Wall clock time and date at job start Tue Mar 31 2020 22:52:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09003 * 109.47045 * 2 1 4 4 N 1.46500 * 109.47273 * 240.00369 * 2 1 3 5 5 C 1.34770 * 120.00327 * 84.99744 * 4 2 1 6 6 O 1.21585 * 120.00294 * 0.02562 * 5 4 2 7 7 C 1.47576 * 120.00344 * 180.02562 * 5 4 2 8 8 C 1.39658 * 120.19124 * 325.99986 * 7 5 4 9 9 C 1.37830 * 119.91921 * 179.97438 * 8 7 5 10 10 C 1.38524 * 120.31230 * 0.02562 * 9 8 7 11 11 C 1.38078 * 120.38951 * 359.97438 * 10 9 8 12 12 C 1.38759 * 120.07572 * 0.28013 * 11 10 9 13 13 N 1.39667 * 120.15597 * 179.74493 * 12 11 10 14 14 C 1.36654 * 125.67806 * 123.13785 * 13 12 11 15 15 C 1.34809 * 108.18953 * 179.86468 * 14 13 12 16 16 C 1.40993 * 107.48896 * 0.39255 * 15 14 13 17 17 C 1.34816 * 107.48545 * 359.75377 * 16 15 14 18 18 C 1.52996 * 109.47561 * 119.99892 * 2 1 3 19 19 C 1.53948 * 113.74351 * 281.83994 * 18 2 1 20 20 N 1.47809 * 86.03454 * 222.08066 * 19 18 2 21 21 C 1.36939 * 134.45261 * 204.64036 * 20 19 18 22 22 H 1.08004 * 119.99812 * 179.86427 * 21 20 19 23 23 C 1.38807 * 120.00456 * 359.86895 * 21 20 19 24 24 N 1.31625 * 119.99640 * 359.97438 * 23 21 20 25 25 Si 1.86803 * 120.00483 * 180.02562 * 23 21 20 26 26 H 1.48493 * 109.47247 * 89.99943 * 25 23 21 27 27 H 1.48496 * 109.47027 * 209.99996 * 25 23 21 28 28 H 1.48498 * 109.46847 * 329.99735 * 25 23 21 29 29 C 1.47573 * 91.05301 * 24.54435 * 20 19 18 30 30 H 1.09006 * 109.46824 * 184.97964 * 1 2 3 31 31 H 1.08997 * 109.47368 * 304.97697 * 1 2 3 32 32 H 1.09003 * 109.47540 * 64.98095 * 1 2 3 33 33 H 0.97000 * 119.99515 * 264.99550 * 4 2 1 34 34 H 1.08003 * 120.04078 * 359.97352 * 8 7 5 35 35 H 1.08003 * 119.84394 * 180.02562 * 9 8 7 36 36 H 1.08002 * 119.80817 * 179.97438 * 10 9 8 37 37 H 1.08003 * 119.95861 * 179.97438 * 11 10 9 38 38 H 1.07999 * 125.90345 * 359.97438 * 14 13 12 39 39 H 1.08002 * 126.25472 * 180.10395 * 15 14 13 40 40 H 1.07995 * 126.25742 * 179.71955 * 16 15 14 41 41 H 1.07995 * 125.90467 * 179.97438 * 17 16 15 42 42 H 1.09004 * 112.94113 * 53.42118 * 18 2 1 43 43 H 1.09005 * 113.76602 * 336.34475 * 19 18 2 44 44 H 1.08997 * 113.77186 * 107.74192 * 19 18 2 45 45 H 0.97007 * 119.99763 * 180.02562 * 24 23 21 46 46 H 1.08997 * 113.77082 * 221.15085 * 29 20 19 47 47 H 1.09005 * 113.87250 * 89.76914 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6905 -1.1962 5 6 2.1470 -0.0182 -2.3571 6 8 1.8583 1.1616 -2.4117 7 6 2.6384 -0.7139 -3.5622 8 6 3.5885 -1.7312 -3.4476 9 6 4.0431 -2.3776 -4.5768 10 6 3.5626 -2.0229 -5.8267 11 6 2.6233 -1.0191 -5.9549 12 6 2.1583 -0.3540 -4.8293 13 7 1.2120 0.6653 -4.9575 14 6 -0.0079 0.7021 -4.3429 15 6 -0.6296 1.8407 -4.7096 16 6 0.2311 2.5292 -5.5888 17 6 1.3497 1.7888 -5.7231 18 6 2.0400 -0.7212 1.2492 19 6 1.9741 0.1329 2.5284 20 7 3.3096 -0.4177 2.8417 21 6 4.0191 -0.6141 3.9964 22 1 5.0064 -1.0500 3.9560 23 6 3.4694 -0.2532 5.2188 24 7 2.2663 0.2785 5.2680 25 14 4.4375 -0.5205 6.7938 26 1 5.2523 0.6864 7.0849 27 1 3.4976 -0.7659 7.9170 28 1 5.3322 -1.6945 6.6316 29 6 3.5700 -0.6727 1.4117 30 1 -0.3633 -1.0239 0.0892 31 1 -0.3634 0.5891 0.8420 32 1 -0.3634 0.4346 -0.9312 33 1 2.2491 -1.6317 -1.1526 34 1 3.9664 -2.0110 -2.4754 35 1 4.7775 -3.1644 -4.4868 36 1 3.9249 -2.5346 -6.7062 37 1 2.2537 -0.7479 -6.9328 38 1 -0.4046 -0.0499 -3.6770 39 1 -1.6100 2.1640 -4.3919 40 1 0.0306 3.4762 -6.0677 41 1 2.2063 2.0400 -6.3310 42 1 1.6177 -1.7193 1.3658 43 1 1.9746 1.2065 2.3402 44 1 1.1951 -0.1779 3.2245 45 1 1.8822 0.5311 6.1223 46 1 4.0629 -1.6254 1.2180 47 1 4.0406 0.1627 0.8932 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000970364786.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:52:08 Heat of formation + Delta-G solvation = 108.737333 kcal Electronic energy + Delta-G solvation = -29058.140540 eV Core-core repulsion = 25209.087973 eV Total energy + Delta-G solvation = -3849.052567 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -41.71980 -39.93467 -38.80162 -37.84013 -34.85233 -33.29454 -32.43496 -31.80881 -30.12528 -29.00517 -28.78576 -27.48878 -25.04443 -24.42118 -23.72032 -23.24098 -21.51911 -20.50503 -20.23469 -20.16951 -19.30107 -18.42102 -17.49538 -16.82708 -16.36571 -15.63864 -15.52827 -15.06680 -14.78979 -14.69620 -14.26981 -14.03309 -13.87557 -13.70012 -13.58271 -13.50016 -13.21438 -12.78047 -12.35962 -12.30770 -12.26033 -12.06432 -12.04403 -11.80802 -11.60114 -11.41683 -11.23841 -10.90118 -10.68467 -10.37271 -10.12996 -9.83282 -9.73587 -9.62174 -9.44853 -9.43668 -8.88141 -8.79738 -8.43704 -8.11098 -6.88580 -5.77583 -3.09857 0.42918 0.73680 2.29691 2.68068 2.82354 3.11443 3.14371 3.38221 3.38648 3.42975 3.45130 4.37352 4.42345 4.44507 4.57018 4.78479 4.86070 4.89882 5.09601 5.15784 5.18253 5.29241 5.37971 5.40648 5.49440 5.53698 5.62782 5.65696 5.78941 5.80354 5.81591 5.93813 5.98530 6.06326 6.25156 6.27047 6.29164 6.29994 6.33738 6.43260 6.56525 6.61024 6.78427 6.97777 7.19258 7.21479 7.34823 7.45427 7.54393 7.57660 7.97280 8.25723 9.03754 9.70083 10.59067 11.39612 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.017530 B = 0.002605 C = 0.002351 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1596.916986 B =10745.534641 C =11905.326220 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.152 3.848 3 H 0.088 0.912 4 N -0.712 5.712 5 C 0.548 3.452 6 O -0.513 6.513 7 C -0.127 4.127 8 C -0.075 4.075 9 C -0.122 4.122 10 C -0.086 4.086 11 C -0.125 4.125 12 C 0.170 3.830 13 N -0.400 5.400 14 C 0.016 3.984 15 C -0.194 4.194 16 C -0.192 4.192 17 C -0.007 4.007 18 C -0.147 4.147 19 C 0.176 3.824 20 N -0.612 5.612 21 C -0.224 4.224 22 H 0.079 0.921 23 C -0.008 4.008 24 N -0.921 5.921 25 Si 0.912 3.088 26 H -0.289 1.289 27 H -0.290 1.290 28 H -0.281 1.281 29 C 0.125 3.875 30 H 0.053 0.947 31 H 0.070 0.930 32 H 0.053 0.947 33 H 0.397 0.603 34 H 0.139 0.861 35 H 0.135 0.865 36 H 0.135 0.865 37 H 0.135 0.865 38 H 0.152 0.848 39 H 0.135 0.865 40 H 0.135 0.865 41 H 0.158 0.842 42 H 0.088 0.912 43 H 0.028 0.972 44 H 0.075 0.925 45 H 0.254 0.746 46 H 0.040 0.960 47 H 0.031 0.969 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.985 -5.574 -25.299 25.982 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.048 3.952 3 H 0.106 0.894 4 N -0.362 5.362 5 C 0.333 3.667 6 O -0.389 6.389 7 C -0.132 4.132 8 C -0.094 4.094 9 C -0.140 4.140 10 C -0.105 4.105 11 C -0.145 4.145 12 C 0.078 3.922 13 N -0.074 5.074 14 C -0.111 4.111 15 C -0.218 4.218 16 C -0.216 4.216 17 C -0.133 4.133 18 C -0.167 4.167 19 C 0.050 3.950 20 N -0.338 5.338 21 C -0.352 4.352 22 H 0.097 0.903 23 C -0.204 4.204 24 N -0.568 5.568 25 Si 0.742 3.258 26 H -0.216 1.216 27 H -0.216 1.216 28 H -0.207 1.207 29 C -0.001 4.001 30 H 0.072 0.928 31 H 0.089 0.911 32 H 0.072 0.928 33 H 0.231 0.769 34 H 0.157 0.843 35 H 0.153 0.847 36 H 0.153 0.847 37 H 0.153 0.847 38 H 0.169 0.831 39 H 0.153 0.847 40 H 0.153 0.847 41 H 0.175 0.825 42 H 0.107 0.893 43 H 0.046 0.954 44 H 0.093 0.907 45 H 0.064 0.936 46 H 0.058 0.942 47 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges -1.940 -4.916 -24.906 25.461 hybrid contribution 0.785 -0.420 1.006 1.343 sum -1.155 -5.335 -23.901 24.516 Atomic orbital electron populations 1.22103 0.95314 1.01869 1.02235 1.21136 0.93879 0.97452 0.82760 0.89404 1.46088 1.66690 1.13911 1.09540 1.18057 0.78744 0.86946 0.82932 1.90883 1.48686 1.14779 1.84543 1.20200 1.00329 0.99479 0.93194 1.21362 0.94879 0.93098 1.00045 1.21231 1.00370 1.00303 0.92077 1.21225 0.95277 0.95871 0.98130 1.21135 0.99049 0.96501 0.97768 1.17622 0.91830 0.90047 0.92719 1.41176 1.12755 1.15925 1.37498 1.21664 0.85604 1.01474 1.02338 1.20822 1.01201 0.95903 1.03895 1.20852 0.95097 1.01109 1.04558 1.21759 1.01232 0.88588 1.01758 1.23866 0.97550 1.00746 0.94536 1.22224 0.89611 0.93886 0.89237 1.45986 1.16328 1.71880 0.99597 1.19017 0.98444 1.34892 0.82817 0.90333 1.24784 0.97058 1.01105 0.97497 1.69812 1.15322 1.47225 1.24421 0.86127 0.78782 0.77777 0.83116 1.21618 1.21595 1.20656 1.22526 0.93066 0.97581 0.86921 0.92765 0.91074 0.92766 0.76864 0.84285 0.84681 0.84745 0.84720 0.83055 0.84711 0.84680 0.82490 0.89327 0.95410 0.90666 0.93607 0.94225 0.95093 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.20 9.43 37.15 0.35 -1.85 16 2 C 0.15 2.32 2.29 -67.94 -0.16 2.17 16 3 H 0.09 1.59 7.48 -51.93 -0.39 1.20 16 4 N -0.71 -9.15 4.85 -54.84 -0.27 -9.41 16 5 C 0.55 7.78 6.66 -12.45 -0.08 7.70 16 6 O -0.51 -9.24 14.23 5.29 0.08 -9.16 16 7 C -0.13 -1.48 5.80 -104.82 -0.61 -2.09 16 8 C -0.07 -0.65 9.32 -39.20 -0.37 -1.02 16 9 C -0.12 -0.82 10.02 -39.63 -0.40 -1.22 16 10 C -0.09 -0.56 10.03 -39.53 -0.40 -0.95 16 11 C -0.13 -1.05 9.76 -39.45 -0.38 -1.43 16 12 C 0.17 1.93 5.84 -83.36 -0.49 1.44 16 13 N -0.40 -5.11 2.05 -60.69 -0.12 -5.23 16 14 C 0.02 0.22 8.89 -16.62 -0.15 0.07 16 15 C -0.19 -2.53 10.86 -39.75 -0.43 -2.96 16 16 C -0.19 -2.37 10.86 -39.75 -0.43 -2.80 16 17 C -0.01 -0.09 11.21 -16.62 -0.19 -0.27 16 18 C -0.15 -2.59 3.35 -89.70 -0.30 -2.89 16 19 C 0.18 4.07 7.03 -2.84 -0.02 4.05 16 20 N -0.61 -15.64 3.70 -177.73 -0.66 -16.30 16 21 C -0.22 -6.31 10.70 -15.06 -0.16 -6.47 16 22 H 0.08 2.13 7.83 -52.48 -0.41 1.72 16 23 C -0.01 -0.23 5.50 -17.43 -0.10 -0.32 16 24 N -0.92 -27.31 11.39 55.49 0.63 -26.68 16 25 Si 0.91 22.18 29.55 -169.99 -5.02 17.16 16 26 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 27 H -0.29 -7.08 7.11 56.52 0.40 -6.67 16 28 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 29 C 0.13 2.49 8.38 -2.98 -0.02 2.47 16 30 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 31 H 0.07 1.03 8.14 -51.93 -0.42 0.60 16 32 H 0.05 0.77 8.14 -51.93 -0.42 0.34 16 33 H 0.40 4.14 7.70 -40.82 -0.31 3.83 16 34 H 0.14 1.02 7.53 -52.48 -0.40 0.63 16 35 H 0.14 0.58 8.06 -52.48 -0.42 0.15 16 36 H 0.13 0.50 8.06 -52.49 -0.42 0.07 16 37 H 0.13 0.93 8.06 -52.48 -0.42 0.51 16 38 H 0.15 1.89 8.06 -52.49 -0.42 1.47 16 39 H 0.14 1.53 8.06 -52.49 -0.42 1.11 16 40 H 0.14 1.38 8.06 -52.49 -0.42 0.96 16 41 H 0.16 1.52 8.06 -52.49 -0.42 1.09 16 42 H 0.09 1.50 8.14 -51.93 -0.42 1.07 16 43 H 0.03 0.67 8.03 -51.93 -0.42 0.25 16 44 H 0.08 1.91 7.17 -51.93 -0.37 1.54 16 45 H 0.25 7.30 8.31 -40.82 -0.34 6.96 16 46 H 0.04 0.73 8.14 -51.93 -0.42 0.30 16 47 H 0.03 0.63 8.10 -51.93 -0.42 0.21 16 LS Contribution 392.30 15.07 5.91 5.91 Total: -1.00 -34.62 392.30 -10.71 -45.33 By element: Atomic # 1 Polarization: 11.69 SS G_CDS: -6.93 Total: 4.76 kcal Atomic # 6 Polarization: -2.04 SS G_CDS: -4.33 Total: -6.37 kcal Atomic # 7 Polarization: -57.21 SS G_CDS: -0.42 Total: -57.63 kcal Atomic # 8 Polarization: -9.24 SS G_CDS: 0.08 Total: -9.16 kcal Atomic # 14 Polarization: 22.18 SS G_CDS: -5.02 Total: 17.16 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -34.62 -10.71 -45.33 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000970364786.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 154.063 kcal (2) G-P(sol) polarization free energy of solvation -34.618 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 119.445 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.708 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.326 kcal (6) G-S(sol) free energy of system = (1) + (5) 108.737 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds