49 -0.34 0.79 16 35 H 0.14 0.95 6.68 -52.49 -0.35 0.60 16 36 H 0.17 1.03 6.99 -52.49 -0.37 0.66 16 37 H 0.14 0.90 8.06 -52.48 -0.42 0.48 16 38 H 0.14 0.92 8.06 -52.49 -0.42 0.50 16 39 H 0.17 1.06 6.99 -52.49 -0.37 0.69 16 40 H 0.14 0.97 6.68 -52.49 -0.35 0.62 16 41 H 0.15 1.57 7.64 -52.49 -0.40 1.17 16 42 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 43 H 0.04 0.79 8.12 -51.93 -0.42 0.37 16 44 H 0.04 0.65 8.14 -51.93 -0.42 0.22 16 45 H 0.25 6.94 8.31 -40.82 -0.34 6.60 16 46 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 47 H 0.08 1.79 5.72 -51.93 -0.30 1.49 16 LS Contribution 380.86 15.07 5.74 5.74 Total: -1.00 -31.96 380.86 -10.30 -42.26 By element: Atomic # 1 Polarization: 12.40 SS G_CDS: -6.27 Total: 6.12 kcal Atomic # 6 Polarization: -1.49 SS G_CDS: -4.61 Total: -6.10 kcal Atomic # 7 Polarization: -54.42 SS G_CDS: -0.22 Total: -54.64 kcal Atomic # 8 Polarization: -10.12 SS G_CDS: 0.08 Total: -10.03 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -5.02 Total: 16.64 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -31.96 -10.30 -42.26 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000970079966.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 157.938 kcal (2) G-P(sol) polarization free energy of solvation -31.961 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 125.977 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.304 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.265 kcal (6) G-S(sol) free energy of system = (1) + (5) 115.673 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds