Wall clock time and date at job start Tue Mar 31 2020 22:51:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09003 * 109.47515 * 2 1 4 4 N 1.46500 * 109.47087 * 120.00308 * 2 1 3 5 5 C 1.34783 * 119.99869 * 274.99848 * 4 2 1 6 6 O 1.21578 * 119.99635 * 359.97438 * 5 4 2 7 7 C 1.47640 * 119.99830 * 180.02562 * 5 4 2 8 8 C 1.39715 * 120.08267 * 359.71989 * 7 5 4 9 9 C 1.37705 * 119.92229 * 179.74536 * 8 7 5 10 10 C 1.39054 * 120.08055 * 0.53384 * 9 8 7 11 11 N 1.39797 * 119.92534 * 179.70052 * 10 9 8 12 12 C 1.36643 * 125.68261 * 179.71431 * 11 10 9 13 13 C 1.34801 * 108.19608 * 179.82880 * 12 11 10 14 14 C 1.40986 * 107.48526 * 0.42584 * 13 12 11 15 15 C 1.34812 * 107.47903 * 359.73395 * 14 13 12 16 16 C 1.39064 * 120.15417 * 359.71769 * 10 9 8 17 17 C 1.37702 * 120.08096 * 0.02884 * 16 10 9 18 18 C 1.53003 * 109.46711 * 240.00085 * 2 1 3 19 19 C 1.53486 * 114.20850 * 60.00280 * 18 2 1 20 20 N 1.47064 * 87.98715 * 87.51930 * 19 18 2 21 21 C 1.36944 * 136.05968 * 207.08932 * 20 19 18 22 22 H 1.07995 * 119.99517 * 7.55331 * 21 20 19 23 23 C 1.38804 * 120.00270 * 187.55676 * 21 20 19 24 24 N 1.31616 * 120.00491 * 174.37770 * 23 21 20 25 25 Si 1.86810 * 119.99801 * 354.37977 * 23 21 20 26 26 H 1.48499 * 109.46858 * 174.95062 * 25 23 21 27 27 H 1.48498 * 109.46907 * 294.94544 * 25 23 21 28 28 H 1.48495 * 109.47036 * 54.94600 * 25 23 21 29 29 C 1.47066 * 87.88390 * 27.34185 * 20 19 18 30 30 H 1.08994 * 109.47561 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.46986 * 300.00218 * 1 2 3 32 32 H 1.09004 * 109.47074 * 59.99832 * 1 2 3 33 33 H 0.96997 * 120.00381 * 94.99496 * 4 2 1 34 34 H 1.08007 * 120.03635 * 359.97438 * 8 7 5 35 35 H 1.08004 * 119.96299 * 180.25694 * 9 8 7 36 36 H 1.08005 * 125.89745 * 0.02562 * 12 11 10 37 37 H 1.08006 * 126.25494 * 180.16022 * 13 12 11 38 38 H 1.08000 * 126.25761 * 179.72913 * 14 13 12 39 39 H 1.07996 * 125.89911 * 179.97438 * 15 14 13 40 40 H 1.08007 * 119.95705 * 179.97438 * 16 10 9 41 41 H 1.08005 * 120.04085 * 179.97438 * 17 16 10 42 42 H 1.08998 * 113.41116 * 286.79710 * 18 2 1 43 43 H 1.09003 * 113.46770 * 332.73878 * 19 18 2 44 44 H 1.09002 * 113.52590 * 202.30733 * 19 18 2 45 45 H 0.97003 * 119.99848 * 354.81683 * 24 23 21 46 46 H 1.08996 * 113.46631 * 87.44126 * 29 20 19 47 47 H 1.09001 * 113.46561 * 217.88042 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0183 -0.6907 1.1961 5 6 2.1471 -0.0183 2.3572 6 8 1.8584 1.1614 2.4116 7 6 2.6397 -0.7142 3.5625 8 6 2.9674 -2.0711 3.5029 9 6 3.4316 -2.7157 4.6278 10 6 3.5638 -2.0204 5.8248 11 7 4.0295 -2.6795 6.9663 12 6 4.2091 -2.1125 8.1965 13 6 4.6651 -3.0637 9.0359 14 6 4.7811 -4.2595 8.2981 15 6 4.3862 -3.9966 7.0362 16 6 3.2336 -0.6711 5.8891 17 6 2.7738 -0.0188 4.7669 18 6 2.0399 -0.7213 -1.2493 19 6 1.5898 -0.0846 -2.5714 20 7 2.7723 0.7864 -2.4946 21 6 3.1105 2.0324 -2.9511 22 1 2.3637 2.6574 -3.4179 23 6 4.4131 2.4918 -2.8140 24 7 4.7655 3.6412 -3.3498 25 14 5.6662 1.4788 -1.8688 26 1 7.0008 2.1220 -1.9706 27 1 5.2629 1.3987 -0.4418 28 1 5.7308 0.1107 -2.4425 29 6 3.4340 -0.2723 -1.7172 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5139 0.8900 32 1 -0.3633 0.5139 -0.8900 33 1 2.2490 -1.6318 1.1526 34 1 2.8603 -2.6129 2.5748 35 1 3.6891 -3.7635 4.5815 36 1 4.0159 -1.0813 8.4528 37 1 4.9025 -2.9325 10.0813 38 1 5.1239 -5.2118 8.6750 39 1 4.3573 -4.7047 6.2213 40 1 3.3372 -0.1343 6.8206 41 1 2.5171 1.0290 4.8177 42 1 1.9117 -1.8029 -1.2076 43 1 0.6466 0.4562 -2.4938 44 1 1.6122 -0.7735 -3.4159 45 1 4.1374 4.1310 -3.9035 46 1 3.9431 -1.0113 -2.3358 47 1 4.0620 0.1087 -0.9119 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000970079967.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:51:55 Heat of formation + Delta-G solvation = 89.883458 kcal Electronic energy + Delta-G solvation = -28361.224898 eV Core-core repulsion = 24511.354766 eV Total energy + Delta-G solvation = -3849.870132 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -42.62139 -41.44823 -40.37225 -39.13859 -36.27677 -34.62060 -34.28084 -32.58233 -31.84558 -29.97877 -29.78533 -29.52095 -27.04081 -25.63900 -24.80990 -24.06946 -23.14348 -21.95731 -21.03162 -20.90255 -20.65251 -19.72601 -19.42319 -18.55101 -17.70300 -17.04977 -16.53852 -16.14782 -15.99145 -15.92406 -15.80081 -15.77929 -15.29670 -15.12244 -14.87265 -14.62386 -14.56286 -14.31155 -13.78027 -13.62143 -13.48330 -13.35412 -13.22076 -13.13404 -12.96057 -12.83583 -12.70204 -12.24972 -12.18708 -12.06166 -11.69427 -11.32489 -11.09013 -11.04806 -10.92442 -10.85899 -10.22530 -10.16284 -9.22713 -9.19722 -9.05786 -8.61720 -5.46065 -0.53887 0.19699 1.19618 1.31076 1.43435 1.61489 1.80503 1.92594 2.05070 2.06665 2.51302 2.76817 3.03666 3.20619 3.41525 3.52487 3.66292 3.70582 3.77724 4.00173 4.08390 4.16889 4.27743 4.33342 4.38512 4.44704 4.54220 4.58204 4.61423 4.68230 4.71557 4.73598 4.77362 4.84072 4.86765 4.97175 5.00737 5.09646 5.20381 5.23328 5.27466 5.31211 5.35196 5.36864 5.53123 5.59312 5.94844 5.95757 6.19873 6.42137 6.53304 6.70670 7.21106 7.33760 8.28986 8.90166 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.016433 B = 0.002460 C = 0.002340 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1703.528883 B =11381.063581 C =11963.276469 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.168 3.832 3 H 0.042 0.958 4 N -0.701 5.701 5 C 0.552 3.448 6 O -0.587 6.587 7 C -0.163 4.163 8 C -0.043 4.043 9 C -0.144 4.144 10 C 0.159 3.841 11 N -0.407 5.407 12 C -0.033 4.033 13 C -0.200 4.200 14 C -0.202 4.202 15 C -0.024 4.024 16 C -0.152 4.152 17 C -0.043 4.043 18 C -0.107 4.107 19 C 0.125 3.875 20 N -0.665 5.665 21 C -0.281 4.281 22 H 0.048 0.952 23 C -0.092 4.092 24 N -0.976 5.976 25 Si 1.111 2.889 26 H -0.308 1.308 27 H -0.289 1.289 28 H -0.248 1.248 29 C 0.088 3.912 30 H 0.091 0.909 31 H 0.041 0.959 32 H 0.063 0.937 33 H 0.417 0.583 34 H 0.169 0.831 35 H 0.167 0.833 36 H 0.180 0.820 37 H 0.155 0.845 38 H 0.158 0.842 39 H 0.192 0.808 40 H 0.151 0.849 41 H 0.131 0.869 42 H 0.140 0.860 43 H 0.050 0.950 44 H 0.067 0.933 45 H 0.245 0.755 46 H 0.068 0.932 47 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.890 -24.263 22.891 33.714 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.063 3.937 3 H 0.060 0.940 4 N -0.354 5.354 5 C 0.340 3.660 6 O -0.468 6.468 7 C -0.167 4.167 8 C -0.062 4.062 9 C -0.164 4.164 10 C 0.066 3.934 11 N -0.080 5.080 12 C -0.158 4.158 13 C -0.224 4.224 14 C -0.226 4.226 15 C -0.149 4.149 16 C -0.171 4.171 17 C -0.063 4.063 18 C -0.126 4.126 19 C 0.000 4.000 20 N -0.394 5.394 21 C -0.409 4.409 22 H 0.065 0.935 23 C -0.283 4.283 24 N -0.622 5.622 25 Si 0.938 3.062 26 H -0.236 1.236 27 H -0.217 1.217 28 H -0.172 1.172 29 C -0.036 4.036 30 H 0.110 0.890 31 H 0.060 0.940 32 H 0.082 0.918 33 H 0.256 0.744 34 H 0.186 0.814 35 H 0.185 0.815 36 H 0.197 0.803 37 H 0.172 0.828 38 H 0.175 0.825 39 H 0.209 0.791 40 H 0.168 0.832 41 H 0.149 0.851 42 H 0.158 0.842 43 H 0.068 0.932 44 H 0.085 0.915 45 H 0.054 0.946 46 H 0.085 0.915 47 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -3.616 -23.116 23.139 32.906 hybrid contribution -1.424 1.020 -1.016 2.026 sum -5.040 -22.095 22.123 31.671 Atomic orbital electron populations 1.22019 0.93399 1.03604 1.01561 1.20427 0.94900 0.95556 0.82827 0.93964 1.45775 1.66507 1.14607 1.08488 1.18656 0.77072 0.86059 0.84176 1.90792 1.52381 1.17835 1.85768 1.19931 1.07443 0.95772 0.93506 1.21437 0.93390 0.91739 0.99640 1.21053 1.03110 1.02025 0.90180 1.18295 0.96252 0.92257 0.86642 1.41792 1.49225 1.09554 1.07410 1.22369 1.08689 1.00906 0.83876 1.21375 1.07033 0.93370 1.00614 1.21389 1.07686 1.00012 0.93503 1.22473 1.06797 0.84814 1.00796 1.20884 1.03393 0.92757 1.00081 1.21135 0.93931 1.00346 0.90879 1.23017 0.95211 1.01255 0.93109 1.22664 0.90852 0.91316 0.95142 1.46152 1.16417 1.12412 1.64424 1.19983 0.95264 0.90798 1.34879 0.93452 1.26995 0.98713 0.99774 1.02820 1.71005 1.37784 1.16863 1.36566 0.83238 0.73058 0.75111 0.74805 1.23590 1.21734 1.17246 1.23114 0.96387 0.90287 0.93854 0.88994 0.93991 0.91807 0.74412 0.81354 0.81541 0.80285 0.82755 0.82460 0.79124 0.83152 0.85096 0.84205 0.93178 0.91511 0.94604 0.91477 0.94627 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.79 9.29 71.98 0.67 -3.13 16 2 C 0.17 5.11 2.43 44.99 0.11 5.22 16 3 H 0.04 1.85 7.36 -2.39 -0.02 1.83 16 4 N -0.70 -17.02 5.03 -445.58 -2.24 -19.26 16 5 C 0.55 16.41 7.73 86.73 0.67 17.08 16 6 O -0.59 -23.82 16.00 -3.96 -0.06 -23.88 16 7 C -0.16 -3.62 5.88 -20.08 -0.12 -3.73 16 8 C -0.04 -0.60 9.53 22.50 0.21 -0.38 16 9 C -0.14 -1.80 9.43 22.34 0.21 -1.59 16 10 C 0.16 2.56 6.62 38.27 0.25 2.81 16 11 N -0.41 -6.38 2.97 -346.58 -1.03 -7.41 16 12 C -0.03 -0.50 10.73 83.15 0.89 0.39 16 13 C -0.20 -2.87 10.86 22.15 0.24 -2.63 16 14 C -0.20 -2.72 10.86 22.16 0.24 -2.48 16 15 C -0.02 -0.31 10.73 83.16 0.89 0.58 16 16 C -0.15 -2.65 9.43 22.34 0.21 -2.44 16 17 C -0.04 -0.96 9.58 22.50 0.22 -0.74 16 18 C -0.11 -2.93 3.73 -10.37 -0.04 -2.97 16 19 C 0.13 4.32 8.08 83.17 0.67 5.00 16 20 N -0.66 -31.81 3.49 -738.04 -2.58 -34.38 16 21 C -0.28 -16.91 11.08 84.03 0.93 -15.98 16 22 H 0.05 3.09 8.06 -2.91 -0.02 3.06 16 23 C -0.09 -5.76 5.50 84.86 0.47 -5.29 16 24 N -0.98 -66.04 13.70 21.65 0.30 -65.74 16 25 Si 1.11 56.43 25.16 68.60 1.73 58.16 16 26 H -0.31 -16.06 7.11 99.48 0.71 -15.35 16 27 H -0.29 -14.33 6.51 99.48 0.65 -13.68 16 28 H -0.25 -10.81 6.20 99.48 0.62 -10.19 16 29 C 0.09 3.34 5.24 83.26 0.44 3.77 16 30 H 0.09 1.65 8.14 -2.39 -0.02 1.63 16 31 H 0.04 1.21 8.14 -2.39 -0.02 1.19 16 32 H 0.06 1.72 6.50 -2.39 -0.02 1.71 16 33 H 0.42 6.07 6.62 -92.71 -0.61 5.46 16 34 H 0.17 1.13 6.39 -2.91 -0.02 1.12 16 35 H 0.17 1.03 6.68 -2.91 -0.02 1.01 16 36 H 0.18 1.94 6.99 -2.91 -0.02 1.92 16 37 H 0.15 1.64 8.06 -2.91 -0.02 1.61 16 38 H 0.16 1.47 8.06 -2.91 -0.02 1.44 16 39 H 0.19 1.28 6.99 -2.91 -0.02 1.26 16 40 H 0.15 2.04 6.68 -2.91 -0.02 2.02 16 41 H 0.13 3.19 7.64 -2.91 -0.02 3.17 16 42 H 0.14 2.29 8.14 -2.39 -0.02 2.27 16 43 H 0.05 1.72 6.43 -2.39 -0.02 1.71 16 44 H 0.07 2.03 8.14 -2.39 -0.02 2.01 16 45 H 0.24 16.61 8.73 -92.71 -0.81 15.80 16 46 H 0.07 2.31 7.66 -2.39 -0.02 2.29 16 47 H 0.04 1.49 4.71 -2.39 -0.01 1.48 16 Total: -1.00 -87.73 379.00 3.48 -84.25 By element: Atomic # 1 Polarization: 14.56 SS G_CDS: 0.20 Total: 14.76 kcal Atomic # 6 Polarization: -13.67 SS G_CDS: 7.17 Total: -6.50 kcal Atomic # 7 Polarization: -121.23 SS G_CDS: -5.55 Total: -126.78 kcal Atomic # 8 Polarization: -23.82 SS G_CDS: -0.06 Total: -23.88 kcal Atomic # 14 Polarization: 56.43 SS G_CDS: 1.73 Total: 58.16 kcal Total: -87.73 3.48 -84.25 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000970079967.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 174.134 kcal (2) G-P(sol) polarization free energy of solvation -87.733 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 86.401 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.482 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.250 kcal (6) G-S(sol) free energy of system = (1) + (5) 89.883 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds