Wall clock time and date at job start Tue Mar 31 2020 22:52:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08995 * 109.46502 * 2 1 4 4 N 1.46496 * 109.47421 * 239.99670 * 2 1 3 5 5 C 1.34780 * 119.99734 * 84.99427 * 4 2 1 6 6 O 1.21734 * 120.00179 * 0.02562 * 5 4 2 7 7 C 1.46396 * 119.99812 * 180.02562 * 5 4 2 8 8 N 1.37634 * 126.32898 * 0.02562 * 7 5 4 9 9 H 0.97000 * 125.54826 * 0.02562 * 8 7 5 10 10 C 1.35633 * 108.89719 * 179.97438 * 8 7 5 11 11 C 1.35124 * 109.22606 * 0.02562 * 10 8 7 12 12 C 1.39102 * 126.32503 * 179.72078 * 7 5 4 13 13 C 1.48176 * 126.63316 * 0.03050 * 12 7 5 14 14 C 1.39450 * 120.13094 * 309.72730 * 13 12 7 15 15 C 1.37987 * 119.86388 * 179.79111 * 14 13 12 16 16 C 1.38343 * 120.13268 * 0.47019 * 15 14 13 17 17 C 1.38337 * 120.26565 * 359.78139 * 16 15 14 18 18 C 1.37990 * 120.13077 * 359.97438 * 17 16 15 19 19 C 1.52998 * 109.47133 * 119.99715 * 2 1 3 20 20 C 1.53504 * 114.20785 * 300.00220 * 19 2 1 21 21 N 1.47069 * 87.98363 * 220.34571 * 20 19 2 22 22 C 1.36941 * 136.05552 * 207.07801 * 21 20 19 23 23 H 1.08000 * 119.99396 * 7.56018 * 22 21 20 24 24 C 1.38806 * 119.99993 * 187.55101 * 22 21 20 25 25 N 1.31621 * 119.99759 * 174.37714 * 24 22 21 26 26 Si 1.86799 * 119.99972 * 354.38427 * 24 22 21 27 27 H 1.48501 * 109.46963 * 174.94900 * 26 24 22 28 28 H 1.48498 * 109.47184 * 294.94894 * 26 24 22 29 29 H 1.48507 * 109.47082 * 54.95224 * 26 24 22 30 30 C 1.47064 * 87.88742 * 27.34488 * 21 20 19 31 31 H 1.08994 * 109.46942 * 60.00572 * 1 2 3 32 32 H 1.09004 * 109.46240 * 180.02562 * 1 2 3 33 33 H 1.08991 * 109.47021 * 299.99820 * 1 2 3 34 34 H 0.96996 * 120.00139 * 265.00396 * 4 2 1 35 35 H 1.08009 * 125.38902 * 180.02562 * 10 8 7 36 36 H 1.08002 * 126.09925 * 179.97438 * 11 10 8 37 37 H 1.08000 * 120.06599 * 359.97438 * 14 13 12 38 38 H 1.08009 * 119.93430 * 180.25136 * 15 14 13 39 39 H 1.07999 * 119.86772 * 179.76686 * 16 15 14 40 40 H 1.08001 * 119.93159 * 180.02562 * 17 16 15 41 41 H 1.08003 * 120.06751 * 180.02562 * 18 17 16 42 42 H 1.09002 * 113.41395 * 73.19962 * 19 2 1 43 43 H 1.08997 * 113.46758 * 105.56146 * 20 19 2 44 44 H 1.09000 * 113.51898 * 335.13170 * 20 19 2 45 45 H 0.96993 * 120.00423 * 354.88754 * 25 24 22 46 46 H 1.08993 * 113.47012 * 87.43421 * 30 21 20 47 47 H 1.09000 * 113.46758 * 217.87997 * 30 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0185 -0.6906 -1.1961 5 6 2.1471 -0.0183 -2.3571 6 8 1.8579 1.1629 -2.4117 7 6 2.6346 -0.7086 -3.5525 8 7 2.9967 -2.0337 -3.6382 9 1 2.9711 -2.6736 -2.9096 10 6 3.3939 -2.2993 -4.9076 11 6 3.2979 -1.1735 -5.6486 12 6 2.8119 -0.1479 -4.8131 13 6 2.5452 1.2570 -5.2013 14 6 1.3224 1.8497 -4.8880 15 6 1.0815 3.1598 -5.2484 16 6 2.0463 3.8818 -5.9277 17 6 3.2592 3.2976 -6.2460 18 6 3.5137 1.9899 -5.8864 19 6 2.0401 -0.7212 1.2493 20 6 1.5899 -0.0845 2.5715 21 7 2.9390 -0.3444 3.0960 22 6 3.4927 -0.5600 4.3298 23 1 2.8558 -0.6814 5.1935 24 6 4.8722 -0.6227 4.4701 25 7 5.4081 -0.7189 5.6684 26 14 5.9681 -0.5704 2.9583 27 1 7.3914 -0.5289 3.3799 28 1 5.7314 -1.7821 2.1331 29 1 5.6528 0.6416 2.1600 30 6 3.4330 -0.2640 1.7131 31 1 -0.3633 0.5137 -0.8900 32 1 -0.3632 -1.0278 0.0005 33 1 -0.3633 0.5138 0.8899 34 1 2.2491 -1.6318 -1.1525 35 1 3.7333 -3.2589 -5.2689 36 1 3.5454 -1.0778 -6.6956 37 1 0.5667 1.2855 -4.3617 38 1 0.1364 3.6212 -5.0027 39 1 1.8518 4.9057 -6.2110 40 1 4.0088 3.8664 -6.7761 41 1 4.4611 1.5349 -6.1350 42 1 1.9119 -1.8028 1.2077 43 1 0.8095 -0.6492 3.0816 44 1 1.3545 0.9763 2.4855 45 1 4.8450 -0.6714 6.4568 46 1 3.6837 0.7494 1.3999 47 1 4.2229 -0.9818 1.4919 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000970728235.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:52:18 Heat of formation + Delta-G solvation = 72.170484 kcal Electronic energy + Delta-G solvation = -28844.420493 eV Core-core repulsion = 24993.782269 eV Total energy + Delta-G solvation = -3850.638224 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -42.31773 -40.91031 -39.68168 -39.58103 -36.34745 -34.58865 -33.49936 -32.35516 -31.71539 -30.64902 -29.64749 -29.25505 -27.08574 -25.58183 -24.42108 -23.35757 -23.25386 -22.24747 -21.37286 -21.29968 -20.20738 -19.69826 -19.56222 -17.62396 -17.42084 -17.11950 -16.79418 -16.27831 -15.91966 -15.85330 -15.65764 -15.45083 -15.18160 -14.90058 -14.71919 -14.39515 -14.32219 -14.14797 -13.80329 -13.69381 -13.64665 -13.31814 -13.25790 -13.16698 -13.08691 -12.55702 -12.40113 -12.15975 -11.98432 -11.87213 -11.74952 -11.36364 -11.14108 -11.09135 -10.88226 -10.25470 -10.15346 -9.68995 -9.39089 -9.27183 -8.91752 -8.65280 -5.51785 0.11029 0.63672 0.79397 1.31868 1.43367 1.61927 1.84779 2.03043 2.24534 2.36272 2.48803 2.93958 3.04216 3.14312 3.41469 3.79507 3.90103 4.00481 4.13838 4.15794 4.20221 4.33845 4.34709 4.36006 4.41712 4.46545 4.53685 4.62420 4.64776 4.69868 4.76782 4.80172 4.83014 4.83602 5.01146 5.15533 5.18058 5.23647 5.26282 5.28630 5.36544 5.50296 5.58240 5.69877 5.72763 5.81719 5.91364 5.93222 6.21286 6.47717 6.62784 6.66131 7.19126 7.28525 8.23408 8.86272 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.013457 B = 0.002837 C = 0.002764 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2080.130466 B = 9866.827130 C =10126.257491 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.164 3.836 3 H 0.068 0.932 4 N -0.713 5.713 5 C 0.582 3.418 6 O -0.554 6.554 7 C -0.067 4.067 8 N -0.526 5.526 9 H 0.432 0.568 10 C 0.052 3.948 11 C -0.216 4.216 12 C -0.063 4.063 13 C -0.035 4.035 14 C -0.083 4.083 15 C -0.138 4.138 16 C -0.128 4.128 17 C -0.133 4.133 18 C -0.117 4.117 19 C -0.102 4.102 20 C 0.130 3.870 21 N -0.662 5.662 22 C -0.291 4.291 23 H 0.053 0.947 24 C -0.085 4.085 25 N -0.971 5.971 26 Si 1.109 2.891 27 H -0.304 1.304 28 H -0.264 1.264 29 H -0.273 1.273 30 C 0.093 3.907 31 H 0.051 0.949 32 H 0.074 0.926 33 H 0.072 0.928 34 H 0.407 0.593 35 H 0.216 0.784 36 H 0.159 0.841 37 H 0.104 0.896 38 H 0.129 0.871 39 H 0.141 0.859 40 H 0.144 0.856 41 H 0.132 0.868 42 H 0.120 0.880 43 H 0.058 0.942 44 H 0.048 0.952 45 H 0.247 0.753 46 H 0.039 0.961 47 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.622 -2.616 -30.271 31.584 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.059 3.941 3 H 0.087 0.913 4 N -0.364 5.364 5 C 0.370 3.630 6 O -0.432 6.432 7 C -0.181 4.181 8 N -0.122 5.122 9 H 0.273 0.727 10 C -0.085 4.085 11 C -0.239 4.239 12 C -0.072 4.072 13 C -0.036 4.036 14 C -0.102 4.102 15 C -0.156 4.156 16 C -0.146 4.146 17 C -0.150 4.150 18 C -0.135 4.135 19 C -0.121 4.121 20 C 0.005 3.995 21 N -0.390 5.390 22 C -0.418 4.418 23 H 0.071 0.929 24 C -0.277 4.277 25 N -0.616 5.616 26 Si 0.935 3.065 27 H -0.232 1.232 28 H -0.190 1.190 29 H -0.199 1.199 30 C -0.032 4.032 31 H 0.070 0.930 32 H 0.093 0.907 33 H 0.091 0.909 34 H 0.243 0.757 35 H 0.233 0.767 36 H 0.176 0.824 37 H 0.122 0.878 38 H 0.147 0.853 39 H 0.158 0.842 40 H 0.162 0.838 41 H 0.150 0.850 42 H 0.138 0.862 43 H 0.076 0.924 44 H 0.066 0.934 45 H 0.056 0.944 46 H 0.057 0.943 47 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -7.224 -2.012 -30.362 31.275 hybrid contribution -1.450 -0.268 1.976 2.466 sum -8.674 -2.280 -28.386 29.769 Atomic orbital electron populations 1.22043 0.93294 1.03158 1.02345 1.20758 0.95143 0.96057 0.82157 0.91340 1.45840 1.67444 1.14184 1.08968 1.17243 0.77364 0.86139 0.82226 1.90869 1.51669 1.15973 1.84732 1.20226 1.16424 0.86064 0.95390 1.41983 1.49890 1.08218 1.12151 0.72722 1.22596 1.01688 1.01492 0.82679 1.21171 1.09776 0.91962 1.00989 1.18840 1.03080 0.93227 0.92073 1.18360 0.94356 0.92126 0.98737 1.21104 0.96486 0.95461 0.97117 1.21276 1.00473 0.94356 0.99541 1.21461 0.93818 1.00649 0.98628 1.21338 0.97793 0.95063 1.00853 1.21372 0.98831 0.94832 0.98488 1.23256 0.94941 1.01267 0.92669 1.22478 0.88003 0.98128 0.90918 1.46125 1.06987 1.84124 1.01780 1.20057 0.91973 1.45357 0.84429 0.92890 1.27004 0.96215 0.99739 1.04759 1.71006 1.37432 1.55510 0.97670 0.83253 0.73567 0.77930 0.71749 1.23220 1.18992 1.19924 1.23013 0.97376 0.98397 0.84371 0.92993 0.90722 0.90900 0.75740 0.76707 0.82383 0.87792 0.85270 0.84154 0.83841 0.84986 0.86231 0.92353 0.93416 0.94382 0.94287 0.93229 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.21 9.29 71.98 0.67 -2.54 16 2 C 0.16 4.15 2.47 44.99 0.11 4.26 16 3 H 0.07 2.13 7.32 -2.39 -0.02 2.11 16 4 N -0.71 -15.43 5.07 -446.75 -2.27 -17.70 16 5 C 0.58 15.26 7.72 86.37 0.67 15.93 16 6 O -0.55 -18.52 13.09 -4.46 -0.06 -18.58 16 7 C -0.07 -1.48 7.07 40.56 0.29 -1.19 16 8 N -0.53 -6.75 5.98 -183.13 -1.10 -7.85 16 9 H 0.43 2.90 8.18 -92.71 -0.76 2.14 16 10 C 0.05 0.54 11.86 83.39 0.99 1.53 16 11 C -0.22 -3.43 10.73 22.21 0.24 -3.19 16 12 C -0.06 -1.44 5.67 -19.77 -0.11 -1.55 16 13 C -0.04 -0.90 5.27 -20.05 -0.11 -1.01 16 14 C -0.08 -2.23 7.63 22.50 0.17 -2.06 16 15 C -0.14 -3.24 10.03 22.24 0.22 -3.02 16 16 C -0.13 -2.59 10.04 22.32 0.22 -2.37 16 17 C -0.13 -2.63 10.03 22.23 0.22 -2.41 16 18 C -0.12 -2.61 9.73 22.50 0.22 -2.39 16 19 C -0.10 -2.96 3.67 -10.37 -0.04 -3.00 16 20 C 0.13 4.70 7.33 83.18 0.61 5.31 16 21 N -0.66 -31.80 3.69 -737.86 -2.72 -34.52 16 22 C -0.29 -17.06 11.08 84.03 0.93 -16.13 16 23 H 0.05 3.34 8.06 -2.91 -0.02 3.32 16 24 C -0.09 -5.18 5.50 84.86 0.47 -4.71 16 25 N -0.97 -63.56 13.70 21.65 0.30 -63.26 16 26 Si 1.11 54.48 25.16 68.60 1.73 56.20 16 27 H -0.30 -15.32 7.11 99.48 0.71 -14.62 16 28 H -0.26 -11.48 6.51 99.48 0.65 -10.83 16 29 H -0.27 -12.65 6.21 99.48 0.62 -12.03 16 30 C 0.09 3.70 5.27 83.27 0.44 4.14 16 31 H 0.05 1.20 8.14 -2.39 -0.02 1.18 16 32 H 0.07 1.32 8.14 -2.38 -0.02 1.30 16 33 H 0.07 1.52 7.48 -2.39 -0.02 1.50 16 34 H 0.41 6.20 7.73 -92.71 -0.72 5.48 16 35 H 0.22 0.29 8.06 -2.91 -0.02 0.27 16 36 H 0.16 1.95 8.06 -2.91 -0.02 1.92 16 37 H 0.10 2.95 7.36 -2.91 -0.02 2.93 16 38 H 0.13 2.55 8.06 -2.91 -0.02 2.53 16 39 H 0.14 2.07 8.06 -2.91 -0.02 2.04 16 40 H 0.14 2.02 8.06 -2.91 -0.02 1.99 16 41 H 0.13 2.46 8.06 -2.91 -0.02 2.44 16 42 H 0.12 3.02 8.14 -2.39 -0.02 3.00 16 43 H 0.06 1.98 8.14 -2.39 -0.02 1.96 16 44 H 0.05 1.68 8.10 -2.39 -0.02 1.66 16 45 H 0.25 16.20 8.73 -92.71 -0.81 15.39 16 46 H 0.04 1.62 7.44 -2.39 -0.02 1.61 16 47 H 0.05 1.99 4.73 -2.39 -0.01 1.98 16 Total: -1.00 -82.27 382.98 1.43 -80.84 By element: Atomic # 1 Polarization: 19.93 SS G_CDS: -0.66 Total: 19.27 kcal Atomic # 6 Polarization: -20.61 SS G_CDS: 6.21 Total: -14.40 kcal Atomic # 7 Polarization: -117.54 SS G_CDS: -5.79 Total: -123.33 kcal Atomic # 8 Polarization: -18.52 SS G_CDS: -0.06 Total: -18.58 kcal Atomic # 14 Polarization: 54.48 SS G_CDS: 1.73 Total: 56.20 kcal Total: -82.27 1.43 -80.84 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000970728235.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 153.010 kcal (2) G-P(sol) polarization free energy of solvation -82.272 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.738 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.432 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.840 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.170 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds