Wall clock time and date at job start Tue Mar 31 2020 22:51:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08990 * 109.47465 * 2 1 4 4 N 1.46502 * 109.46882 * 239.99297 * 2 1 3 5 5 C 1.34779 * 119.99584 * 85.00727 * 4 2 1 6 6 O 1.21577 * 120.00133 * 359.97438 * 5 4 2 7 7 C 1.47643 * 119.99853 * 179.97438 * 5 4 2 8 8 C 1.39721 * 120.07648 * 359.72214 * 7 5 4 9 9 C 1.37718 * 119.91845 * 179.80807 * 8 7 5 10 10 C 1.39058 * 120.07623 * 0.44590 * 9 8 7 11 11 N 1.39803 * 119.91802 * 179.76256 * 10 9 8 12 12 C 1.36638 * 125.67758 * 179.71428 * 11 10 9 13 13 C 1.34811 * 108.19579 * 179.89480 * 12 11 10 14 14 C 1.40988 * 107.48160 * 0.36293 * 13 12 11 15 15 C 1.34811 * 107.48218 * 359.77560 * 14 13 12 16 16 C 1.39055 * 120.15898 * 359.78492 * 10 9 8 17 17 C 1.37702 * 120.08066 * 0.02562 * 16 10 9 18 18 C 1.53000 * 109.46697 * 119.99902 * 2 1 3 19 19 C 1.53497 * 114.20787 * 299.99699 * 18 2 1 20 20 N 1.47062 * 87.98453 * 87.71861 * 19 18 2 21 21 C 1.36943 * 136.05579 * 207.08745 * 20 19 18 22 22 H 1.08002 * 119.99788 * 359.97438 * 21 20 19 23 23 C 1.38811 * 119.99622 * 180.27778 * 21 20 19 24 24 N 1.31614 * 120.00467 * 359.72375 * 23 21 20 25 25 Si 1.86801 * 119.99700 * 179.72266 * 23 21 20 26 26 H 1.48504 * 109.47306 * 359.97438 * 25 23 21 27 27 H 1.48499 * 109.47021 * 119.99661 * 25 23 21 28 28 H 1.48501 * 109.47039 * 240.00078 * 25 23 21 29 29 C 1.47067 * 87.88602 * 27.34481 * 20 19 18 30 30 H 1.09003 * 109.47365 * 300.00460 * 1 2 3 31 31 H 1.09010 * 109.47036 * 60.00007 * 1 2 3 32 32 H 1.08997 * 109.47848 * 180.02562 * 1 2 3 33 33 H 0.96997 * 120.00172 * 265.00348 * 4 2 1 34 34 H 1.07998 * 120.04516 * 0.02562 * 8 7 5 35 35 H 1.07995 * 119.96061 * 180.21269 * 9 8 7 36 36 H 1.08001 * 125.90382 * 359.97438 * 12 11 10 37 37 H 1.08004 * 126.26000 * 180.14476 * 13 12 11 38 38 H 1.08001 * 126.25663 * 179.79151 * 14 13 12 39 39 H 1.08002 * 125.89950 * 180.02562 * 15 14 13 40 40 H 1.07998 * 119.95561 * 179.97438 * 16 10 9 41 41 H 1.08002 * 120.04531 * 179.97438 * 17 16 10 42 42 H 1.09001 * 113.28445 * 166.93217 * 18 2 1 43 43 H 1.09000 * 113.46436 * 332.93489 * 19 18 2 44 44 H 1.08997 * 113.51966 * 202.51274 * 19 18 2 45 45 H 0.96995 * 120.00147 * 180.02562 * 24 23 21 46 46 H 1.08994 * 113.46653 * 87.43736 * 29 20 19 47 47 H 1.08996 * 113.46465 * 217.87717 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0275 0.0000 4 7 2.0182 -0.6908 -1.1961 5 6 2.1470 -0.0184 -2.3571 6 8 1.8576 1.1611 -2.4119 7 6 2.6397 -0.7144 -3.5624 8 6 2.9783 -2.0685 -3.4999 9 6 3.4337 -2.7154 -4.6271 10 6 3.5655 -2.0203 -5.8243 11 7 4.0328 -2.6791 -6.9654 12 6 4.2018 -2.1148 -8.1983 13 6 4.6694 -3.0631 -9.0347 14 6 4.7865 -4.2585 -8.2965 15 6 4.3909 -3.9959 -7.0348 16 6 3.2339 -0.6714 -5.8890 17 6 2.7743 -0.0190 -4.7668 18 6 2.0399 -0.7212 1.2493 19 6 1.5897 -0.0845 2.5714 20 7 0.3766 -0.9126 2.4972 21 6 -0.9105 -0.8194 2.9554 22 1 -1.2182 0.0423 3.5293 23 6 -1.8178 -1.8352 2.6877 24 7 -1.4426 -2.8854 1.9887 25 14 -3.5714 -1.7116 3.3194 26 1 -3.7380 -0.4426 4.0725 27 1 -4.5136 -1.7341 2.1718 28 1 -3.8564 -2.8601 4.2166 29 6 1.1558 -1.8880 1.7197 30 1 -0.3634 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8901 32 1 -0.3635 -1.0276 0.0005 33 1 2.2489 -1.6319 -1.1525 34 1 2.8797 -2.6081 -2.5696 35 1 3.6923 -3.7629 -4.5804 36 1 3.9975 -1.0865 -8.4576 37 1 4.9071 -2.9319 -10.0800 38 1 5.1305 -5.2106 -8.6730 39 1 4.3625 -4.7038 -6.2197 40 1 3.3379 -0.1346 -6.8203 41 1 2.5173 1.0288 -4.8176 42 1 3.1030 -0.9579 1.2064 43 1 1.3912 0.9843 2.4930 44 1 2.2337 -0.3326 3.4151 45 1 -2.0767 -3.5951 1.8014 46 1 1.6858 -2.6121 2.3384 47 1 0.5875 -2.3555 0.9157 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000970079966.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:51:51 Heat of formation + Delta-G solvation = 99.465911 kcal Electronic energy + Delta-G solvation = -28305.223980 eV Core-core repulsion = 24455.769374 eV Total energy + Delta-G solvation = -3849.454606 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -42.61040 -41.40778 -40.30648 -39.07463 -35.94766 -34.38721 -34.07423 -32.46763 -31.44683 -29.82655 -29.75031 -29.44109 -26.40377 -26.04683 -24.98770 -24.06509 -23.17504 -21.85561 -20.93053 -20.82733 -20.34615 -19.55720 -18.76490 -18.36960 -17.23255 -16.84794 -16.52622 -16.18295 -16.00866 -15.91726 -15.84379 -15.61568 -15.28992 -14.87512 -14.62464 -14.46660 -14.31670 -13.97045 -13.63384 -13.49431 -13.43081 -13.21149 -12.98732 -12.95062 -12.92092 -12.77301 -12.54023 -12.35562 -12.17745 -12.01500 -11.69616 -11.47776 -11.13475 -10.90563 -10.83945 -10.73064 -10.20823 -10.06422 -9.22090 -9.04439 -8.76490 -7.84757 -5.14092 -0.51780 0.21251 1.21334 1.45439 1.47340 1.55224 1.81567 1.95890 2.05651 2.14074 2.50096 2.79109 3.37587 3.54104 3.55744 3.65639 3.69766 3.76080 3.94526 4.01689 4.10269 4.18636 4.28555 4.39817 4.45768 4.56135 4.59598 4.72105 4.74488 4.85695 4.87162 4.89900 4.98494 5.03603 5.05012 5.11631 5.14373 5.23819 5.30847 5.31834 5.35956 5.50612 5.57412 5.60026 5.67848 5.80301 5.95653 6.01611 6.20920 6.42768 6.57504 6.99253 7.21098 7.67613 8.68514 9.32203 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.018480 B = 0.002176 C = 0.002089 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1514.784535 B =12867.352941 C =13403.313457 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.185 3.815 3 H 0.078 0.922 4 N -0.704 5.704 5 C 0.556 3.444 6 O -0.582 6.582 7 C -0.161 4.161 8 C -0.049 4.049 9 C -0.147 4.147 10 C 0.159 3.841 11 N -0.407 5.407 12 C -0.030 4.030 13 C -0.200 4.200 14 C -0.201 4.201 15 C -0.028 4.028 16 C -0.149 4.149 17 C -0.038 4.038 18 C -0.129 4.129 19 C 0.124 3.876 20 N -0.631 5.631 21 C -0.211 4.211 22 H 0.078 0.922 23 C -0.059 4.059 24 N -0.943 5.943 25 Si 0.962 3.038 26 H -0.270 1.270 27 H -0.297 1.297 28 H -0.296 1.296 29 C 0.156 3.844 30 H 0.063 0.937 31 H 0.020 0.980 32 H 0.048 0.952 33 H 0.410 0.590 34 H 0.156 0.844 35 H 0.160 0.840 36 H 0.184 0.816 37 H 0.157 0.843 38 H 0.157 0.843 39 H 0.186 0.814 40 H 0.156 0.844 41 H 0.140 0.860 42 H 0.110 0.890 43 H 0.048 0.952 44 H 0.053 0.947 45 H 0.245 0.755 46 H 0.019 0.981 47 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.862 -1.277 -19.152 24.900 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.081 3.919 3 H 0.096 0.904 4 N -0.354 5.354 5 C 0.345 3.655 6 O -0.463 6.463 7 C -0.165 4.165 8 C -0.068 4.068 9 C -0.167 4.167 10 C 0.065 3.935 11 N -0.079 5.079 12 C -0.155 4.155 13 C -0.224 4.224 14 C -0.225 4.225 15 C -0.153 4.153 16 C -0.168 4.168 17 C -0.057 4.057 18 C -0.149 4.149 19 C -0.002 4.002 20 N -0.357 5.357 21 C -0.340 4.340 22 H 0.095 0.905 23 C -0.252 4.252 24 N -0.592 5.592 25 Si 0.792 3.208 26 H -0.194 1.194 27 H -0.224 1.224 28 H -0.223 1.223 29 C 0.031 3.969 30 H 0.082 0.918 31 H 0.039 0.961 32 H 0.067 0.933 33 H 0.247 0.753 34 H 0.173 0.827 35 H 0.177 0.823 36 H 0.201 0.799 37 H 0.174 0.826 38 H 0.174 0.826 39 H 0.203 0.797 40 H 0.174 0.826 41 H 0.158 0.842 42 H 0.128 0.872 43 H 0.066 0.934 44 H 0.071 0.929 45 H 0.054 0.946 46 H 0.037 0.963 47 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 15.228 -0.402 -18.867 24.249 hybrid contribution -1.257 -0.612 0.674 1.552 sum 13.971 -1.014 -18.193 22.961 Atomic orbital electron populations 1.21932 0.95529 1.01864 0.99529 1.20325 0.93378 0.95661 0.82533 0.90416 1.45917 1.65823 1.14555 1.09150 1.18526 0.77087 0.86167 0.83696 1.90740 1.52613 1.17400 1.85559 1.19952 1.07053 0.95443 0.94038 1.21390 0.93701 0.92320 0.99396 1.20994 1.03483 1.01756 0.90445 1.18278 0.96373 0.92468 0.86390 1.41790 1.49178 1.09578 1.07390 1.22409 1.08391 1.01134 0.83593 1.21376 1.07035 0.93301 1.00686 1.21381 1.07631 1.00059 0.93437 1.22434 1.07131 0.84927 1.00812 1.20921 1.03203 0.92445 1.00266 1.21159 0.93558 1.00596 0.90411 1.23134 0.99696 0.98484 0.93560 1.22542 0.87385 0.95743 0.94545 1.45925 1.04699 1.21761 1.63345 1.19143 0.84793 1.03119 1.26918 0.90468 1.25349 1.01124 0.96800 1.01938 1.69946 1.34471 1.10023 1.44794 0.85243 0.81097 0.77260 0.77186 1.19444 1.22436 1.22293 1.22183 0.89597 0.91466 0.93682 0.91823 0.96092 0.93264 0.75276 0.82661 0.82265 0.79859 0.82574 0.82575 0.79663 0.82644 0.84175 0.87211 0.93417 0.92921 0.94597 0.96337 0.92940 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.47 8.07 71.98 0.58 -4.89 16 2 C 0.19 6.28 2.76 44.99 0.12 6.40 16 3 H 0.08 2.72 7.58 -2.39 -0.02 2.70 16 4 N -0.70 -20.06 5.03 -445.61 -2.24 -22.30 16 5 C 0.56 16.78 7.73 86.73 0.67 17.45 16 6 O -0.58 -21.88 16.00 -3.96 -0.06 -21.95 16 7 C -0.16 -3.77 5.88 -20.08 -0.12 -3.89 16 8 C -0.05 -0.88 9.53 22.51 0.21 -0.66 16 9 C -0.15 -2.34 9.43 22.34 0.21 -2.12 16 10 C 0.16 2.78 6.62 38.26 0.25 3.03 16 11 N -0.41 -6.89 2.97 -346.57 -1.03 -7.92 16 12 C -0.03 -0.46 10.73 83.16 0.89 0.43 16 13 C -0.20 -2.98 10.86 22.16 0.24 -2.74 16 14 C -0.20 -3.00 10.86 22.16 0.24 -2.76 16 15 C -0.03 -0.42 10.73 83.16 0.89 0.47 16 16 C -0.15 -2.57 9.43 22.34 0.21 -2.36 16 17 C -0.04 -0.80 9.58 22.50 0.22 -0.59 16 18 C -0.13 -4.20 4.24 -10.37 -0.04 -4.24 16 19 C 0.12 4.57 7.85 83.18 0.65 5.23 16 20 N -0.63 -29.87 2.18 -737.98 -1.61 -31.48 16 21 C -0.21 -11.29 9.60 84.03 0.81 -10.48 16 22 H 0.08 4.05 7.83 -2.91 -0.02 4.03 16 23 C -0.06 -3.22 5.50 84.86 0.47 -2.75 16 24 N -0.94 -54.07 11.50 21.65 0.25 -53.82 16 25 Si 0.96 45.27 29.55 68.60 2.03 47.30 16 26 H -0.27 -12.09 7.11 99.48 0.71 -11.38 16 27 H -0.30 -14.16 7.11 99.48 0.71 -13.45 16 28 H -0.30 -13.98 7.11 99.48 0.71 -13.27 16 29 C 0.16 6.61 6.41 83.27 0.53 7.15 16 30 H 0.06 2.94 5.95 -2.39 -0.01 2.92 16 31 H 0.02 0.86 8.14 -2.38 -0.02 0.84 16 32 H 0.05 2.34 6.33 -2.39 -0.02 2.33 16 33 H 0.41 9.52 6.62 -92.71 -0.61 8.91 16 34 H 0.16 2.15 6.39 -2.91 -0.02 2.13 16 35 H 0.16 1.72 6.68 -2.91 -0.02 1.70 16 36 H 0.18 1.88 6.99 -2.91 -0.02 1.86 16 37 H 0.16 1.69 8.06 -2.91 -0.02 1.66 16 38 H 0.16 1.70 8.06 -2.91 -0.02 1.68 16 39 H 0.19 1.85 6.99 -2.91 -0.02 1.83 16 40 H 0.16 1.92 6.68 -2.91 -0.02 1.90 16 41 H 0.14 3.06 7.64 -2.91 -0.02 3.03 16 42 H 0.11 2.81 8.14 -2.39 -0.02 2.79 16 43 H 0.05 1.71 8.12 -2.39 -0.02 1.69 16 44 H 0.05 1.81 8.14 -2.39 -0.02 1.79 16 45 H 0.24 13.84 8.31 -92.71 -0.77 13.07 16 46 H 0.02 0.81 8.14 -2.39 -0.02 0.79 16 47 H 0.05 2.49 5.72 -2.39 -0.01 2.47 16 Total: -1.00 -70.22 380.86 4.77 -65.45 By element: Atomic # 1 Polarization: 21.64 SS G_CDS: 0.39 Total: 22.03 kcal Atomic # 6 Polarization: -4.36 SS G_CDS: 7.04 Total: 2.68 kcal Atomic # 7 Polarization: -110.89 SS G_CDS: -4.63 Total: -115.52 kcal Atomic # 8 Polarization: -21.88 SS G_CDS: -0.06 Total: -21.95 kcal Atomic # 14 Polarization: 45.27 SS G_CDS: 2.03 Total: 47.30 kcal Total: -70.22 4.77 -65.45 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000970079966.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 164.921 kcal (2) G-P(sol) polarization free energy of solvation -70.220 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 94.700 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.765 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.455 kcal (6) G-S(sol) free energy of system = (1) + (5) 99.466 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds