Wall clock time and date at job start Tue Mar 31 2020 22:52:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08996 * 109.47066 * 2 1 4 4 N 1.46505 * 109.46878 * 119.99448 * 2 1 3 5 5 C 1.34774 * 120.00411 * 275.00283 * 4 2 1 6 6 O 1.21581 * 119.99543 * 359.97438 * 5 4 2 7 7 C 1.47578 * 120.00133 * 179.97438 * 5 4 2 8 8 C 1.39654 * 120.18962 * 6.50567 * 7 5 4 9 9 C 1.37831 * 119.91359 * 179.97438 * 8 7 5 10 10 C 1.38537 * 120.31114 * 359.97438 * 9 8 7 11 11 C 1.38064 * 120.39098 * 0.02562 * 10 9 8 12 12 C 1.38767 * 120.07533 * 359.69489 * 11 10 9 13 13 N 1.39659 * 120.15187 * 180.27705 * 12 11 10 14 14 C 1.36658 * 125.68208 * 57.59025 * 13 12 11 15 15 C 1.34804 * 108.19198 * 179.86080 * 14 13 12 16 16 C 1.40989 * 107.49288 * 0.38896 * 15 14 13 17 17 C 1.34810 * 107.48083 * 359.75705 * 16 15 14 18 18 C 1.53000 * 109.47358 * 239.99586 * 2 1 3 19 19 C 1.53497 * 114.20616 * 174.97685 * 18 2 1 20 20 N 1.47063 * 87.98440 * 220.34812 * 19 18 2 21 21 C 1.36937 * 136.05475 * 207.08576 * 20 19 18 22 22 H 1.08000 * 120.00510 * 5.13280 * 21 20 19 23 23 C 1.38815 * 119.99890 * 185.12875 * 21 20 19 24 24 N 1.31619 * 119.99940 * 5.11416 * 23 21 20 25 25 Si 1.86799 * 120.00180 * 185.11166 * 23 21 20 26 26 H 1.48501 * 109.47397 * 265.00446 * 25 23 21 27 27 H 1.48501 * 109.46812 * 25.00181 * 25 23 21 28 28 H 1.48496 * 109.47390 * 144.99930 * 25 23 21 29 29 C 1.47066 * 87.88703 * 27.34047 * 20 19 18 30 30 H 1.09006 * 109.47148 * 64.99051 * 1 2 3 31 31 H 1.08999 * 109.47569 * 184.99201 * 1 2 3 32 32 H 1.08998 * 109.47757 * 304.99622 * 1 2 3 33 33 H 0.97000 * 119.99723 * 95.00246 * 4 2 1 34 34 H 1.08003 * 120.04389 * 359.97438 * 8 7 5 35 35 H 1.07999 * 119.84132 * 179.97438 * 9 8 7 36 36 H 1.08000 * 119.80333 * 179.97438 * 10 9 8 37 37 H 1.07997 * 119.96142 * 179.97438 * 11 10 9 38 38 H 1.08003 * 125.90009 * 0.02562 * 14 13 12 39 39 H 1.08008 * 126.25196 * 180.14008 * 15 14 13 40 40 H 1.08001 * 126.26156 * 179.73706 * 16 15 14 41 41 H 1.08007 * 125.90249 * 180.02562 * 17 16 15 42 42 H 1.09002 * 113.41302 * 308.17606 * 18 2 1 43 43 H 1.08999 * 113.46910 * 105.56342 * 19 18 2 44 44 H 1.09008 * 113.51994 * 335.13659 * 19 18 2 45 45 H 0.97004 * 119.99741 * 180.02562 * 24 23 21 46 46 H 1.09006 * 113.46496 * 87.43710 * 29 20 19 47 47 H 1.08995 * 113.46933 * 217.87686 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0182 -0.6905 1.1963 5 6 2.1469 -0.0182 2.3572 6 8 1.8582 1.1616 2.4116 7 6 2.6382 -0.7140 3.5624 8 6 3.0989 -2.0295 3.4751 9 6 3.5570 -2.6737 4.6042 10 6 3.5635 -2.0222 5.8268 11 6 3.1110 -0.7217 5.9276 12 6 2.6517 -0.0558 4.8002 13 7 2.1990 1.2617 4.8993 14 6 2.9240 2.3204 5.3696 15 6 2.1494 3.4219 5.3070 16 6 0.8981 3.0311 4.7882 17 6 0.9554 1.7059 4.5476 18 6 2.0400 -0.7213 -1.2492 19 6 3.5647 -0.6794 -1.4217 20 7 3.3440 -0.4666 -2.8600 21 6 4.0370 -0.7244 -4.0126 22 1 4.9640 -1.2772 -3.9732 23 6 3.5480 -0.2753 -5.2317 24 7 2.4732 0.4834 -5.2704 25 14 4.4154 -0.7476 -6.8172 26 1 5.3630 0.3288 -7.2028 27 1 5.1622 -2.0150 -6.6141 28 1 3.4108 -0.9323 -7.8950 29 6 2.0544 0.1508 -2.5154 30 1 -0.3634 0.4345 -0.9314 31 1 -0.3634 -1.0237 0.0894 32 1 -0.3634 0.5894 0.8418 33 1 2.2489 -1.6317 1.1528 34 1 3.0961 -2.5413 2.5241 35 1 3.9126 -3.6911 4.5354 36 1 3.9239 -2.5349 6.7063 37 1 3.1188 -0.2206 6.8843 38 1 3.9425 2.2817 5.7269 39 1 2.4340 4.4205 5.6042 40 1 0.0487 3.6754 4.6154 41 1 0.1567 1.0999 4.1458 42 1 1.6015 -1.7095 -1.3881 43 1 4.0536 -1.6263 -1.1929 44 1 4.0356 0.1688 -0.9246 45 1 2.1313 0.7969 -6.1223 46 1 2.1263 1.2182 -2.3064 47 1 1.2568 -0.0889 -3.2184 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000970364788.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:52:10 Heat of formation + Delta-G solvation = 99.218472 kcal Electronic energy + Delta-G solvation = -29043.595804 eV Core-core repulsion = 25194.130468 eV Total energy + Delta-G solvation = -3849.465336 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -42.57103 -41.06794 -40.02724 -39.13097 -36.27919 -34.30715 -33.97198 -33.00308 -31.20266 -29.77823 -29.63881 -29.39104 -26.52043 -25.88853 -25.01717 -23.94947 -22.92929 -21.64859 -21.21883 -21.06577 -20.69447 -19.41558 -18.78324 -18.39084 -17.41492 -16.89359 -16.44370 -16.28114 -16.03749 -15.83838 -15.77671 -15.30274 -15.07294 -14.81392 -14.61069 -14.40146 -14.27688 -14.12133 -13.64219 -13.30786 -13.26537 -13.16653 -13.09052 -13.05369 -12.97278 -12.88867 -12.71839 -12.42368 -12.37301 -12.07338 -11.87454 -11.62620 -11.10520 -10.89575 -10.86932 -10.34931 -10.23108 -9.98261 -9.24974 -8.97744 -8.90160 -7.95491 -5.28709 -0.35425 0.12402 1.44293 1.45919 1.46363 1.55826 1.84884 2.02350 2.11356 2.23934 2.45029 2.71675 3.27381 3.39527 3.51728 3.70894 3.75412 3.95448 4.02684 4.05037 4.23047 4.28706 4.31504 4.33516 4.40019 4.51259 4.57108 4.66466 4.73623 4.76602 4.80479 4.83038 4.87989 4.91926 5.04479 5.13433 5.18644 5.23910 5.26543 5.36977 5.39592 5.43618 5.46475 5.50071 5.59179 5.73813 5.87702 6.10991 6.33077 6.54482 6.66231 6.86611 7.22713 7.55897 8.56825 9.23423 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.016185 B = 0.002606 C = 0.002406 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1729.545489 B =10743.166895 C =11635.506952 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.170 3.830 3 H 0.056 0.944 4 N -0.701 5.701 5 C 0.542 3.458 6 O -0.553 6.553 7 C -0.156 4.156 8 C -0.072 4.072 9 C -0.115 4.115 10 C -0.069 4.069 11 C -0.129 4.129 12 C 0.146 3.854 13 N -0.405 5.405 14 C -0.025 4.025 15 C -0.206 4.206 16 C -0.229 4.229 17 C 0.040 3.960 18 C -0.112 4.112 19 C 0.127 3.873 20 N -0.641 5.641 21 C -0.234 4.234 22 H 0.088 0.912 23 C -0.068 4.068 24 N -0.954 5.954 25 Si 0.982 3.018 26 H -0.289 1.289 27 H -0.263 1.263 28 H -0.292 1.292 29 C 0.170 3.830 30 H 0.062 0.938 31 H 0.076 0.924 32 H 0.050 0.950 33 H 0.411 0.589 34 H 0.155 0.845 35 H 0.170 0.830 36 H 0.171 0.829 37 H 0.146 0.854 38 H 0.178 0.822 39 H 0.148 0.852 40 H 0.137 0.863 41 H 0.146 0.854 42 H 0.113 0.887 43 H 0.062 0.938 44 H 0.023 0.977 45 H 0.249 0.751 46 H 0.007 0.993 47 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.436 -8.896 27.150 28.574 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.064 3.936 3 H 0.075 0.925 4 N -0.353 5.353 5 C 0.330 3.670 6 O -0.432 6.432 7 C -0.160 4.160 8 C -0.091 4.091 9 C -0.133 4.133 10 C -0.087 4.087 11 C -0.148 4.148 12 C 0.054 3.946 13 N -0.079 5.079 14 C -0.151 4.151 15 C -0.231 4.231 16 C -0.253 4.253 17 C -0.088 4.088 18 C -0.132 4.132 19 C 0.002 3.998 20 N -0.367 5.367 21 C -0.362 4.362 22 H 0.106 0.894 23 C -0.261 4.261 24 N -0.603 5.603 25 Si 0.810 3.190 26 H -0.217 1.217 27 H -0.187 1.187 28 H -0.219 1.219 29 C 0.043 3.957 30 H 0.081 0.919 31 H 0.095 0.905 32 H 0.069 0.931 33 H 0.249 0.751 34 H 0.172 0.828 35 H 0.187 0.813 36 H 0.188 0.812 37 H 0.164 0.836 38 H 0.195 0.805 39 H 0.166 0.834 40 H 0.155 0.845 41 H 0.164 0.836 42 H 0.131 0.869 43 H 0.080 0.920 44 H 0.041 0.959 45 H 0.058 0.942 46 H 0.024 0.976 47 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -0.455 -8.364 26.777 28.056 hybrid contribution 0.320 0.439 -1.547 1.640 sum -0.135 -7.925 25.229 26.445 Atomic orbital electron populations 1.22021 0.93920 1.02920 1.01910 1.20629 0.94701 0.95591 0.82661 0.92538 1.45814 1.66505 1.14458 1.08502 1.18564 0.77956 0.86578 0.83861 1.90874 1.50871 1.16552 1.84893 1.20042 1.07105 0.97064 0.91810 1.21605 0.94903 0.91273 1.01287 1.21662 0.98214 1.01970 0.91412 1.21704 0.94755 0.92647 0.99626 1.21387 1.00523 0.96053 0.96813 1.18040 0.99368 0.83539 0.93626 1.41290 1.11345 1.05314 1.49933 1.22141 0.98944 0.86168 1.07881 1.21110 0.94867 0.98678 1.08436 1.21008 0.99852 0.94504 1.09962 1.21527 0.87579 0.95824 1.03854 1.23347 0.96322 1.00425 0.93106 1.22460 0.94768 0.98462 0.84114 1.46066 1.20381 1.69182 1.01075 1.19392 1.04497 1.28519 0.83767 0.89444 1.25727 0.99445 0.99867 1.01077 1.70035 1.25896 1.39396 1.24957 0.85010 0.77173 0.78138 0.78695 1.21651 1.18709 1.21859 1.21896 0.88849 0.93280 0.91637 0.91855 0.90520 0.93092 0.75087 0.82794 0.81250 0.81156 0.83628 0.80518 0.83434 0.84467 0.83624 0.86850 0.91979 0.95944 0.94174 0.97561 0.94478 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.07 9.48 71.98 0.68 -3.39 16 2 C 0.17 5.15 2.34 44.99 0.11 5.25 16 3 H 0.06 2.13 7.42 -2.39 -0.02 2.11 16 4 N -0.70 -17.10 4.91 -445.67 -2.19 -19.28 16 5 C 0.54 15.12 7.55 86.71 0.65 15.77 16 6 O -0.55 -19.86 12.24 -3.97 -0.05 -19.91 16 7 C -0.16 -3.36 5.87 -20.00 -0.12 -3.48 16 8 C -0.07 -0.96 9.52 22.52 0.21 -0.75 16 9 C -0.11 -0.95 10.02 22.24 0.22 -0.72 16 10 C -0.07 -0.57 10.03 22.30 0.22 -0.35 16 11 C -0.13 -1.83 9.78 22.36 0.22 -1.61 16 12 C 0.15 3.19 5.85 38.50 0.23 3.42 16 13 N -0.40 -10.72 2.11 -345.92 -0.73 -11.45 16 14 C -0.03 -0.64 11.23 83.15 0.93 0.29 16 15 C -0.21 -5.49 10.86 22.16 0.24 -5.25 16 16 C -0.23 -6.61 10.86 22.16 0.24 -6.37 16 17 C 0.04 1.17 7.99 83.15 0.66 1.83 16 18 C -0.11 -3.87 3.52 -10.37 -0.04 -3.91 16 19 C 0.13 5.04 8.13 83.18 0.68 5.72 16 20 N -0.64 -33.35 3.77 -737.94 -2.78 -36.14 16 21 C -0.23 -13.26 10.74 84.03 0.90 -12.36 16 22 H 0.09 4.69 7.83 -2.91 -0.02 4.67 16 23 C -0.07 -3.93 5.50 84.86 0.47 -3.46 16 24 N -0.95 -58.71 11.73 21.65 0.25 -58.46 16 25 Si 0.98 45.88 29.56 68.60 2.03 47.91 16 26 H -0.29 -13.44 7.11 99.48 0.71 -12.73 16 27 H -0.26 -11.40 7.11 99.48 0.71 -10.70 16 28 H -0.29 -13.66 7.11 99.48 0.71 -12.95 16 29 C 0.17 8.15 6.83 83.27 0.57 8.72 16 30 H 0.06 1.83 8.14 -2.38 -0.02 1.81 16 31 H 0.08 1.73 8.14 -2.39 -0.02 1.71 16 32 H 0.05 1.44 8.14 -2.39 -0.02 1.42 16 33 H 0.41 7.35 6.68 -92.71 -0.62 6.73 16 34 H 0.15 1.40 6.46 -2.91 -0.02 1.38 16 35 H 0.17 0.29 8.06 -2.91 -0.02 0.27 16 36 H 0.17 0.23 8.06 -2.91 -0.02 0.20 16 37 H 0.15 1.70 8.06 -2.91 -0.02 1.67 16 38 H 0.18 3.43 8.06 -2.91 -0.02 3.40 16 39 H 0.15 3.27 8.06 -2.91 -0.02 3.24 16 40 H 0.14 3.58 8.06 -2.91 -0.02 3.55 16 41 H 0.15 4.13 7.95 -2.91 -0.02 4.11 16 42 H 0.11 3.52 8.14 -2.39 -0.02 3.50 16 43 H 0.06 2.16 8.14 -2.39 -0.02 2.14 16 44 H 0.02 0.95 8.11 -2.38 -0.02 0.93 16 45 H 0.25 14.86 8.31 -92.71 -0.77 14.09 16 46 H 0.01 0.34 8.00 -2.38 -0.02 0.32 16 47 H 0.04 1.96 7.47 -2.39 -0.02 1.94 16 Total: -1.00 -79.09 389.00 3.98 -75.11 By element: Atomic # 1 Polarization: 22.48 SS G_CDS: 0.35 Total: 22.84 kcal Atomic # 6 Polarization: -7.72 SS G_CDS: 7.09 Total: -0.63 kcal Atomic # 7 Polarization: -119.88 SS G_CDS: -5.44 Total: -125.32 kcal Atomic # 8 Polarization: -19.86 SS G_CDS: -0.05 Total: -19.91 kcal Atomic # 14 Polarization: 45.88 SS G_CDS: 2.03 Total: 47.91 kcal Total: -79.09 3.98 -75.11 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000970364788.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 174.328 kcal (2) G-P(sol) polarization free energy of solvation -79.087 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 95.241 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.978 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.109 kcal (6) G-S(sol) free energy of system = (1) + (5) 99.218 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds