Wall clock time and date at job start Tue Mar 31 2020 22:52:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08996 * 109.47066 * 2 1 4 4 N 1.46505 * 109.46878 * 119.99448 * 2 1 3 5 5 C 1.34774 * 120.00411 * 275.00283 * 4 2 1 6 6 O 1.21581 * 119.99543 * 359.97438 * 5 4 2 7 7 C 1.47578 * 120.00133 * 179.97438 * 5 4 2 8 8 C 1.39654 * 120.18962 * 6.50567 * 7 5 4 9 9 C 1.37831 * 119.91359 * 179.97438 * 8 7 5 10 10 C 1.38537 * 120.31114 * 359.97438 * 9 8 7 11 11 C 1.38064 * 120.39098 * 0.02562 * 10 9 8 12 12 C 1.38767 * 120.07533 * 359.69489 * 11 10 9 13 13 N 1.39659 * 120.15187 * 180.27705 * 12 11 10 14 14 C 1.36658 * 125.68208 * 57.59025 * 13 12 11 15 15 C 1.34804 * 108.19198 * 179.86080 * 14 13 12 16 16 C 1.40989 * 107.49288 * 0.38896 * 15 14 13 17 17 C 1.34810 * 107.48083 * 359.75705 * 16 15 14 18 18 C 1.53000 * 109.47358 * 239.99586 * 2 1 3 19 19 C 1.53497 * 114.20616 * 174.97685 * 18 2 1 20 20 N 1.47063 * 87.98440 * 220.34812 * 19 18 2 21 21 C 1.36937 * 136.05475 * 207.08576 * 20 19 18 22 22 H 1.08000 * 120.00510 * 5.13280 * 21 20 19 23 23 C 1.38815 * 119.99890 * 185.12875 * 21 20 19 24 24 N 1.31619 * 119.99940 * 5.11416 * 23 21 20 25 25 Si 1.86799 * 120.00180 * 185.11166 * 23 21 20 26 26 H 1.48501 * 109.47397 * 265.00446 * 25 23 21 27 27 H 1.48501 * 109.46812 * 25.00181 * 25 23 21 28 28 H 1.48496 * 109.47390 * 144.99930 * 25 23 21 29 29 C 1.47066 * 87.88703 * 27.34047 * 20 19 18 30 30 H 1.09006 * 109.47148 * 64.99051 * 1 2 3 31 31 H 1.08999 * 109.47569 * 184.99201 * 1 2 3 32 32 H 1.08998 * 109.47757 * 304.99622 * 1 2 3 33 33 H 0.97000 * 119.99723 * 95.00246 * 4 2 1 34 34 H 1.08003 * 120.04389 * 359.97438 * 8 7 5 35 35 H 1.07999 * 119.84132 * 179.97438 * 9 8 7 36 36 H 1.08000 * 119.80333 * 179.97438 * 10 9 8 37 37 H 1.07997 * 119.96142 * 179.97438 * 11 10 9 38 38 H 1.08003 * 125.90009 * 0.02562 * 14 13 12 39 39 H 1.08008 * 126.25196 * 180.14008 * 15 14 13 40 40 H 1.08001 * 126.26156 * 179.73706 * 16 15 14 41 41 H 1.08007 * 125.90249 * 180.02562 * 17 16 15 42 42 H 1.09002 * 113.41302 * 308.17606 * 18 2 1 43 43 H 1.08999 * 113.46910 * 105.56342 * 19 18 2 44 44 H 1.09008 * 113.51994 * 335.13659 * 19 18 2 45 45 H 0.97004 * 119.99741 * 180.02562 * 24 23 21 46 46 H 1.09006 * 113.46496 * 87.43710 * 29 20 19 47 47 H 1.08995 * 113.46933 * 217.87686 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0182 -0.6905 1.1963 5 6 2.1469 -0.0182 2.3572 6 8 1.8582 1.1616 2.4116 7 6 2.6382 -0.7140 3.5624 8 6 3.0989 -2.0295 3.4751 9 6 3.5570 -2.6737 4.6042 10 6 3.5635 -2.0222 5.8268 11 6 3.1110 -0.7217 5.9276 12 6 2.6517 -0.0558 4.8002 13 7 2.1990 1.2617 4.8993 14 6 2.9240 2.3204 5.3696 15 6 2.1494 3.4219 5.3070 16 6 0.8981 3.0311 4.7882 17 6 0.9554 1.7059 4.5476 18 6 2.0400 -0.7213 -1.2492 19 6 3.5647 -0.6794 -1.4217 20 7 3.3440 -0.4666 -2.8600 21 6 4.0370 -0.7244 -4.0126 22 1 4.9640 -1.2772 -3.9732 23 6 3.5480 -0.2753 -5.2317 24 7 2.4732 0.4834 -5.2704 25 14 4.4154 -0.7476 -6.8172 26 1 5.3630 0.3288 -7.2028 27 1 5.1622 -2.0150 -6.6141 28 1 3.4108 -0.9323 -7.8950 29 6 2.0544 0.1508 -2.5154 30 1 -0.3634 0.4345 -0.9314 31 1 -0.3634 -1.0237 0.0894 32 1 -0.3634 0.5894 0.8418 33 1 2.2489 -1.6317 1.1528 34 1 3.0961 -2.5413 2.5241 35 1 3.9126 -3.6911 4.5354 36 1 3.9239 -2.5349 6.7063 37 1 3.1188 -0.2206 6.8843 38 1 3.9425 2.2817 5.7269 39 1 2.4340 4.4205 5.6042 40 1 0.0487 3.6754 4.6154 41 1 0.1567 1.0999 4.1458 42 1 1.6015 -1.7095 -1.3881 43 1 4.0536 -1.6263 -1.1929 44 1 4.0356 0.1688 -0.9246 45 1 2.1313 0.7969 -6.1223 46 1 2.1263 1.2182 -2.3064 47 1 1.2568 -0.0889 -3.2184 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000970364788.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:52:11 Heat of formation + Delta-G solvation = 118.811295 kcal Electronic energy + Delta-G solvation = -29042.746195 eV Core-core repulsion = 25194.130468 eV Total energy + Delta-G solvation = -3848.615727 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -41.67851 -39.93051 -38.83828 -37.95986 -34.94533 -33.22774 -32.48127 -31.85012 -30.12070 -28.96542 -28.66960 -27.55427 -24.95657 -24.33222 -23.80471 -23.20971 -21.57092 -20.52336 -20.14533 -20.06358 -19.37695 -18.45426 -17.47775 -16.82885 -16.29713 -15.58603 -15.45716 -15.12770 -14.88262 -14.74000 -14.29144 -14.04836 -13.85950 -13.64142 -13.53474 -13.38704 -13.26407 -12.74341 -12.35571 -12.32924 -12.22232 -12.09712 -11.91980 -11.81394 -11.65241 -11.40104 -11.25300 -10.92948 -10.74175 -10.39214 -10.11817 -9.88004 -9.73918 -9.62336 -9.47136 -9.24305 -8.90188 -8.80177 -8.36911 -7.90431 -6.90741 -5.80444 -3.11711 0.37180 0.73737 2.36851 2.73223 2.91496 3.13379 3.24834 3.37490 3.42160 3.44623 3.47633 4.32990 4.39508 4.43299 4.54884 4.83769 4.86812 4.88977 5.09614 5.17558 5.26967 5.32190 5.36954 5.40528 5.52554 5.56272 5.64019 5.70903 5.77966 5.79707 5.83678 5.92584 5.96103 6.05641 6.24446 6.28397 6.34846 6.38389 6.39444 6.40613 6.55148 6.61962 6.76208 7.08717 7.16512 7.29767 7.31266 7.49911 7.54492 7.57305 7.94319 8.25313 9.01114 9.67604 10.61908 11.38175 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.016185 B = 0.002606 C = 0.002406 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1729.545489 B =10743.166895 C =11635.506952 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.156 3.844 3 H 0.089 0.911 4 N -0.712 5.712 5 C 0.545 3.455 6 O -0.512 6.512 7 C -0.132 4.132 8 C -0.073 4.073 9 C -0.124 4.124 10 C -0.083 4.083 11 C -0.127 4.127 12 C 0.177 3.823 13 N -0.404 5.404 14 C -0.019 4.019 15 C -0.187 4.187 16 C -0.209 4.209 17 C 0.055 3.945 18 C -0.155 4.155 19 C 0.125 3.875 20 N -0.610 5.610 21 C -0.221 4.221 22 H 0.081 0.919 23 C -0.007 4.007 24 N -0.919 5.919 25 Si 0.913 3.087 26 H -0.289 1.289 27 H -0.280 1.280 28 H -0.289 1.289 29 C 0.175 3.825 30 H 0.071 0.929 31 H 0.052 0.948 32 H 0.054 0.946 33 H 0.396 0.604 34 H 0.137 0.863 35 H 0.135 0.865 36 H 0.135 0.865 37 H 0.135 0.865 38 H 0.155 0.845 39 H 0.133 0.867 40 H 0.133 0.867 41 H 0.150 0.850 42 H 0.092 0.908 43 H 0.036 0.964 44 H 0.030 0.970 45 H 0.254 0.746 46 H 0.030 0.970 47 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.973 -5.536 25.258 25.932 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.052 3.948 3 H 0.107 0.893 4 N -0.363 5.363 5 C 0.331 3.669 6 O -0.388 6.388 7 C -0.137 4.137 8 C -0.092 4.092 9 C -0.142 4.142 10 C -0.102 4.102 11 C -0.147 4.147 12 C 0.085 3.915 13 N -0.079 5.079 14 C -0.145 4.145 15 C -0.212 4.212 16 C -0.232 4.232 17 C -0.072 4.072 18 C -0.175 4.175 19 C -0.002 4.002 20 N -0.335 5.335 21 C -0.348 4.348 22 H 0.099 0.901 23 C -0.204 4.204 24 N -0.565 5.565 25 Si 0.743 3.257 26 H -0.216 1.216 27 H -0.205 1.205 28 H -0.216 1.216 29 C 0.049 3.951 30 H 0.090 0.910 31 H 0.072 0.928 32 H 0.073 0.927 33 H 0.231 0.769 34 H 0.154 0.846 35 H 0.153 0.847 36 H 0.153 0.847 37 H 0.153 0.847 38 H 0.173 0.827 39 H 0.151 0.849 40 H 0.151 0.849 41 H 0.167 0.833 42 H 0.110 0.890 43 H 0.054 0.946 44 H 0.048 0.952 45 H 0.064 0.936 46 H 0.047 0.953 47 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -2.016 -4.945 24.844 25.411 hybrid contribution 0.740 -0.556 -1.059 1.406 sum -1.276 -5.501 23.784 24.446 Atomic orbital electron populations 1.22102 0.95303 1.01607 1.02509 1.21035 0.93794 0.97409 0.82566 0.89297 1.46070 1.66681 1.13896 1.09610 1.18089 0.78815 0.86941 0.83063 1.90889 1.49074 1.14633 1.84205 1.20173 1.04750 0.95630 0.93128 1.21339 0.95685 0.92606 0.99550 1.21221 1.00000 1.00720 0.92298 1.21239 0.96957 0.93755 0.98250 1.21173 1.00968 0.95139 0.97391 1.17656 0.97547 0.83931 0.92400 1.41164 1.11789 1.04323 1.50605 1.21707 0.98114 0.86258 1.08409 1.20824 0.94941 0.97606 1.07841 1.20754 0.99043 0.94116 1.09310 1.21484 0.86830 0.95619 1.03314 1.23722 0.98048 1.00883 0.94883 1.22357 0.92849 0.97752 0.87195 1.45647 1.19409 1.69034 0.99413 1.18943 1.04284 1.29066 0.82490 0.90131 1.24828 0.98466 0.99433 0.97681 1.69841 1.24179 1.37862 1.24647 0.86094 0.78448 0.78005 0.83171 1.21596 1.20535 1.21551 1.21960 0.90200 0.93564 0.89407 0.90984 0.92844 0.92734 0.76937 0.84564 0.84700 0.84739 0.84689 0.82704 0.84891 0.84939 0.83255 0.88965 0.94578 0.95227 0.93575 0.95266 0.91689 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.16 9.48 37.15 0.35 -1.80 16 2 C 0.16 2.37 2.34 -67.93 -0.16 2.22 16 3 H 0.09 1.60 7.42 -51.93 -0.39 1.21 16 4 N -0.71 -9.10 4.91 -54.84 -0.27 -9.37 16 5 C 0.55 7.65 7.55 -12.45 -0.09 7.55 16 6 O -0.51 -8.86 12.24 5.29 0.06 -8.79 16 7 C -0.13 -1.52 5.87 -104.82 -0.62 -2.13 16 8 C -0.07 -0.61 9.52 -39.20 -0.37 -0.98 16 9 C -0.12 -0.81 10.02 -39.62 -0.40 -1.21 16 10 C -0.08 -0.53 10.03 -39.53 -0.40 -0.93 16 11 C -0.13 -1.07 9.78 -39.45 -0.39 -1.46 16 12 C 0.18 2.03 5.85 -83.36 -0.49 1.54 16 13 N -0.40 -5.30 2.11 -60.69 -0.13 -5.42 16 14 C -0.02 -0.25 11.23 -16.62 -0.19 -0.43 16 15 C -0.19 -2.42 10.86 -39.76 -0.43 -2.86 16 16 C -0.21 -2.85 10.86 -39.76 -0.43 -3.28 16 17 C 0.05 0.76 7.99 -16.62 -0.13 0.63 16 18 C -0.16 -2.73 3.52 -89.97 -0.32 -3.05 16 19 C 0.12 2.53 8.13 -8.51 -0.07 2.46 16 20 N -0.61 -15.71 3.77 -184.60 -0.70 -16.41 16 21 C -0.22 -6.23 10.74 -15.06 -0.16 -6.39 16 22 H 0.08 2.19 7.83 -52.49 -0.41 1.78 16 23 C -0.01 -0.20 5.50 -17.43 -0.10 -0.30 16 24 N -0.92 -27.43 11.73 55.49 0.65 -26.78 16 25 Si 0.91 22.15 29.56 -169.99 -5.02 17.13 16 26 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 27 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 28 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 29 C 0.18 4.06 6.83 -8.37 -0.06 4.00 16 30 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 31 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 32 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 33 H 0.40 4.08 6.68 -40.82 -0.27 3.80 16 34 H 0.14 0.90 6.46 -52.48 -0.34 0.56 16 35 H 0.14 0.55 8.06 -52.49 -0.42 0.12 16 36 H 0.13 0.49 8.06 -52.49 -0.42 0.07 16 37 H 0.14 0.95 8.06 -52.49 -0.42 0.53 16 38 H 0.16 1.56 8.06 -52.48 -0.42 1.14 16 39 H 0.13 1.44 8.06 -52.48 -0.42 1.02 16 40 H 0.13 1.60 8.06 -52.49 -0.42 1.18 16 41 H 0.15 1.97 7.95 -52.48 -0.42 1.55 16 42 H 0.09 1.55 8.14 -51.93 -0.42 1.13 16 43 H 0.04 0.68 8.14 -51.93 -0.42 0.25 16 44 H 0.03 0.63 8.11 -51.92 -0.42 0.21 16 45 H 0.25 7.34 8.31 -40.82 -0.34 7.00 16 46 H 0.03 0.71 8.00 -51.93 -0.42 0.30 16 47 H 0.06 1.65 7.47 -51.93 -0.39 1.26 16 LS Contribution 389.00 15.07 5.86 5.86 Total: -1.00 -34.54 389.00 -10.81 -45.35 By element: Atomic # 1 Polarization: 11.69 SS G_CDS: -6.84 Total: 4.86 kcal Atomic # 6 Polarization: -1.99 SS G_CDS: -4.44 Total: -6.43 kcal Atomic # 7 Polarization: -57.54 SS G_CDS: -0.44 Total: -57.98 kcal Atomic # 8 Polarization: -8.86 SS G_CDS: 0.06 Total: -8.79 kcal Atomic # 14 Polarization: 22.15 SS G_CDS: -5.02 Total: 17.13 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -34.54 -10.81 -45.35 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000970364788.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 164.166 kcal (2) G-P(sol) polarization free energy of solvation -34.540 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 129.626 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.815 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.355 kcal (6) G-S(sol) free energy of system = (1) + (5) 118.811 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds