Wall clock time and date at job start Tue Mar 31 2020 22:52:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08995 * 109.47053 * 2 1 4 4 N 1.46494 * 109.47105 * 239.99349 * 2 1 3 5 5 C 1.34781 * 119.99863 * 85.00356 * 4 2 1 6 6 O 1.21637 * 120.00106 * 359.97438 * 5 4 2 7 7 C 1.47133 * 119.99964 * 179.97438 * 5 4 2 8 8 C 1.36617 * 126.97317 * 359.69767 * 7 5 4 9 9 N 1.34711 * 108.67976 * 179.82713 * 8 7 5 10 10 H 0.97000 * 124.72755 * 180.20575 * 9 8 7 11 11 C 1.36218 * 110.54665 * 0.44450 * 9 8 7 12 12 C 1.35744 * 108.68182 * 359.72326 * 11 9 8 13 13 C 1.48276 * 126.98506 * 180.02562 * 12 11 9 14 14 C 1.39390 * 120.12625 * 129.72877 * 13 12 11 15 15 C 1.38009 * 119.87028 * 179.67990 * 14 13 12 16 16 C 1.38333 * 120.12452 * 0.62052 * 15 14 13 17 17 C 1.38330 * 120.25853 * 359.67615 * 16 15 14 18 18 C 1.38006 * 120.12560 * 359.97438 * 17 16 15 19 19 C 1.53000 * 109.46774 * 119.99801 * 2 1 3 20 20 C 1.53498 * 114.20476 * 299.99885 * 19 2 1 21 21 N 1.47072 * 87.98531 * 87.52370 * 20 19 2 22 22 C 1.36937 * 136.05474 * 207.08946 * 21 20 19 23 23 H 1.07997 * 120.00175 * 6.65345 * 22 21 20 24 24 C 1.38812 * 119.99799 * 186.65772 * 22 21 20 25 25 N 1.31617 * 119.99791 * 6.44001 * 24 22 21 26 26 Si 1.86796 * 120.00183 * 186.44246 * 24 22 21 27 27 H 1.48498 * 109.47075 * 265.01704 * 26 24 22 28 28 H 1.48500 * 109.46850 * 25.01427 * 26 24 22 29 29 H 1.48496 * 109.47374 * 145.01871 * 26 24 22 30 30 C 1.47066 * 87.88224 * 27.34172 * 21 20 19 31 31 H 1.08999 * 109.46965 * 60.00649 * 1 2 3 32 32 H 1.09004 * 109.47240 * 179.97438 * 1 2 3 33 33 H 1.08995 * 109.47689 * 300.00395 * 1 2 3 34 34 H 0.97005 * 120.00380 * 264.99872 * 4 2 1 35 35 H 1.07991 * 125.66499 * 359.96238 * 8 7 5 36 36 H 1.08001 * 125.65904 * 179.76049 * 11 9 8 37 37 H 1.07996 * 120.06742 * 0.02562 * 14 13 12 38 38 H 1.07996 * 119.93687 * 180.33777 * 15 14 13 39 39 H 1.08007 * 119.87518 * 179.69770 * 16 15 14 40 40 H 1.08003 * 119.93798 * 180.02562 * 17 16 15 41 41 H 1.07997 * 120.06567 * 180.02562 * 18 17 16 42 42 H 1.08994 * 113.41432 * 166.80325 * 19 2 1 43 43 H 1.09000 * 113.47213 * 332.73897 * 20 19 2 44 44 H 1.09002 * 113.52190 * 202.30784 * 20 19 2 45 45 H 0.97000 * 119.99892 * 179.97438 * 25 24 22 46 46 H 1.09000 * 113.46757 * 87.44265 * 30 21 20 47 47 H 1.08999 * 113.46471 * 217.87772 * 30 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0183 -0.6907 -1.1960 5 6 2.1471 -0.0184 -2.3571 6 8 1.8574 1.1617 -2.4119 7 6 2.6381 -0.7120 -3.5582 8 6 3.0075 -2.0236 -3.6564 9 7 3.3938 -2.2694 -4.9233 10 1 3.6999 -3.1297 -5.2506 11 6 3.2997 -1.1402 -5.6794 12 6 2.8368 -0.1312 -4.8982 13 6 2.5823 1.2705 -5.3095 14 6 1.3621 1.8758 -5.0136 15 6 1.1334 3.1829 -5.3930 16 6 2.1074 3.8878 -6.0771 17 6 3.3179 3.2902 -6.3789 18 6 3.5605 1.9861 -5.9982 19 6 2.0399 -0.7212 1.2493 20 6 1.5897 -0.0845 2.5714 21 7 0.3743 -0.9090 2.4946 22 6 -0.9132 -0.8124 2.9511 23 1 -1.2493 0.0949 3.4309 24 6 -1.7861 -1.8807 2.7972 25 7 -1.3448 -3.0289 2.3291 26 14 -3.5870 -1.6886 3.2543 27 1 -3.7999 -2.1730 4.6418 28 1 -3.9701 -0.2566 3.1657 29 1 -4.4227 -2.4834 2.3189 30 6 1.1518 -1.8858 1.7173 31 1 -0.3633 0.5137 -0.8900 32 1 -0.3634 -1.0277 -0.0005 33 1 -0.3634 0.5139 0.8899 34 1 2.2491 -1.6319 -1.1524 35 1 2.9905 -2.7444 -2.8524 36 1 3.5511 -1.0611 -6.7267 37 1 0.5993 1.3250 -4.4835 38 1 0.1904 3.6547 -5.1595 39 1 1.9222 4.9089 -6.3764 40 1 4.0749 3.8456 -6.9128 41 1 4.5061 1.5206 -6.2339 42 1 3.1024 -0.9609 1.2077 43 1 1.3944 0.9851 2.4938 44 1 2.2316 -0.3353 3.4159 45 1 -1.9547 -3.7755 2.2219 46 1 1.6788 -2.6121 2.3360 47 1 0.5833 -2.3509 0.9120 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000970879524.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:52:34 Heat of formation + Delta-G solvation = 100.674579 kcal Electronic energy + Delta-G solvation = -28995.172053 eV Core-core repulsion = 25145.769859 eV Total energy + Delta-G solvation = -3849.402194 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -41.29729 -39.40306 -38.68850 -38.01986 -34.23837 -32.50864 -32.17806 -30.89085 -30.64959 -28.92375 -28.29559 -27.64370 -24.67680 -24.25230 -23.07458 -22.84843 -22.29111 -21.12777 -19.79834 -19.35231 -18.87015 -18.00576 -16.72707 -16.49366 -16.10100 -15.44063 -15.02444 -14.98973 -14.85197 -14.48704 -14.38720 -13.93908 -13.88921 -13.67897 -13.28732 -13.26059 -13.01434 -12.78290 -12.57478 -12.22642 -12.08227 -11.68754 -11.15877 -11.09551 -11.04306 -10.92758 -10.92542 -10.73199 -10.53785 -10.30376 -9.84388 -9.67130 -9.56778 -9.26354 -9.10791 -8.74813 -8.69056 -8.66553 -8.39327 -8.04006 -6.79909 -5.77322 -3.06607 1.27434 1.59251 1.78812 2.40353 3.02539 3.39958 3.46402 3.47650 3.65300 3.81926 3.99384 4.48293 4.70725 4.87574 4.93205 5.04220 5.08731 5.21416 5.30344 5.35841 5.37898 5.44492 5.53781 5.59741 5.60679 5.72915 5.87309 6.01760 6.11326 6.18595 6.21520 6.36953 6.42626 6.51148 6.56366 6.58535 6.65101 6.69890 6.77948 6.80252 6.83130 6.86333 7.10305 7.14650 7.22512 7.25689 7.32906 7.51326 7.59771 7.98127 8.04580 8.74485 9.05421 9.72095 10.67363 11.41269 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.014523 B = 0.002766 C = 0.002600 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1927.527029 B =10120.434188 C =10767.499865 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.178 3.822 3 H 0.076 0.924 4 N -0.719 5.719 5 C 0.582 3.418 6 O -0.539 6.539 7 C -0.206 4.206 8 C 0.044 3.956 9 N -0.548 5.548 10 H 0.418 0.582 11 C -0.008 4.008 12 C -0.081 4.081 13 C -0.008 4.008 14 C -0.064 4.064 15 C -0.123 4.123 16 C -0.125 4.125 17 C -0.130 4.130 18 C -0.114 4.114 19 C -0.161 4.161 20 C 0.125 3.875 21 N -0.603 5.603 22 C -0.212 4.212 23 H 0.080 0.920 24 C -0.005 4.005 25 N -0.919 5.919 26 Si 0.906 3.094 27 H -0.291 1.291 28 H -0.279 1.279 29 H -0.291 1.291 30 C 0.166 3.834 31 H 0.029 0.971 32 H 0.068 0.932 33 H 0.084 0.916 34 H 0.393 0.607 35 H 0.175 0.825 36 H 0.171 0.829 37 H 0.122 0.878 38 H 0.119 0.881 39 H 0.116 0.884 40 H 0.117 0.883 41 H 0.116 0.884 42 H 0.069 0.931 43 H 0.042 0.958 44 H 0.033 0.967 45 H 0.252 0.748 46 H 0.025 0.975 47 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.767 2.864 -18.924 23.007 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.075 3.925 3 H 0.094 0.906 4 N -0.368 5.368 5 C 0.369 3.631 6 O -0.417 6.417 7 C -0.216 4.216 8 C -0.092 4.092 9 N -0.142 5.142 10 H 0.255 0.745 11 C -0.137 4.137 12 C -0.087 4.087 13 C -0.009 4.009 14 C -0.083 4.083 15 C -0.141 4.141 16 C -0.143 4.143 17 C -0.148 4.148 18 C -0.132 4.132 19 C -0.181 4.181 20 C -0.002 4.002 21 N -0.329 5.329 22 C -0.340 4.340 23 H 0.097 0.903 24 C -0.202 4.202 25 N -0.566 5.566 26 Si 0.737 3.263 27 H -0.218 1.218 28 H -0.205 1.205 29 H -0.217 1.217 30 C 0.040 3.960 31 H 0.048 0.952 32 H 0.086 0.914 33 H 0.103 0.897 34 H 0.226 0.774 35 H 0.192 0.808 36 H 0.188 0.812 37 H 0.140 0.860 38 H 0.137 0.863 39 H 0.134 0.866 40 H 0.135 0.865 41 H 0.134 0.866 42 H 0.087 0.913 43 H 0.060 0.940 44 H 0.051 0.949 45 H 0.062 0.938 46 H 0.043 0.957 47 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 12.230 3.506 -18.934 22.811 hybrid contribution -0.640 -1.098 0.467 1.354 sum 11.590 2.408 -18.467 21.936 Atomic orbital electron populations 1.22134 0.93418 1.03583 1.01096 1.20504 0.95317 0.95260 0.81420 0.90562 1.46008 1.67319 1.13646 1.09875 1.17314 0.77483 0.86299 0.82008 1.90777 1.50730 1.15398 1.84769 1.20557 1.13007 0.93484 0.94582 1.21950 1.02521 0.97110 0.87580 1.41396 1.52151 1.11669 1.08957 0.74521 1.21765 1.08930 0.85528 0.97471 1.19096 1.05287 0.92517 0.91834 1.18011 0.93911 0.91286 0.97663 1.21160 0.96472 0.94612 0.96009 1.21070 0.99444 0.94666 0.98934 1.21115 0.94070 0.99580 0.99498 1.20937 0.97284 0.95153 1.01450 1.21100 0.98337 0.94548 0.99188 1.23376 0.98339 1.01465 0.94905 1.22359 0.88985 0.95833 0.93026 1.45748 1.04164 1.20690 1.62278 1.18880 0.83608 0.98695 1.32772 0.90251 1.24747 0.98188 0.95310 1.01945 1.69836 1.33753 1.01719 1.51284 0.86183 0.85064 0.77431 0.77639 1.21798 1.20490 1.21698 1.22072 0.89361 0.90612 0.93979 0.95217 0.91353 0.89692 0.77368 0.80804 0.81220 0.86032 0.86324 0.86628 0.86528 0.86557 0.91259 0.94023 0.94918 0.93816 0.95691 0.91757 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.01 8.06 37.16 0.30 -2.71 16 2 C 0.18 3.21 2.76 -67.93 -0.19 3.02 16 3 H 0.08 1.45 7.58 -51.93 -0.39 1.06 16 4 N -0.72 -11.12 5.07 -54.98 -0.28 -11.40 16 5 C 0.58 9.61 7.77 -12.65 -0.10 9.51 16 6 O -0.54 -10.65 13.73 5.24 0.07 -10.57 16 7 C -0.21 -2.79 6.29 -103.15 -0.65 -3.44 16 8 C 0.04 0.42 11.38 -16.87 -0.19 0.23 16 9 N -0.55 -3.97 5.88 -12.64 -0.07 -4.05 16 10 H 0.42 1.47 8.96 -40.82 -0.37 1.10 16 11 C -0.01 -0.07 11.80 -16.50 -0.19 -0.27 16 12 C -0.08 -1.03 5.79 -102.94 -0.60 -1.63 16 13 C -0.01 -0.11 5.40 -104.91 -0.57 -0.68 16 14 C -0.06 -0.95 7.94 -39.24 -0.31 -1.26 16 15 C -0.12 -1.61 10.03 -39.63 -0.40 -2.01 16 16 C -0.12 -1.43 10.04 -39.51 -0.40 -1.83 16 17 C -0.13 -1.43 10.03 -39.63 -0.40 -1.83 16 18 C -0.11 -1.33 9.72 -39.23 -0.38 -1.72 16 19 C -0.16 -2.88 4.25 -89.97 -0.38 -3.26 16 20 C 0.12 2.50 7.86 -8.51 -0.07 2.44 16 21 N -0.60 -14.68 2.16 -184.59 -0.40 -15.08 16 22 C -0.21 -5.74 9.57 -15.06 -0.14 -5.88 16 23 H 0.08 2.11 7.84 -52.49 -0.41 1.70 16 24 C -0.01 -0.14 5.50 -17.43 -0.10 -0.24 16 25 N -0.92 -26.42 11.81 55.49 0.66 -25.76 16 26 Si 0.91 21.97 29.56 -169.99 -5.02 16.95 16 27 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 28 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 29 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 30 C 0.17 3.64 6.22 -8.38 -0.05 3.59 16 31 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.07 1.58 6.32 -51.93 -0.33 1.26 16 33 H 0.08 1.94 5.93 -51.93 -0.31 1.64 16 34 H 0.39 5.12 7.54 -40.82 -0.31 4.81 16 35 H 0.17 1.19 7.44 -52.49 -0.39 0.80 16 36 H 0.17 1.03 8.06 -52.49 -0.42 0.61 16 37 H 0.12 1.96 7.48 -52.49 -0.39 1.57 16 38 H 0.12 1.37 8.06 -52.49 -0.42 0.95 16 39 H 0.12 1.05 8.06 -52.48 -0.42 0.62 16 40 H 0.12 0.98 8.06 -52.48 -0.42 0.55 16 41 H 0.12 1.12 8.06 -52.49 -0.42 0.69 16 42 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 43 H 0.04 0.81 8.12 -51.93 -0.42 0.39 16 44 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 45 H 0.25 7.09 8.31 -40.82 -0.34 6.75 16 46 H 0.03 0.58 8.14 -51.93 -0.42 0.15 16 47 H 0.06 1.53 6.17 -51.93 -0.32 1.21 16 LS Contribution 384.47 15.07 5.79 5.79 Total: -1.00 -34.12 384.47 -10.65 -44.76 By element: Atomic # 1 Polarization: 13.88 SS G_CDS: -6.58 Total: 7.30 kcal Atomic # 6 Polarization: -3.14 SS G_CDS: -4.81 Total: -7.95 kcal Atomic # 7 Polarization: -56.18 SS G_CDS: -0.10 Total: -56.28 kcal Atomic # 8 Polarization: -10.65 SS G_CDS: 0.07 Total: -10.57 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -5.02 Total: 16.95 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -34.12 -10.65 -44.76 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000970879524.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 145.439 kcal (2) G-P(sol) polarization free energy of solvation -34.119 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 111.320 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.645 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.765 kcal (6) G-S(sol) free energy of system = (1) + (5) 100.675 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds