Wall clock time and date at job start Tue Mar 31 2020 22:51:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09003 * 109.47515 * 2 1 4 4 N 1.46500 * 109.47087 * 120.00308 * 2 1 3 5 5 C 1.34783 * 119.99869 * 274.99848 * 4 2 1 6 6 O 1.21578 * 119.99635 * 359.97438 * 5 4 2 7 7 C 1.47640 * 119.99830 * 180.02562 * 5 4 2 8 8 C 1.39715 * 120.08267 * 359.71989 * 7 5 4 9 9 C 1.37705 * 119.92229 * 179.74536 * 8 7 5 10 10 C 1.39054 * 120.08055 * 0.53384 * 9 8 7 11 11 N 1.39797 * 119.92534 * 179.70052 * 10 9 8 12 12 C 1.36643 * 125.68261 * 179.71431 * 11 10 9 13 13 C 1.34801 * 108.19608 * 179.82880 * 12 11 10 14 14 C 1.40986 * 107.48526 * 0.42584 * 13 12 11 15 15 C 1.34812 * 107.47903 * 359.73395 * 14 13 12 16 16 C 1.39064 * 120.15417 * 359.71769 * 10 9 8 17 17 C 1.37702 * 120.08096 * 0.02884 * 16 10 9 18 18 C 1.53003 * 109.46711 * 240.00085 * 2 1 3 19 19 C 1.53486 * 114.20850 * 60.00280 * 18 2 1 20 20 N 1.47064 * 87.98715 * 87.51930 * 19 18 2 21 21 C 1.36944 * 136.05968 * 207.08932 * 20 19 18 22 22 H 1.07995 * 119.99517 * 7.55331 * 21 20 19 23 23 C 1.38804 * 120.00270 * 187.55676 * 21 20 19 24 24 N 1.31616 * 120.00491 * 174.37770 * 23 21 20 25 25 Si 1.86810 * 119.99801 * 354.37977 * 23 21 20 26 26 H 1.48499 * 109.46858 * 174.95062 * 25 23 21 27 27 H 1.48498 * 109.46907 * 294.94544 * 25 23 21 28 28 H 1.48495 * 109.47036 * 54.94600 * 25 23 21 29 29 C 1.47066 * 87.88390 * 27.34185 * 20 19 18 30 30 H 1.08994 * 109.47561 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.46986 * 300.00218 * 1 2 3 32 32 H 1.09004 * 109.47074 * 59.99832 * 1 2 3 33 33 H 0.96997 * 120.00381 * 94.99496 * 4 2 1 34 34 H 1.08007 * 120.03635 * 359.97438 * 8 7 5 35 35 H 1.08004 * 119.96299 * 180.25694 * 9 8 7 36 36 H 1.08005 * 125.89745 * 0.02562 * 12 11 10 37 37 H 1.08006 * 126.25494 * 180.16022 * 13 12 11 38 38 H 1.08000 * 126.25761 * 179.72913 * 14 13 12 39 39 H 1.07996 * 125.89911 * 179.97438 * 15 14 13 40 40 H 1.08007 * 119.95705 * 179.97438 * 16 10 9 41 41 H 1.08005 * 120.04085 * 179.97438 * 17 16 10 42 42 H 1.08998 * 113.41116 * 286.79710 * 18 2 1 43 43 H 1.09003 * 113.46770 * 332.73878 * 19 18 2 44 44 H 1.09002 * 113.52590 * 202.30733 * 19 18 2 45 45 H 0.97003 * 119.99848 * 354.81683 * 24 23 21 46 46 H 1.08996 * 113.46631 * 87.44126 * 29 20 19 47 47 H 1.09001 * 113.46561 * 217.88042 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0183 -0.6907 1.1961 5 6 2.1471 -0.0183 2.3572 6 8 1.8584 1.1614 2.4116 7 6 2.6397 -0.7142 3.5625 8 6 2.9674 -2.0711 3.5029 9 6 3.4316 -2.7157 4.6278 10 6 3.5638 -2.0204 5.8248 11 7 4.0295 -2.6795 6.9663 12 6 4.2091 -2.1125 8.1965 13 6 4.6651 -3.0637 9.0359 14 6 4.7811 -4.2595 8.2981 15 6 4.3862 -3.9966 7.0362 16 6 3.2336 -0.6711 5.8891 17 6 2.7738 -0.0188 4.7669 18 6 2.0399 -0.7213 -1.2493 19 6 1.5898 -0.0846 -2.5714 20 7 2.7723 0.7864 -2.4946 21 6 3.1105 2.0324 -2.9511 22 1 2.3637 2.6574 -3.4179 23 6 4.4131 2.4918 -2.8140 24 7 4.7655 3.6412 -3.3498 25 14 5.6662 1.4788 -1.8688 26 1 7.0008 2.1220 -1.9706 27 1 5.2629 1.3987 -0.4418 28 1 5.7308 0.1107 -2.4425 29 6 3.4340 -0.2723 -1.7172 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5139 0.8900 32 1 -0.3633 0.5139 -0.8900 33 1 2.2490 -1.6318 1.1526 34 1 2.8603 -2.6129 2.5748 35 1 3.6891 -3.7635 4.5815 36 1 4.0159 -1.0813 8.4528 37 1 4.9025 -2.9325 10.0813 38 1 5.1239 -5.2118 8.6750 39 1 4.3573 -4.7047 6.2213 40 1 3.3372 -0.1343 6.8206 41 1 2.5171 1.0290 4.8177 42 1 1.9117 -1.8029 -1.2076 43 1 0.6466 0.4562 -2.4938 44 1 1.6122 -0.7735 -3.4159 45 1 4.1374 4.1310 -3.9035 46 1 3.9431 -1.0113 -2.3358 47 1 4.0620 0.1087 -0.9119 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000970079967.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:51:56 Heat of formation + Delta-G solvation = 113.925565 kcal Electronic energy + Delta-G solvation = -28360.182354 eV Core-core repulsion = 24511.354766 eV Total energy + Delta-G solvation = -3848.827588 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -42.01841 -40.32523 -39.10965 -38.09942 -34.91944 -33.64218 -32.41768 -31.77272 -30.71778 -29.22284 -29.03968 -27.82479 -25.51267 -24.50245 -23.60183 -23.26825 -21.66535 -20.95597 -20.31483 -20.08714 -19.35777 -18.88010 -17.67366 -17.31088 -16.47219 -15.58572 -15.41324 -15.30745 -15.25536 -14.88817 -14.74506 -14.29438 -14.15751 -13.87821 -13.80374 -13.48120 -13.23210 -13.18226 -12.84635 -12.81253 -12.68965 -12.39645 -12.22122 -12.01188 -11.52392 -11.48845 -11.28316 -10.99018 -10.62205 -10.31161 -10.24324 -10.21083 -9.85204 -9.54161 -9.21763 -9.11636 -8.95976 -8.85465 -8.65380 -8.37911 -7.14538 -6.26219 -3.20437 0.22169 0.87590 1.89718 2.41368 2.61918 2.83418 3.14552 3.41036 3.46253 3.60203 3.65685 4.16319 4.28546 4.52593 4.59159 4.61989 4.70694 4.74810 4.78716 4.83468 4.93231 5.02157 5.07857 5.18064 5.30046 5.46128 5.48587 5.58342 5.60206 5.65601 5.72938 5.82576 5.84831 5.90652 5.90961 5.96273 6.04453 6.18662 6.24267 6.25484 6.29234 6.41394 6.49129 6.50906 6.61748 6.78195 6.88203 7.01556 7.13541 7.56136 8.26439 8.27190 9.00427 9.52848 10.38624 11.23695 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.016433 B = 0.002460 C = 0.002340 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1703.528883 B =11381.063581 C =11963.276469 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.166 3.834 3 H 0.104 0.896 4 N -0.717 5.717 5 C 0.556 3.444 6 O -0.529 6.529 7 C -0.141 4.141 8 C -0.056 4.056 9 C -0.149 4.149 10 C 0.161 3.839 11 N -0.399 5.399 12 C -0.014 4.014 13 C -0.190 4.190 14 C -0.190 4.190 15 C -0.015 4.015 16 C -0.149 4.149 17 C -0.030 4.030 18 C -0.142 4.142 19 C 0.130 3.870 20 N -0.626 5.626 21 C -0.302 4.302 22 H 0.083 0.917 23 C -0.024 4.024 24 N -0.935 5.935 25 Si 1.068 2.932 26 H -0.296 1.296 27 H -0.293 1.293 28 H -0.288 1.288 29 C 0.099 3.901 30 H 0.052 0.948 31 H 0.056 0.944 32 H 0.071 0.929 33 H 0.395 0.605 34 H 0.137 0.863 35 H 0.136 0.864 36 H 0.166 0.834 37 H 0.142 0.858 38 H 0.141 0.859 39 H 0.166 0.834 40 H 0.137 0.863 41 H 0.147 0.853 42 H 0.077 0.923 43 H 0.050 0.950 44 H 0.040 0.960 45 H 0.261 0.739 46 H 0.045 0.955 47 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.793 -18.782 21.589 29.014 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.062 3.938 3 H 0.122 0.878 4 N -0.368 5.368 5 C 0.342 3.658 6 O -0.406 6.406 7 C -0.145 4.145 8 C -0.075 4.075 9 C -0.168 4.168 10 C 0.068 3.932 11 N -0.071 5.071 12 C -0.140 4.140 13 C -0.214 4.214 14 C -0.213 4.213 15 C -0.141 4.141 16 C -0.168 4.168 17 C -0.049 4.049 18 C -0.162 4.162 19 C 0.003 3.997 20 N -0.355 5.355 21 C -0.428 4.428 22 H 0.101 0.899 23 C -0.223 4.223 24 N -0.577 5.577 25 Si 0.901 3.099 26 H -0.223 1.223 27 H -0.221 1.221 28 H -0.215 1.215 29 C -0.026 4.026 30 H 0.071 0.929 31 H 0.075 0.925 32 H 0.089 0.911 33 H 0.229 0.771 34 H 0.155 0.845 35 H 0.154 0.846 36 H 0.184 0.816 37 H 0.159 0.841 38 H 0.159 0.841 39 H 0.183 0.817 40 H 0.154 0.846 41 H 0.165 0.835 42 H 0.095 0.905 43 H 0.068 0.932 44 H 0.058 0.942 45 H 0.071 0.929 46 H 0.063 0.937 47 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -3.478 -17.522 21.830 28.208 hybrid contribution -1.340 -0.638 -0.713 1.646 sum -4.818 -18.160 21.117 28.265 Atomic orbital electron populations 1.22109 0.95273 1.01474 1.02625 1.20686 0.93492 0.98231 0.81375 0.87759 1.46014 1.67161 1.13752 1.09844 1.18092 0.78058 0.86592 0.83020 1.90819 1.49780 1.15195 1.84829 1.20111 1.05085 0.94330 0.94940 1.21172 0.94988 0.93278 0.98106 1.20709 1.04270 1.00707 0.91139 1.18073 0.96957 0.92268 0.85934 1.41655 1.48893 1.09069 1.07432 1.21975 1.08342 0.99929 0.83759 1.21038 1.07371 0.93164 0.99792 1.21039 1.07704 0.99334 0.93269 1.21955 1.07371 0.84877 0.99883 1.20794 1.03655 0.92269 1.00131 1.21168 0.92958 1.00707 0.90060 1.23210 0.99535 0.98204 0.95265 1.22356 0.92753 0.91900 0.92641 1.46026 1.13197 1.12619 1.63682 1.20134 0.96378 0.88585 1.37715 0.89947 1.25667 0.96089 0.99167 1.01383 1.70908 1.37599 1.15083 1.34100 0.83740 0.75978 0.74513 0.75630 1.22288 1.22094 1.21541 1.22823 0.94024 0.91287 0.94485 0.92904 0.92450 0.91065 0.77063 0.84537 0.84619 0.81627 0.84067 0.84073 0.81650 0.84555 0.83517 0.90479 0.93205 0.94225 0.92946 0.93706 0.92925 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.17 9.29 37.16 0.35 -1.82 16 2 C 0.17 2.67 2.43 -67.93 -0.16 2.50 16 3 H 0.10 2.22 7.36 -51.93 -0.38 1.84 16 4 N -0.72 -9.61 5.03 -54.81 -0.28 -9.88 16 5 C 0.56 8.36 7.73 -12.42 -0.10 8.26 16 6 O -0.53 -10.19 16.00 5.30 0.08 -10.11 16 7 C -0.14 -1.65 5.88 -104.95 -0.62 -2.27 16 8 C -0.06 -0.50 9.53 -39.22 -0.37 -0.87 16 9 C -0.15 -1.22 9.43 -39.47 -0.37 -1.60 16 10 C 0.16 1.50 6.62 -83.62 -0.55 0.95 16 11 N -0.40 -3.63 2.97 -60.90 -0.18 -3.81 16 12 C -0.01 -0.12 10.73 -16.63 -0.18 -0.30 16 13 C -0.19 -1.54 10.86 -39.76 -0.43 -1.97 16 14 C -0.19 -1.52 10.86 -39.76 -0.43 -1.95 16 15 C -0.01 -0.12 10.73 -16.63 -0.18 -0.30 16 16 C -0.15 -1.38 9.43 -39.47 -0.37 -1.75 16 17 C -0.03 -0.32 9.58 -39.22 -0.38 -0.70 16 18 C -0.14 -2.26 3.73 -89.97 -0.34 -2.60 16 19 C 0.13 2.44 8.08 -8.52 -0.07 2.37 16 20 N -0.63 -15.24 3.49 -184.63 -0.64 -15.89 16 21 C -0.30 -8.79 11.08 -15.06 -0.17 -8.96 16 22 H 0.08 2.53 8.06 -52.49 -0.42 2.10 16 23 C -0.02 -0.74 5.50 -17.43 -0.10 -0.83 16 24 N -0.93 -30.14 13.70 55.49 0.76 -29.38 16 25 Si 1.07 27.58 25.16 -169.99 -4.28 23.31 16 26 H -0.30 -7.77 7.11 56.52 0.40 -7.36 16 27 H -0.29 -7.34 6.51 56.52 0.37 -6.97 16 28 H -0.29 -6.84 6.20 56.52 0.35 -6.49 16 29 C 0.10 2.04 5.24 -8.38 -0.04 2.00 16 30 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 32 H 0.07 1.01 6.50 -51.93 -0.34 0.67 16 33 H 0.39 3.85 6.62 -40.82 -0.27 3.58 16 34 H 0.14 0.85 6.39 -52.48 -0.34 0.51 16 35 H 0.14 0.80 6.68 -52.48 -0.35 0.45 16 36 H 0.17 1.00 6.99 -52.48 -0.37 0.64 16 37 H 0.14 0.87 8.06 -52.48 -0.42 0.45 16 38 H 0.14 0.85 8.06 -52.49 -0.42 0.43 16 39 H 0.17 0.92 6.99 -52.49 -0.37 0.56 16 40 H 0.14 0.97 6.68 -52.48 -0.35 0.62 16 41 H 0.15 1.63 7.64 -52.48 -0.40 1.23 16 42 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 43 H 0.05 0.90 6.43 -51.93 -0.33 0.57 16 44 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 45 H 0.26 8.28 8.73 -40.82 -0.36 7.92 16 46 H 0.05 0.89 7.66 -51.93 -0.40 0.50 16 47 H 0.05 1.16 4.71 -51.93 -0.24 0.92 16 LS Contribution 379.00 15.07 5.71 5.71 Total: -1.00 -36.67 379.00 -9.67 -46.33 By element: Atomic # 1 Polarization: 9.88 SS G_CDS: -6.33 Total: 3.55 kcal Atomic # 6 Polarization: -5.32 SS G_CDS: -4.51 Total: -9.83 kcal Atomic # 7 Polarization: -58.62 SS G_CDS: -0.34 Total: -58.96 kcal Atomic # 8 Polarization: -10.19 SS G_CDS: 0.08 Total: -10.11 kcal Atomic # 14 Polarization: 27.58 SS G_CDS: -4.28 Total: 23.31 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -36.67 -9.67 -46.33 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000970079967.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 160.259 kcal (2) G-P(sol) polarization free energy of solvation -36.666 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 123.592 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.667 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.333 kcal (6) G-S(sol) free energy of system = (1) + (5) 113.926 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds