Wall clock time and date at job start Tue Mar 31 2020 22:52:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08995 * 109.46502 * 2 1 4 4 N 1.46496 * 109.47421 * 239.99670 * 2 1 3 5 5 C 1.34780 * 119.99734 * 84.99427 * 4 2 1 6 6 O 1.21734 * 120.00179 * 0.02562 * 5 4 2 7 7 C 1.46396 * 119.99812 * 180.02562 * 5 4 2 8 8 N 1.37634 * 126.32898 * 0.02562 * 7 5 4 9 9 H 0.97000 * 125.54826 * 0.02562 * 8 7 5 10 10 C 1.35633 * 108.89719 * 179.97438 * 8 7 5 11 11 C 1.35124 * 109.22606 * 0.02562 * 10 8 7 12 12 C 1.39102 * 126.32503 * 179.72078 * 7 5 4 13 13 C 1.48176 * 126.63316 * 0.03050 * 12 7 5 14 14 C 1.39450 * 120.13094 * 309.72730 * 13 12 7 15 15 C 1.37987 * 119.86388 * 179.79111 * 14 13 12 16 16 C 1.38343 * 120.13268 * 0.47019 * 15 14 13 17 17 C 1.38337 * 120.26565 * 359.78139 * 16 15 14 18 18 C 1.37990 * 120.13077 * 359.97438 * 17 16 15 19 19 C 1.52998 * 109.47133 * 119.99715 * 2 1 3 20 20 C 1.53504 * 114.20785 * 300.00220 * 19 2 1 21 21 N 1.47069 * 87.98363 * 220.34571 * 20 19 2 22 22 C 1.36941 * 136.05552 * 207.07801 * 21 20 19 23 23 H 1.08000 * 119.99396 * 7.56018 * 22 21 20 24 24 C 1.38806 * 119.99993 * 187.55101 * 22 21 20 25 25 N 1.31621 * 119.99759 * 174.37714 * 24 22 21 26 26 Si 1.86799 * 119.99972 * 354.38427 * 24 22 21 27 27 H 1.48501 * 109.46963 * 174.94900 * 26 24 22 28 28 H 1.48498 * 109.47184 * 294.94894 * 26 24 22 29 29 H 1.48507 * 109.47082 * 54.95224 * 26 24 22 30 30 C 1.47064 * 87.88742 * 27.34488 * 21 20 19 31 31 H 1.08994 * 109.46942 * 60.00572 * 1 2 3 32 32 H 1.09004 * 109.46240 * 180.02562 * 1 2 3 33 33 H 1.08991 * 109.47021 * 299.99820 * 1 2 3 34 34 H 0.96996 * 120.00139 * 265.00396 * 4 2 1 35 35 H 1.08009 * 125.38902 * 180.02562 * 10 8 7 36 36 H 1.08002 * 126.09925 * 179.97438 * 11 10 8 37 37 H 1.08000 * 120.06599 * 359.97438 * 14 13 12 38 38 H 1.08009 * 119.93430 * 180.25136 * 15 14 13 39 39 H 1.07999 * 119.86772 * 179.76686 * 16 15 14 40 40 H 1.08001 * 119.93159 * 180.02562 * 17 16 15 41 41 H 1.08003 * 120.06751 * 180.02562 * 18 17 16 42 42 H 1.09002 * 113.41395 * 73.19962 * 19 2 1 43 43 H 1.08997 * 113.46758 * 105.56146 * 20 19 2 44 44 H 1.09000 * 113.51898 * 335.13170 * 20 19 2 45 45 H 0.96993 * 120.00423 * 354.88754 * 25 24 22 46 46 H 1.08993 * 113.47012 * 87.43421 * 30 21 20 47 47 H 1.09000 * 113.46758 * 217.87997 * 30 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0185 -0.6906 -1.1961 5 6 2.1471 -0.0183 -2.3571 6 8 1.8579 1.1629 -2.4117 7 6 2.6346 -0.7086 -3.5525 8 7 2.9967 -2.0337 -3.6382 9 1 2.9711 -2.6736 -2.9096 10 6 3.3939 -2.2993 -4.9076 11 6 3.2979 -1.1735 -5.6486 12 6 2.8119 -0.1479 -4.8131 13 6 2.5452 1.2570 -5.2013 14 6 1.3224 1.8497 -4.8880 15 6 1.0815 3.1598 -5.2484 16 6 2.0463 3.8818 -5.9277 17 6 3.2592 3.2976 -6.2460 18 6 3.5137 1.9899 -5.8864 19 6 2.0401 -0.7212 1.2493 20 6 1.5899 -0.0845 2.5715 21 7 2.9390 -0.3444 3.0960 22 6 3.4927 -0.5600 4.3298 23 1 2.8558 -0.6814 5.1935 24 6 4.8722 -0.6227 4.4701 25 7 5.4081 -0.7189 5.6684 26 14 5.9681 -0.5704 2.9583 27 1 7.3914 -0.5289 3.3799 28 1 5.7314 -1.7821 2.1331 29 1 5.6528 0.6416 2.1600 30 6 3.4330 -0.2640 1.7131 31 1 -0.3633 0.5137 -0.8900 32 1 -0.3632 -1.0278 0.0005 33 1 -0.3633 0.5138 0.8899 34 1 2.2491 -1.6318 -1.1525 35 1 3.7333 -3.2589 -5.2689 36 1 3.5454 -1.0778 -6.6956 37 1 0.5667 1.2855 -4.3617 38 1 0.1364 3.6212 -5.0027 39 1 1.8518 4.9057 -6.2110 40 1 4.0088 3.8664 -6.7761 41 1 4.4611 1.5349 -6.1350 42 1 1.9119 -1.8028 1.2077 43 1 0.8095 -0.6492 3.0816 44 1 1.3545 0.9763 2.4855 45 1 4.8450 -0.6714 6.4568 46 1 3.6837 0.7494 1.3999 47 1 4.2229 -0.9818 1.4919 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000970728235.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:52:19 Heat of formation + Delta-G solvation = 96.373049 kcal Electronic energy + Delta-G solvation = -28843.370991 eV Core-core repulsion = 24993.782269 eV Total energy + Delta-G solvation = -3849.588722 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -41.57578 -39.64494 -38.78437 -38.37125 -35.11843 -32.81050 -32.41791 -31.21216 -30.86423 -29.83606 -28.57780 -27.78573 -25.48731 -24.27266 -23.29751 -22.52526 -22.14818 -21.13431 -20.47203 -19.93886 -19.36980 -18.63740 -17.50998 -16.70582 -16.28210 -15.98002 -15.40806 -15.32800 -15.02282 -14.74891 -14.33905 -14.10429 -13.87556 -13.75942 -13.57770 -13.35900 -13.20624 -13.16031 -12.94291 -12.86168 -12.36511 -12.33180 -11.95172 -11.87754 -11.55087 -11.19172 -11.05358 -10.97574 -10.71355 -10.39886 -10.34207 -10.04039 -9.48970 -9.32515 -9.17295 -9.01061 -8.93857 -8.83353 -8.69045 -8.11441 -7.20155 -6.32644 -3.26886 0.95233 1.49786 1.59071 2.52069 2.80123 3.07213 3.28972 3.35358 3.42586 3.61558 3.89229 4.56198 4.59520 4.62327 4.74409 4.84356 4.86760 4.94747 5.01273 5.05345 5.15164 5.15994 5.38411 5.43236 5.48122 5.52647 5.52807 5.60909 5.68288 5.81523 5.85630 5.96637 6.02459 6.09635 6.10949 6.18689 6.22697 6.25570 6.33640 6.34568 6.43555 6.52874 6.56594 6.62217 6.72698 6.85761 7.03504 7.07799 7.08418 7.45368 8.14621 8.20375 8.94340 9.46581 10.33059 11.17283 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.013457 B = 0.002837 C = 0.002764 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2080.130466 B = 9866.827130 C =10126.257491 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.154 3.846 3 H 0.093 0.907 4 N -0.722 5.722 5 C 0.583 3.417 6 O -0.516 6.516 7 C -0.038 4.038 8 N -0.538 5.538 9 H 0.419 0.581 10 C 0.024 3.976 11 C -0.197 4.197 12 C -0.045 4.045 13 C -0.017 4.017 14 C -0.064 4.064 15 C -0.125 4.125 16 C -0.121 4.121 17 C -0.130 4.130 18 C -0.105 4.105 19 C -0.140 4.140 20 C 0.135 3.865 21 N -0.629 5.629 22 C -0.304 4.304 23 H 0.083 0.917 24 C -0.025 4.025 25 N -0.934 5.934 26 Si 1.071 2.929 27 H -0.294 1.294 28 H -0.295 1.295 29 H -0.287 1.287 30 C 0.103 3.897 31 H 0.057 0.943 32 H 0.054 0.946 33 H 0.069 0.931 34 H 0.391 0.609 35 H 0.172 0.828 36 H 0.145 0.855 37 H 0.118 0.882 38 H 0.118 0.882 39 H 0.117 0.883 40 H 0.119 0.881 41 H 0.119 0.881 42 H 0.096 0.904 43 H 0.047 0.953 44 H 0.040 0.960 45 H 0.261 0.739 46 H 0.046 0.954 47 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.510 -1.164 -27.007 28.340 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.050 3.950 3 H 0.111 0.889 4 N -0.373 5.373 5 C 0.370 3.630 6 O -0.392 6.392 7 C -0.152 4.152 8 N -0.134 5.134 9 H 0.256 0.744 10 C -0.111 4.111 11 C -0.221 4.221 12 C -0.054 4.054 13 C -0.018 4.018 14 C -0.082 4.082 15 C -0.143 4.143 16 C -0.139 4.139 17 C -0.148 4.148 18 C -0.123 4.123 19 C -0.160 4.160 20 C 0.008 3.992 21 N -0.357 5.357 22 C -0.430 4.430 23 H 0.101 0.899 24 C -0.224 4.224 25 N -0.576 5.576 26 Si 0.903 3.097 27 H -0.222 1.222 28 H -0.223 1.223 29 H -0.214 1.214 30 C -0.022 4.022 31 H 0.076 0.924 32 H 0.073 0.927 33 H 0.088 0.912 34 H 0.225 0.775 35 H 0.190 0.810 36 H 0.162 0.838 37 H 0.136 0.864 38 H 0.136 0.864 39 H 0.135 0.865 40 H 0.137 0.863 41 H 0.137 0.863 42 H 0.114 0.886 43 H 0.065 0.935 44 H 0.058 0.942 45 H 0.071 0.929 46 H 0.063 0.937 47 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -7.054 -0.520 -27.079 27.988 hybrid contribution -1.384 -0.739 0.998 1.860 sum -8.438 -1.259 -26.081 27.441 Atomic orbital electron populations 1.22117 0.95075 1.01923 1.02475 1.21035 0.93950 0.97548 0.82506 0.88933 1.46036 1.67702 1.13566 1.09952 1.16981 0.77965 0.86477 0.81555 1.90890 1.49944 1.14241 1.84084 1.20546 1.14068 0.84422 0.96172 1.41985 1.50840 1.09342 1.11206 0.74379 1.21910 1.04891 1.00587 0.83756 1.20898 1.09065 0.91976 1.00146 1.18557 1.02663 0.92983 0.91176 1.18072 0.94190 0.91098 0.98421 1.21088 0.96202 0.94750 0.96165 1.21024 0.99483 0.94527 0.99298 1.21138 0.94043 0.99584 0.99157 1.20973 0.97279 0.95166 1.01337 1.21120 0.98497 0.94284 0.98446 1.23567 0.99139 1.00149 0.93189 1.22250 0.90062 0.97196 0.89707 1.45979 1.04064 1.83716 1.01915 1.20163 0.92146 1.47651 0.83074 0.89906 1.25711 0.94232 0.99279 1.03146 1.70910 1.37316 1.52174 0.97198 0.83705 0.75804 0.76106 0.74044 1.22166 1.22345 1.21387 1.22833 0.94645 0.98534 0.86232 0.92407 0.92680 0.91158 0.77540 0.81036 0.83754 0.86371 0.86362 0.86527 0.86336 0.86263 0.88559 0.93498 0.94230 0.92898 0.93682 0.93193 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.86 9.29 37.16 0.35 -1.52 16 2 C 0.15 2.11 2.47 -67.93 -0.17 1.94 16 3 H 0.09 1.48 7.32 -51.93 -0.38 1.10 16 4 N -0.72 -8.60 5.07 -55.20 -0.28 -8.88 16 5 C 0.58 7.91 7.72 -12.98 -0.10 7.81 16 6 O -0.52 -8.52 13.09 5.16 0.07 -8.45 16 7 C -0.04 -0.45 7.07 -81.66 -0.58 -1.03 16 8 N -0.54 -4.33 5.98 -9.23 -0.06 -4.38 16 9 H 0.42 2.22 8.18 -40.82 -0.33 1.88 16 10 C 0.02 0.17 11.86 -16.98 -0.20 -0.03 16 11 C -0.20 -1.81 10.73 -39.67 -0.43 -2.23 16 12 C -0.04 -0.54 5.67 -104.47 -0.59 -1.13 16 13 C -0.02 -0.22 5.27 -104.91 -0.55 -0.77 16 14 C -0.06 -0.83 7.63 -39.22 -0.30 -1.13 16 15 C -0.13 -1.46 10.03 -39.63 -0.40 -1.85 16 16 C -0.12 -1.29 10.04 -39.51 -0.40 -1.68 16 17 C -0.13 -1.37 10.03 -39.64 -0.40 -1.76 16 18 C -0.11 -1.21 9.73 -39.22 -0.38 -1.59 16 19 C -0.14 -2.24 3.67 -89.96 -0.33 -2.57 16 20 C 0.13 2.55 7.33 -8.50 -0.06 2.49 16 21 N -0.63 -15.39 3.69 -184.57 -0.68 -16.08 16 22 C -0.30 -8.81 11.08 -15.06 -0.17 -8.98 16 23 H 0.08 2.52 8.06 -52.49 -0.42 2.09 16 24 C -0.02 -0.75 5.50 -17.43 -0.10 -0.84 16 25 N -0.93 -29.69 13.70 55.49 0.76 -28.93 16 26 Si 1.07 27.14 25.16 -169.99 -4.28 22.86 16 27 H -0.29 -7.58 7.11 56.52 0.40 -7.18 16 28 H -0.30 -6.96 6.51 56.52 0.37 -6.59 16 29 H -0.29 -6.93 6.21 56.52 0.35 -6.58 16 30 C 0.10 2.15 5.27 -8.36 -0.04 2.11 16 31 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 32 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 33 H 0.07 0.81 7.48 -51.93 -0.39 0.43 16 34 H 0.39 3.63 7.73 -40.82 -0.32 3.32 16 35 H 0.17 0.62 8.06 -52.48 -0.42 0.20 16 36 H 0.14 1.07 8.06 -52.49 -0.42 0.64 16 37 H 0.12 1.57 7.36 -52.49 -0.39 1.18 16 38 H 0.12 1.15 8.06 -52.48 -0.42 0.73 16 39 H 0.12 0.96 8.06 -52.49 -0.42 0.54 16 40 H 0.12 0.97 8.06 -52.49 -0.42 0.54 16 41 H 0.12 1.18 8.06 -52.48 -0.42 0.76 16 42 H 0.10 1.42 8.14 -51.93 -0.42 1.00 16 43 H 0.05 0.85 8.14 -51.93 -0.42 0.42 16 44 H 0.04 0.73 8.10 -51.93 -0.42 0.31 16 45 H 0.26 8.18 8.73 -40.82 -0.36 7.82 16 46 H 0.05 0.97 7.44 -51.93 -0.39 0.58 16 47 H 0.05 1.07 4.73 -51.93 -0.25 0.83 16 LS Contribution 382.98 15.07 5.77 5.77 Total: -1.00 -36.10 382.98 -10.28 -46.39 By element: Atomic # 1 Polarization: 11.22 SS G_CDS: -6.75 Total: 4.47 kcal Atomic # 6 Polarization: -7.93 SS G_CDS: -4.85 Total: -12.78 kcal Atomic # 7 Polarization: -58.01 SS G_CDS: -0.26 Total: -58.27 kcal Atomic # 8 Polarization: -8.52 SS G_CDS: 0.07 Total: -8.45 kcal Atomic # 14 Polarization: 27.14 SS G_CDS: -4.28 Total: 22.86 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -36.10 -10.28 -46.39 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000970728235.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 142.762 kcal (2) G-P(sol) polarization free energy of solvation -36.104 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 106.658 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.285 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.389 kcal (6) G-S(sol) free energy of system = (1) + (5) 96.373 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds