Wall clock time and date at job start Tue Mar 31 2020 22:52:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09003 * 109.47045 * 2 1 4 4 N 1.46500 * 109.47273 * 240.00369 * 2 1 3 5 5 C 1.34770 * 120.00327 * 84.99744 * 4 2 1 6 6 O 1.21585 * 120.00294 * 0.02562 * 5 4 2 7 7 C 1.47576 * 120.00344 * 180.02562 * 5 4 2 8 8 C 1.39658 * 120.19124 * 325.99986 * 7 5 4 9 9 C 1.37830 * 119.91921 * 179.97438 * 8 7 5 10 10 C 1.38524 * 120.31230 * 0.02562 * 9 8 7 11 11 C 1.38078 * 120.38951 * 359.97438 * 10 9 8 12 12 C 1.38759 * 120.07572 * 0.28013 * 11 10 9 13 13 N 1.39667 * 120.15597 * 179.74493 * 12 11 10 14 14 C 1.36654 * 125.67806 * 123.13785 * 13 12 11 15 15 C 1.34809 * 108.18953 * 179.86468 * 14 13 12 16 16 C 1.40993 * 107.48896 * 0.39255 * 15 14 13 17 17 C 1.34816 * 107.48545 * 359.75377 * 16 15 14 18 18 C 1.52996 * 109.47561 * 119.99892 * 2 1 3 19 19 C 1.53948 * 113.74351 * 281.83994 * 18 2 1 20 20 N 1.47809 * 86.03454 * 222.08066 * 19 18 2 21 21 C 1.36939 * 134.45261 * 204.64036 * 20 19 18 22 22 H 1.08004 * 119.99812 * 179.86427 * 21 20 19 23 23 C 1.38807 * 120.00456 * 359.86895 * 21 20 19 24 24 N 1.31625 * 119.99640 * 359.97438 * 23 21 20 25 25 Si 1.86803 * 120.00483 * 180.02562 * 23 21 20 26 26 H 1.48493 * 109.47247 * 89.99943 * 25 23 21 27 27 H 1.48496 * 109.47027 * 209.99996 * 25 23 21 28 28 H 1.48498 * 109.46847 * 329.99735 * 25 23 21 29 29 C 1.47573 * 91.05301 * 24.54435 * 20 19 18 30 30 H 1.09006 * 109.46824 * 184.97964 * 1 2 3 31 31 H 1.08997 * 109.47368 * 304.97697 * 1 2 3 32 32 H 1.09003 * 109.47540 * 64.98095 * 1 2 3 33 33 H 0.97000 * 119.99515 * 264.99550 * 4 2 1 34 34 H 1.08003 * 120.04078 * 359.97352 * 8 7 5 35 35 H 1.08003 * 119.84394 * 180.02562 * 9 8 7 36 36 H 1.08002 * 119.80817 * 179.97438 * 10 9 8 37 37 H 1.08003 * 119.95861 * 179.97438 * 11 10 9 38 38 H 1.07999 * 125.90345 * 359.97438 * 14 13 12 39 39 H 1.08002 * 126.25472 * 180.10395 * 15 14 13 40 40 H 1.07995 * 126.25742 * 179.71955 * 16 15 14 41 41 H 1.07995 * 125.90467 * 179.97438 * 17 16 15 42 42 H 1.09004 * 112.94113 * 53.42118 * 18 2 1 43 43 H 1.09005 * 113.76602 * 336.34475 * 19 18 2 44 44 H 1.08997 * 113.77186 * 107.74192 * 19 18 2 45 45 H 0.97007 * 119.99763 * 180.02562 * 24 23 21 46 46 H 1.08997 * 113.77082 * 221.15085 * 29 20 19 47 47 H 1.09005 * 113.87250 * 89.76914 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6905 -1.1962 5 6 2.1470 -0.0182 -2.3571 6 8 1.8583 1.1616 -2.4117 7 6 2.6384 -0.7139 -3.5622 8 6 3.5885 -1.7312 -3.4476 9 6 4.0431 -2.3776 -4.5768 10 6 3.5626 -2.0229 -5.8267 11 6 2.6233 -1.0191 -5.9549 12 6 2.1583 -0.3540 -4.8293 13 7 1.2120 0.6653 -4.9575 14 6 -0.0079 0.7021 -4.3429 15 6 -0.6296 1.8407 -4.7096 16 6 0.2311 2.5292 -5.5888 17 6 1.3497 1.7888 -5.7231 18 6 2.0400 -0.7212 1.2492 19 6 1.9741 0.1329 2.5284 20 7 3.3096 -0.4177 2.8417 21 6 4.0191 -0.6141 3.9964 22 1 5.0064 -1.0500 3.9560 23 6 3.4694 -0.2532 5.2188 24 7 2.2663 0.2785 5.2680 25 14 4.4375 -0.5205 6.7938 26 1 5.2523 0.6864 7.0849 27 1 3.4976 -0.7659 7.9170 28 1 5.3322 -1.6945 6.6316 29 6 3.5700 -0.6727 1.4117 30 1 -0.3633 -1.0239 0.0892 31 1 -0.3634 0.5891 0.8420 32 1 -0.3634 0.4346 -0.9312 33 1 2.2491 -1.6317 -1.1526 34 1 3.9664 -2.0110 -2.4754 35 1 4.7775 -3.1644 -4.4868 36 1 3.9249 -2.5346 -6.7062 37 1 2.2537 -0.7479 -6.9328 38 1 -0.4046 -0.0499 -3.6770 39 1 -1.6100 2.1640 -4.3919 40 1 0.0306 3.4762 -6.0677 41 1 2.2063 2.0400 -6.3310 42 1 1.6177 -1.7193 1.3658 43 1 1.9746 1.2065 2.3402 44 1 1.1951 -0.1779 3.2245 45 1 1.8822 0.5311 6.1223 46 1 4.0629 -1.6254 1.2180 47 1 4.0406 0.1627 0.8932 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000970364786.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:52:06 Heat of formation + Delta-G solvation = 89.197296 kcal Electronic energy + Delta-G solvation = -29058.987859 eV Core-core repulsion = 25209.087973 eV Total energy + Delta-G solvation = -3849.899886 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -42.58847 -41.04686 -39.92956 -39.09881 -36.22425 -34.24110 -34.02757 -32.95710 -31.23241 -29.79914 -29.70955 -29.32731 -26.65637 -25.86843 -24.98758 -23.95925 -22.88884 -21.62710 -21.22920 -21.10746 -20.70207 -19.35340 -18.79219 -18.40817 -17.49260 -16.89777 -16.44011 -16.41205 -16.02602 -15.77733 -15.62130 -15.26923 -15.07982 -14.79096 -14.64258 -14.44722 -14.38669 -14.07002 -13.61071 -13.35706 -13.28435 -13.19041 -13.10092 -12.99299 -12.98143 -12.92118 -12.69866 -12.42091 -12.36281 -12.04346 -11.82182 -11.61216 -11.24845 -10.93935 -10.88029 -10.37960 -10.19936 -10.01024 -9.27830 -9.05961 -8.93960 -7.91742 -5.25621 -0.29236 0.11628 1.40078 1.44455 1.46772 1.55274 1.75169 1.97786 2.10867 2.15357 2.46240 2.65231 3.28078 3.37171 3.53953 3.73208 3.79817 3.94372 3.98354 4.04902 4.23010 4.27469 4.28841 4.31183 4.41982 4.53528 4.55404 4.62772 4.74233 4.76139 4.80198 4.83868 4.86525 4.93323 5.05502 5.12153 5.23072 5.23712 5.27294 5.34602 5.36770 5.38933 5.48532 5.52666 5.62514 5.73530 5.92259 6.04799 6.27147 6.52617 6.60177 6.90329 7.20860 7.59440 8.54879 9.25238 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.017530 B = 0.002605 C = 0.002351 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1596.916986 B =10745.534641 C =11905.326220 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.166 3.834 3 H 0.057 0.943 4 N -0.700 5.700 5 C 0.549 3.451 6 O -0.559 6.559 7 C -0.151 4.151 8 C -0.076 4.076 9 C -0.113 4.113 10 C -0.072 4.072 11 C -0.126 4.126 12 C 0.141 3.859 13 N -0.402 5.402 14 C -0.001 4.001 15 C -0.214 4.214 16 C -0.209 4.209 17 C -0.015 4.015 18 C -0.108 4.108 19 C 0.171 3.829 20 N -0.643 5.643 21 C -0.237 4.237 22 H 0.085 0.915 23 C -0.068 4.068 24 N -0.954 5.954 25 Si 0.979 3.021 26 H -0.290 1.290 27 H -0.293 1.293 28 H -0.265 1.265 29 C 0.128 3.872 30 H 0.074 0.926 31 H 0.061 0.939 32 H 0.050 0.950 33 H 0.413 0.587 34 H 0.152 0.848 35 H 0.169 0.831 36 H 0.171 0.829 37 H 0.147 0.853 38 H 0.151 0.849 39 H 0.142 0.858 40 H 0.151 0.849 41 H 0.179 0.821 42 H 0.107 0.893 43 H 0.008 0.992 44 H 0.047 0.953 45 H 0.249 0.751 46 H 0.066 0.934 47 H 0.029 0.971 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.089 -8.273 -27.366 28.589 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.061 3.939 3 H 0.075 0.925 4 N -0.351 5.351 5 C 0.337 3.663 6 O -0.438 6.438 7 C -0.156 4.156 8 C -0.095 4.095 9 C -0.130 4.130 10 C -0.090 4.090 11 C -0.145 4.145 12 C 0.050 3.950 13 N -0.075 5.075 14 C -0.128 4.128 15 C -0.238 4.238 16 C -0.233 4.233 17 C -0.142 4.142 18 C -0.128 4.128 19 C 0.045 3.955 20 N -0.369 5.369 21 C -0.365 4.365 22 H 0.103 0.897 23 C -0.261 4.261 24 N -0.602 5.602 25 Si 0.807 3.193 26 H -0.217 1.217 27 H -0.219 1.219 28 H -0.189 1.189 29 C 0.004 3.996 30 H 0.093 0.907 31 H 0.080 0.920 32 H 0.070 0.930 33 H 0.250 0.750 34 H 0.169 0.831 35 H 0.186 0.814 36 H 0.189 0.811 37 H 0.165 0.835 38 H 0.168 0.832 39 H 0.160 0.840 40 H 0.169 0.831 41 H 0.196 0.804 42 H 0.125 0.875 43 H 0.026 0.974 44 H 0.065 0.935 45 H 0.058 0.942 46 H 0.084 0.916 47 H 0.047 0.953 Dipole moment (debyes) X Y Z Total from point charges -0.014 -7.670 -27.011 28.079 hybrid contribution 0.269 0.384 1.552 1.621 sum 0.255 -7.286 -25.459 26.482 Atomic orbital electron populations 1.22025 0.94138 1.02957 1.01697 1.20719 0.94632 0.95705 0.82875 0.92477 1.45841 1.66356 1.14444 1.08477 1.18502 0.77694 0.86447 0.83699 1.90858 1.50791 1.16895 1.85274 1.20050 1.02436 1.01239 0.91846 1.21581 0.93975 0.92257 1.01655 1.21647 1.00007 1.00086 0.91293 1.21687 0.93436 0.94410 0.99468 1.21369 0.99209 0.96585 0.97299 1.17985 0.92573 0.90712 0.93728 1.41313 1.12706 1.16418 1.37031 1.21764 0.86426 1.01773 1.02878 1.21095 1.01910 0.96302 1.04461 1.21151 0.95313 1.01950 1.04887 1.22203 1.01795 0.88419 1.01736 1.23457 0.96141 1.00351 0.92829 1.22117 0.88317 0.93573 0.91534 1.46419 1.17230 1.72074 1.01219 1.19449 0.98814 1.34131 0.84127 0.89748 1.25655 0.98144 1.01568 1.00764 1.70009 1.16915 1.48675 1.24651 0.85069 0.77402 0.77948 0.78863 1.21684 1.21938 1.18945 1.22663 0.94697 0.98497 0.83781 0.90715 0.91995 0.93047 0.75045 0.83060 0.81385 0.81130 0.83480 0.83161 0.84043 0.83134 0.80353 0.87455 0.97417 0.93480 0.94246 0.91589 0.95304 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.21 9.43 71.98 0.68 -3.53 16 2 C 0.17 5.09 2.29 44.99 0.10 5.19 16 3 H 0.06 2.15 7.48 -2.39 -0.02 2.13 16 4 N -0.70 -17.34 4.85 -445.68 -2.16 -19.50 16 5 C 0.55 15.53 6.66 86.71 0.58 16.10 16 6 O -0.56 -20.81 14.23 -3.98 -0.06 -20.86 16 7 C -0.15 -3.31 5.80 -19.99 -0.12 -3.43 16 8 C -0.08 -1.09 9.32 22.52 0.21 -0.88 16 9 C -0.11 -1.00 10.02 22.24 0.22 -0.78 16 10 C -0.07 -0.60 10.03 22.30 0.22 -0.38 16 11 C -0.13 -1.76 9.76 22.36 0.22 -1.54 16 12 C 0.14 3.05 5.84 38.49 0.22 3.28 16 13 N -0.40 -10.27 2.05 -345.93 -0.71 -10.98 16 14 C 0.00 -0.02 8.89 83.15 0.74 0.72 16 15 C -0.21 -5.80 10.86 22.16 0.24 -5.56 16 16 C -0.21 -5.25 10.86 22.16 0.24 -5.01 16 17 C -0.01 -0.36 11.21 83.16 0.93 0.58 16 18 C -0.11 -3.74 3.35 -10.14 -0.03 -3.78 16 19 C 0.17 8.14 7.03 86.44 0.61 8.75 16 20 N -0.64 -33.11 3.70 -716.20 -2.65 -35.76 16 21 C -0.24 -13.38 10.70 84.03 0.90 -12.48 16 22 H 0.08 4.52 7.83 -2.91 -0.02 4.50 16 23 C -0.07 -3.93 5.50 84.86 0.47 -3.47 16 24 N -0.95 -58.19 11.39 21.65 0.25 -57.94 16 25 Si 0.98 45.95 29.55 68.60 2.03 47.98 16 26 H -0.29 -13.51 7.11 99.48 0.71 -12.81 16 27 H -0.29 -13.77 7.11 99.48 0.71 -13.07 16 28 H -0.26 -11.60 7.11 99.48 0.71 -10.90 16 29 C 0.13 4.98 8.38 86.48 0.72 5.71 16 30 H 0.07 1.79 8.14 -2.38 -0.02 1.77 16 31 H 0.06 1.85 8.14 -2.39 -0.02 1.83 16 32 H 0.05 1.48 8.14 -2.39 -0.02 1.46 16 33 H 0.41 7.67 7.70 -92.71 -0.71 6.96 16 34 H 0.15 1.71 7.53 -2.91 -0.02 1.69 16 35 H 0.17 0.44 8.06 -2.91 -0.02 0.41 16 36 H 0.17 0.24 8.06 -2.91 -0.02 0.22 16 37 H 0.15 1.63 8.06 -2.91 -0.02 1.61 16 38 H 0.15 3.95 8.06 -2.91 -0.02 3.93 16 39 H 0.14 3.41 8.06 -2.91 -0.02 3.38 16 40 H 0.15 3.09 8.06 -2.91 -0.02 3.07 16 41 H 0.18 3.28 8.06 -2.91 -0.02 3.26 16 42 H 0.11 3.40 8.14 -2.39 -0.02 3.38 16 43 H 0.01 0.41 8.03 -2.38 -0.02 0.39 16 44 H 0.05 2.50 7.17 -2.39 -0.02 2.48 16 45 H 0.25 14.74 8.31 -92.70 -0.77 13.97 16 46 H 0.07 2.24 8.14 -2.39 -0.02 2.22 16 47 H 0.03 1.16 8.10 -2.38 -0.02 1.14 16 Total: -1.00 -78.65 392.30 4.11 -74.54 By element: Atomic # 1 Polarization: 22.76 SS G_CDS: 0.26 Total: 23.02 kcal Atomic # 6 Polarization: -7.65 SS G_CDS: 7.16 Total: -0.49 kcal Atomic # 7 Polarization: -118.91 SS G_CDS: -5.28 Total: -124.19 kcal Atomic # 8 Polarization: -20.81 SS G_CDS: -0.06 Total: -20.86 kcal Atomic # 14 Polarization: 45.95 SS G_CDS: 2.03 Total: 47.98 kcal Total: -78.65 4.11 -74.54 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000970364786.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 163.739 kcal (2) G-P(sol) polarization free energy of solvation -78.653 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 85.086 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.111 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.542 kcal (6) G-S(sol) free energy of system = (1) + (5) 89.197 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds