Wall clock time and date at job start Tue Mar 31 2020 22:51:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09010 * 109.47160 * 2 1 4 4 N 1.46493 * 109.47509 * 239.99594 * 2 1 3 5 5 C 1.34780 * 120.00036 * 84.99868 * 4 2 1 6 6 O 1.21553 * 119.99598 * 0.02562 * 5 4 2 7 7 C 1.47849 * 120.00280 * 180.02562 * 5 4 2 8 8 C 1.39620 * 120.11313 * 0.27837 * 7 5 4 9 9 C 1.37975 * 119.98349 * 180.25443 * 8 7 5 10 10 C 1.38261 * 120.21997 * 359.49196 * 9 8 7 11 11 C 1.38909 * 120.22616 * 0.22779 * 10 9 8 12 12 N 1.40227 * 119.99445 * 180.02562 * 11 10 9 13 13 C 1.36565 * 125.67112 * 179.70177 * 12 11 10 14 14 C 1.34853 * 108.20234 * 179.82946 * 13 12 11 15 15 C 1.40943 * 107.46658 * 0.42191 * 14 13 12 16 16 C 1.34854 * 107.46579 * 359.73361 * 15 14 13 17 17 C 1.38589 * 120.01229 * 0.03091 * 11 10 9 18 18 C 1.52998 * 109.46832 * 119.99424 * 2 1 3 19 19 C 1.53938 * 113.74642 * 282.19929 * 18 2 1 20 20 N 1.47816 * 86.04089 * 222.08746 * 19 18 2 21 21 C 1.36937 * 134.45468 * 204.64853 * 20 19 18 22 22 H 1.08002 * 119.99451 * 182.57544 * 21 20 19 23 23 C 1.38808 * 120.00469 * 2.57730 * 21 20 19 24 24 N 1.31624 * 119.99814 * 353.41835 * 23 21 20 25 25 Si 1.86800 * 120.00160 * 173.41413 * 23 21 20 26 26 H 1.48511 * 109.46845 * 94.97364 * 25 23 21 27 27 H 1.48493 * 109.47401 * 214.97183 * 25 23 21 28 28 H 1.48495 * 109.47270 * 334.97733 * 25 23 21 29 29 C 1.47584 * 91.04721 * 24.54650 * 20 19 18 30 30 H 1.08998 * 109.46889 * 184.49130 * 1 2 3 31 31 H 1.08998 * 109.46896 * 304.49431 * 1 2 3 32 32 H 1.08997 * 109.46769 * 64.48939 * 1 2 3 33 33 H 0.96999 * 120.00433 * 265.00097 * 4 2 1 34 34 H 1.07998 * 120.00573 * 0.02562 * 8 7 5 35 35 H 1.08001 * 119.89088 * 179.76581 * 9 8 7 36 36 H 1.08007 * 119.88808 * 180.26017 * 10 9 8 37 37 H 1.07997 * 125.89437 * 359.97438 * 13 12 11 38 38 H 1.07999 * 126.26713 * 180.15667 * 14 13 12 39 39 H 1.07997 * 126.26919 * 179.73679 * 15 14 13 40 40 H 1.08003 * 125.90009 * 179.97438 * 16 15 14 41 41 H 1.07999 * 120.10791 * 180.02562 * 17 11 10 42 42 H 1.09004 * 112.94502 * 53.79268 * 18 2 1 43 43 H 1.09003 * 113.77399 * 336.34803 * 19 18 2 44 44 H 1.09000 * 113.77375 * 107.74488 * 19 18 2 45 45 H 0.96996 * 119.99329 * 180.02562 * 24 23 21 46 46 H 1.09004 * 113.76561 * 221.15199 * 29 20 19 47 47 H 1.08998 * 113.86378 * 89.77132 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0278 0.0000 4 7 2.0184 -0.6906 -1.1960 5 6 2.1472 -0.0184 -2.3571 6 8 1.8585 1.1611 -2.4116 7 6 2.6396 -0.7155 -3.5644 8 6 2.9664 -2.0716 -3.5058 9 6 3.4306 -2.7183 -4.6328 10 6 3.5639 -2.0303 -5.8247 11 6 3.2358 -0.6823 -5.8944 12 7 3.3724 0.0106 -7.1059 13 6 3.0796 1.3293 -7.3064 14 6 3.3435 1.6283 -8.5946 15 6 3.8070 0.4510 -9.2157 16 6 3.8148 -0.5227 -8.2827 17 6 2.7737 -0.0221 -4.7670 18 6 2.0400 -0.7211 1.2493 19 6 1.9658 0.1299 2.5299 20 7 3.3032 -0.4144 2.8463 21 6 4.0102 -0.6096 4.0027 22 1 5.0166 -0.9994 3.9611 23 6 3.4334 -0.3066 5.2284 24 7 2.2600 0.2879 5.2746 25 14 4.3225 -0.7427 6.8124 26 1 5.0966 0.4332 7.2853 27 1 3.3299 -1.1303 7.8466 28 1 5.2478 -1.8773 6.5644 29 6 3.5693 -0.6650 1.4165 30 1 -0.3633 -1.0245 0.0805 31 1 -0.3633 0.5820 0.8470 32 1 -0.3633 0.4426 -0.9275 33 1 2.2492 -1.6318 -1.1525 34 1 2.8593 -2.6134 -2.5777 35 1 3.6865 -3.7664 -4.5849 36 1 3.9238 -2.5428 -6.7046 37 1 2.7040 2.0149 -6.5613 38 1 3.2183 2.5922 -9.0654 39 1 4.1019 0.3476 -10.2495 40 1 4.1181 -1.5474 -8.4393 41 1 2.5178 1.0258 -4.8196 42 1 1.6225 -1.7217 1.3626 43 1 1.9614 1.2039 2.3442 44 1 1.1863 -0.1863 3.2231 45 1 1.8572 0.5000 6.1311 46 1 4.0677 -1.6148 1.2223 47 1 4.0371 0.1739 0.9013 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000970090647.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:51:58 Heat of formation + Delta-G solvation = 83.574661 kcal Electronic energy + Delta-G solvation = -27947.157707 eV Core-core repulsion = 24097.014005 eV Total energy + Delta-G solvation = -3850.143702 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -42.60560 -41.33966 -39.98495 -39.06994 -36.28441 -34.47659 -34.03373 -32.69332 -31.64631 -29.81360 -29.73307 -29.30403 -26.65883 -25.88532 -25.06793 -24.10840 -22.89934 -21.94013 -21.16990 -20.96801 -20.49771 -19.65539 -18.78860 -17.76997 -17.52278 -17.06114 -16.85059 -16.26249 -16.00816 -15.80275 -15.77347 -15.64688 -15.14409 -14.98152 -14.75973 -14.55748 -14.41499 -14.07693 -13.61582 -13.34456 -13.26794 -13.23462 -13.14368 -13.09259 -12.99390 -12.78464 -12.67913 -12.43402 -12.36617 -12.05844 -11.80880 -11.60795 -11.26183 -11.01547 -10.92076 -10.82459 -10.27137 -10.02028 -9.23574 -9.05245 -8.93756 -7.91969 -5.24311 -0.36176 -0.03397 1.34535 1.45525 1.46880 1.56465 1.76151 1.88302 2.03838 2.09878 2.47006 2.78387 3.29368 3.36964 3.46581 3.66928 3.74634 3.84580 3.93466 4.04187 4.06916 4.14599 4.25028 4.26859 4.42055 4.47265 4.56860 4.59162 4.69956 4.76505 4.80325 4.81282 4.85635 4.94648 4.97849 5.07689 5.16629 5.24221 5.24388 5.29088 5.30296 5.34857 5.46214 5.54127 5.62961 5.64668 5.92999 5.94968 6.19459 6.43653 6.51866 6.91279 7.16299 7.60266 8.55920 9.25599 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.023858 B = 0.001952 C = 0.001911 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1173.341695 B =14337.937811 C =14650.548273 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.162 3.838 3 H 0.060 0.940 4 N -0.697 5.697 5 C 0.555 3.445 6 O -0.582 6.582 7 C -0.117 4.117 8 C -0.092 4.092 9 C -0.085 4.085 10 C -0.111 4.111 11 C 0.117 3.883 12 N -0.405 5.405 13 C -0.041 4.041 14 C -0.200 4.200 15 C -0.204 4.204 16 C -0.020 4.020 17 C -0.102 4.102 18 C -0.107 4.107 19 C 0.170 3.830 20 N -0.643 5.643 21 C -0.236 4.236 22 H 0.084 0.916 23 C -0.068 4.068 24 N -0.954 5.954 25 Si 0.979 3.021 26 H -0.291 1.291 27 H -0.292 1.292 28 H -0.265 1.265 29 C 0.127 3.873 30 H 0.077 0.923 31 H 0.063 0.937 32 H 0.050 0.950 33 H 0.415 0.585 34 H 0.160 0.840 35 H 0.179 0.821 36 H 0.163 0.837 37 H 0.164 0.836 38 H 0.152 0.848 39 H 0.160 0.840 40 H 0.196 0.804 41 H 0.123 0.877 42 H 0.111 0.889 43 H 0.009 0.991 44 H 0.047 0.953 45 H 0.249 0.751 46 H 0.066 0.934 47 H 0.029 0.971 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.552 -9.567 -28.455 30.025 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.056 3.944 3 H 0.078 0.922 4 N -0.348 5.348 5 C 0.343 3.657 6 O -0.463 6.463 7 C -0.121 4.121 8 C -0.111 4.111 9 C -0.103 4.103 10 C -0.131 4.131 11 C 0.025 3.975 12 N -0.077 5.077 13 C -0.167 4.167 14 C -0.224 4.224 15 C -0.227 4.227 16 C -0.146 4.146 17 C -0.123 4.123 18 C -0.127 4.127 19 C 0.044 3.956 20 N -0.370 5.370 21 C -0.365 4.365 22 H 0.101 0.899 23 C -0.261 4.261 24 N -0.603 5.603 25 Si 0.807 3.193 26 H -0.218 1.218 27 H -0.218 1.218 28 H -0.189 1.189 29 C 0.002 3.998 30 H 0.096 0.904 31 H 0.082 0.918 32 H 0.070 0.930 33 H 0.253 0.747 34 H 0.177 0.823 35 H 0.196 0.804 36 H 0.180 0.820 37 H 0.181 0.819 38 H 0.170 0.830 39 H 0.178 0.822 40 H 0.213 0.787 41 H 0.141 0.859 42 H 0.129 0.871 43 H 0.027 0.973 44 H 0.065 0.935 45 H 0.058 0.942 46 H 0.084 0.916 47 H 0.047 0.953 Dipole moment (debyes) X Y Z Total from point charges 0.388 -8.892 -27.886 29.272 hybrid contribution 0.357 0.607 1.290 1.470 sum 0.745 -8.285 -26.596 27.866 Atomic orbital electron populations 1.22047 0.93931 1.03247 1.01775 1.20798 0.94806 0.95921 0.82847 0.92178 1.45796 1.65922 1.14690 1.08419 1.18557 0.77164 0.86078 0.83894 1.90761 1.52324 1.17538 1.85676 1.19668 1.04426 0.95537 0.92475 1.21736 0.96403 0.91898 1.01026 1.21422 0.96595 1.01999 0.90315 1.21426 0.99790 0.90826 1.01024 1.17944 1.01999 0.93098 0.84497 1.41789 1.49529 1.09035 1.07353 1.22208 1.09562 0.85368 0.99597 1.21325 1.07030 1.00415 0.93616 1.21353 1.08025 0.92852 1.00514 1.22471 1.06926 1.01421 0.83777 1.20818 0.99799 1.00540 0.91094 1.23450 0.96010 1.00513 0.92725 1.22143 0.88295 0.93692 0.91508 1.46487 1.16984 1.72296 1.01211 1.19441 0.97309 1.35797 0.83907 0.89870 1.25645 0.98324 1.01400 1.00717 1.70014 1.18796 1.46968 1.24473 0.85062 0.77268 0.77921 0.79071 1.21838 1.21850 1.18944 1.22686 0.94851 0.98538 0.83740 0.90421 0.91821 0.93043 0.74662 0.82267 0.80402 0.81992 0.81859 0.83009 0.82195 0.78724 0.85905 0.87110 0.97308 0.93505 0.94225 0.91568 0.95349 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.04 9.43 71.98 0.68 -3.36 16 2 C 0.16 4.76 2.28 44.99 0.10 4.86 16 3 H 0.06 2.17 7.49 -2.38 -0.02 2.15 16 4 N -0.70 -16.33 4.90 -445.40 -2.18 -18.51 16 5 C 0.55 15.10 7.74 86.79 0.67 15.78 16 6 O -0.58 -21.02 16.01 -3.88 -0.06 -21.08 16 7 C -0.12 -2.47 5.87 -20.10 -0.12 -2.59 16 8 C -0.09 -1.18 9.54 22.54 0.21 -0.97 16 9 C -0.09 -0.76 10.02 22.21 0.22 -0.54 16 10 C -0.11 -1.28 9.45 22.44 0.21 -1.07 16 11 C 0.12 2.14 6.61 38.04 0.25 2.39 16 12 N -0.40 -7.72 2.97 -346.78 -1.03 -8.75 16 13 C -0.04 -0.84 10.73 83.18 0.89 0.05 16 14 C -0.20 -3.65 10.86 22.15 0.24 -3.41 16 15 C -0.20 -3.20 10.86 22.15 0.24 -2.96 16 16 C -0.02 -0.30 10.73 83.18 0.89 0.59 16 17 C -0.10 -2.28 9.00 22.65 0.20 -2.08 16 18 C -0.11 -3.60 3.35 -10.14 -0.03 -3.63 16 19 C 0.17 7.94 7.02 86.44 0.61 8.54 16 20 N -0.64 -32.77 3.70 -716.05 -2.65 -35.42 16 21 C -0.24 -13.26 10.69 84.03 0.90 -12.36 16 22 H 0.08 4.45 7.84 -2.91 -0.02 4.43 16 23 C -0.07 -3.88 5.50 84.86 0.47 -3.42 16 24 N -0.95 -57.77 11.43 21.65 0.25 -57.52 16 25 Si 0.98 45.65 29.56 68.60 2.03 47.67 16 26 H -0.29 -13.53 7.11 99.48 0.71 -12.83 16 27 H -0.29 -13.62 7.11 99.48 0.71 -12.91 16 28 H -0.26 -11.55 7.11 99.48 0.71 -10.84 16 29 C 0.13 4.85 8.38 86.49 0.72 5.57 16 30 H 0.08 1.73 8.14 -2.39 -0.02 1.71 16 31 H 0.06 1.80 8.14 -2.39 -0.02 1.78 16 32 H 0.05 1.41 8.14 -2.39 -0.02 1.39 16 33 H 0.42 6.80 6.63 -92.71 -0.61 6.19 16 34 H 0.16 1.20 6.40 -2.91 -0.02 1.18 16 35 H 0.18 0.27 8.06 -2.91 -0.02 0.25 16 36 H 0.16 0.90 6.69 -2.91 -0.02 0.88 16 37 H 0.16 3.19 7.00 -2.91 -0.02 3.17 16 38 H 0.15 2.23 8.06 -2.91 -0.02 2.21 16 39 H 0.16 1.74 8.06 -2.91 -0.02 1.71 16 40 H 0.20 1.44 7.00 -2.91 -0.02 1.42 16 41 H 0.12 3.14 6.29 -2.91 -0.02 3.12 16 42 H 0.11 3.33 8.14 -2.38 -0.02 3.31 16 43 H 0.01 0.45 8.04 -2.39 -0.02 0.43 16 44 H 0.05 2.43 7.20 -2.39 -0.02 2.41 16 45 H 0.25 14.62 8.31 -92.71 -0.77 13.85 16 46 H 0.07 2.22 8.14 -2.39 -0.02 2.20 16 47 H 0.03 1.13 8.10 -2.39 -0.02 1.11 16 Total: -1.00 -77.96 389.84 4.09 -73.87 By element: Atomic # 1 Polarization: 17.95 SS G_CDS: 0.37 Total: 18.33 kcal Atomic # 6 Polarization: -5.96 SS G_CDS: 7.37 Total: 1.41 kcal Atomic # 7 Polarization: -114.58 SS G_CDS: -5.62 Total: -120.20 kcal Atomic # 8 Polarization: -21.02 SS G_CDS: -0.06 Total: -21.08 kcal Atomic # 14 Polarization: 45.65 SS G_CDS: 2.03 Total: 47.67 kcal Total: -77.96 4.09 -73.87 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000970090647.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 157.447 kcal (2) G-P(sol) polarization free energy of solvation -77.963 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.484 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.090 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.873 kcal (6) G-S(sol) free energy of system = (1) + (5) 83.575 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds