Wall clock time and date at job start Tue Mar 31 2020 22:52:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08995 * 109.47053 * 2 1 4 4 N 1.46494 * 109.47105 * 239.99349 * 2 1 3 5 5 C 1.34781 * 119.99863 * 85.00356 * 4 2 1 6 6 O 1.21637 * 120.00106 * 359.97438 * 5 4 2 7 7 C 1.47133 * 119.99964 * 179.97438 * 5 4 2 8 8 C 1.36617 * 126.97317 * 359.69767 * 7 5 4 9 9 N 1.34711 * 108.67976 * 179.82713 * 8 7 5 10 10 H 0.97000 * 124.72755 * 180.20575 * 9 8 7 11 11 C 1.36218 * 110.54665 * 0.44450 * 9 8 7 12 12 C 1.35744 * 108.68182 * 359.72326 * 11 9 8 13 13 C 1.48276 * 126.98506 * 180.02562 * 12 11 9 14 14 C 1.39390 * 120.12625 * 129.72877 * 13 12 11 15 15 C 1.38009 * 119.87028 * 179.67990 * 14 13 12 16 16 C 1.38333 * 120.12452 * 0.62052 * 15 14 13 17 17 C 1.38330 * 120.25853 * 359.67615 * 16 15 14 18 18 C 1.38006 * 120.12560 * 359.97438 * 17 16 15 19 19 C 1.53000 * 109.46774 * 119.99801 * 2 1 3 20 20 C 1.53498 * 114.20476 * 299.99885 * 19 2 1 21 21 N 1.47072 * 87.98531 * 87.52370 * 20 19 2 22 22 C 1.36937 * 136.05474 * 207.08946 * 21 20 19 23 23 H 1.07997 * 120.00175 * 6.65345 * 22 21 20 24 24 C 1.38812 * 119.99799 * 186.65772 * 22 21 20 25 25 N 1.31617 * 119.99791 * 6.44001 * 24 22 21 26 26 Si 1.86796 * 120.00183 * 186.44246 * 24 22 21 27 27 H 1.48498 * 109.47075 * 265.01704 * 26 24 22 28 28 H 1.48500 * 109.46850 * 25.01427 * 26 24 22 29 29 H 1.48496 * 109.47374 * 145.01871 * 26 24 22 30 30 C 1.47066 * 87.88224 * 27.34172 * 21 20 19 31 31 H 1.08999 * 109.46965 * 60.00649 * 1 2 3 32 32 H 1.09004 * 109.47240 * 179.97438 * 1 2 3 33 33 H 1.08995 * 109.47689 * 300.00395 * 1 2 3 34 34 H 0.97005 * 120.00380 * 264.99872 * 4 2 1 35 35 H 1.07991 * 125.66499 * 359.96238 * 8 7 5 36 36 H 1.08001 * 125.65904 * 179.76049 * 11 9 8 37 37 H 1.07996 * 120.06742 * 0.02562 * 14 13 12 38 38 H 1.07996 * 119.93687 * 180.33777 * 15 14 13 39 39 H 1.08007 * 119.87518 * 179.69770 * 16 15 14 40 40 H 1.08003 * 119.93798 * 180.02562 * 17 16 15 41 41 H 1.07997 * 120.06567 * 180.02562 * 18 17 16 42 42 H 1.08994 * 113.41432 * 166.80325 * 19 2 1 43 43 H 1.09000 * 113.47213 * 332.73897 * 20 19 2 44 44 H 1.09002 * 113.52190 * 202.30784 * 20 19 2 45 45 H 0.97000 * 119.99892 * 179.97438 * 25 24 22 46 46 H 1.09000 * 113.46757 * 87.44265 * 30 21 20 47 47 H 1.08999 * 113.46471 * 217.87772 * 30 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0183 -0.6907 -1.1960 5 6 2.1471 -0.0184 -2.3571 6 8 1.8574 1.1617 -2.4119 7 6 2.6381 -0.7120 -3.5582 8 6 3.0075 -2.0236 -3.6564 9 7 3.3938 -2.2694 -4.9233 10 1 3.6999 -3.1297 -5.2506 11 6 3.2997 -1.1402 -5.6794 12 6 2.8368 -0.1312 -4.8982 13 6 2.5823 1.2705 -5.3095 14 6 1.3621 1.8758 -5.0136 15 6 1.1334 3.1829 -5.3930 16 6 2.1074 3.8878 -6.0771 17 6 3.3179 3.2902 -6.3789 18 6 3.5605 1.9861 -5.9982 19 6 2.0399 -0.7212 1.2493 20 6 1.5897 -0.0845 2.5714 21 7 0.3743 -0.9090 2.4946 22 6 -0.9132 -0.8124 2.9511 23 1 -1.2493 0.0949 3.4309 24 6 -1.7861 -1.8807 2.7972 25 7 -1.3448 -3.0289 2.3291 26 14 -3.5870 -1.6886 3.2543 27 1 -3.7999 -2.1730 4.6418 28 1 -3.9701 -0.2566 3.1657 29 1 -4.4227 -2.4834 2.3189 30 6 1.1518 -1.8858 1.7173 31 1 -0.3633 0.5137 -0.8900 32 1 -0.3634 -1.0277 -0.0005 33 1 -0.3634 0.5139 0.8899 34 1 2.2491 -1.6319 -1.1524 35 1 2.9905 -2.7444 -2.8524 36 1 3.5511 -1.0611 -6.7267 37 1 0.5993 1.3250 -4.4835 38 1 0.1904 3.6547 -5.1595 39 1 1.9222 4.9089 -6.3764 40 1 4.0749 3.8456 -6.9128 41 1 4.5061 1.5206 -6.2339 42 1 3.1024 -0.9609 1.2077 43 1 1.3944 0.9851 2.4938 44 1 2.2316 -0.3353 3.4159 45 1 -1.9547 -3.7755 2.2219 46 1 1.6788 -2.6121 2.3360 47 1 0.5833 -2.3509 0.9120 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000970879524.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:52:32 Heat of formation + Delta-G solvation = 80.336527 kcal Electronic energy + Delta-G solvation = -28996.053978 eV Core-core repulsion = 25145.769859 eV Total energy + Delta-G solvation = -3850.284118 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.27 seconds Orbital eigenvalues (eV) -42.11309 -40.91732 -39.58874 -39.45326 -35.72817 -34.14612 -33.35685 -32.04696 -31.65776 -30.16955 -29.54782 -29.13530 -26.40835 -25.96970 -24.34680 -23.73354 -23.30201 -22.62688 -20.70691 -20.64462 -19.85203 -19.26721 -18.58228 -17.37230 -17.26140 -16.92244 -16.86037 -16.07526 -15.88925 -15.82701 -15.70041 -15.49926 -14.84016 -14.74230 -14.48529 -14.31178 -14.17486 -14.05806 -13.70258 -13.68428 -13.47036 -13.02087 -12.92502 -12.90107 -12.72720 -12.55034 -12.38326 -12.07568 -11.96664 -11.84685 -11.64327 -11.47758 -11.00724 -10.79555 -10.66618 -10.14663 -9.93584 -9.68258 -9.39110 -8.87471 -8.77244 -7.87402 -5.15224 0.36162 0.64832 0.90041 1.45131 1.46578 1.54659 1.57270 2.29653 2.49215 2.50286 2.67685 3.05704 3.36650 3.57561 3.75217 3.91079 3.98272 4.07762 4.18682 4.20953 4.26670 4.37430 4.42606 4.47469 4.59807 4.71436 4.73763 4.76280 4.79944 4.89074 4.90915 5.03333 5.05827 5.13643 5.21891 5.24552 5.28292 5.30673 5.52540 5.56460 5.58169 5.70055 5.72350 5.72816 5.79678 5.89049 5.97530 5.98885 6.24274 6.69201 6.84194 6.98074 7.51674 7.66264 8.68600 9.31233 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.014523 B = 0.002766 C = 0.002600 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1927.527029 B =10120.434188 C =10767.499865 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C 0.189 3.811 3 H 0.071 0.929 4 N -0.710 5.710 5 C 0.578 3.422 6 O -0.581 6.581 7 C -0.253 4.253 8 C 0.068 3.932 9 N -0.527 5.527 10 H 0.441 0.559 11 C 0.016 3.984 12 C -0.120 4.120 13 C -0.021 4.021 14 C -0.094 4.094 15 C -0.141 4.141 16 C -0.131 4.131 17 C -0.128 4.128 18 C -0.118 4.118 19 C -0.126 4.126 20 C 0.122 3.878 21 N -0.630 5.630 22 C -0.214 4.214 23 H 0.077 0.923 24 C -0.058 4.058 25 N -0.946 5.946 26 Si 0.963 3.037 27 H -0.289 1.289 28 H -0.273 1.273 29 H -0.296 1.296 30 C 0.168 3.832 31 H 0.019 0.981 32 H 0.041 0.959 33 H 0.061 0.939 34 H 0.407 0.593 35 H 0.203 0.797 36 H 0.204 0.796 37 H 0.090 0.910 38 H 0.121 0.879 39 H 0.140 0.860 40 H 0.149 0.851 41 H 0.141 0.859 42 H 0.109 0.891 43 H 0.046 0.954 44 H 0.050 0.950 45 H 0.246 0.754 46 H 0.019 0.981 47 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.469 2.387 -20.621 25.889 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.084 3.916 3 H 0.089 0.911 4 N -0.361 5.361 5 C 0.368 3.632 6 O -0.462 6.462 7 C -0.263 4.263 8 C -0.070 4.070 9 N -0.122 5.122 10 H 0.282 0.718 11 C -0.114 4.114 12 C -0.127 4.127 13 C -0.021 4.021 14 C -0.112 4.112 15 C -0.159 4.159 16 C -0.148 4.148 17 C -0.146 4.146 18 C -0.136 4.136 19 C -0.146 4.146 20 C -0.004 4.004 21 N -0.356 5.356 22 C -0.342 4.342 23 H 0.095 0.905 24 C -0.252 4.252 25 N -0.595 5.595 26 Si 0.792 3.208 27 H -0.216 1.216 28 H -0.198 1.198 29 H -0.223 1.223 30 C 0.042 3.958 31 H 0.038 0.962 32 H 0.060 0.940 33 H 0.080 0.920 34 H 0.243 0.757 35 H 0.220 0.780 36 H 0.221 0.779 37 H 0.108 0.892 38 H 0.139 0.861 39 H 0.158 0.842 40 H 0.166 0.834 41 H 0.159 0.841 42 H 0.127 0.873 43 H 0.065 0.935 44 H 0.068 0.932 45 H 0.055 0.945 46 H 0.037 0.963 47 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges 14.974 3.001 -20.645 25.679 hybrid contribution -1.430 -0.931 0.941 1.949 sum 13.544 2.070 -19.704 23.999 Atomic orbital electron populations 1.21888 0.95888 1.01140 0.99399 1.20192 0.93074 0.95474 0.82811 0.91110 1.45796 1.67135 1.14199 1.08981 1.17845 0.76590 0.85981 0.82821 1.90749 1.52634 1.17396 1.85416 1.20427 1.16490 0.95412 0.93923 1.22256 0.99872 0.95899 0.88929 1.41430 1.50407 1.12359 1.07958 0.71810 1.22167 1.06169 0.84673 0.98390 1.19309 1.07762 0.93172 0.92409 1.18262 0.93694 0.92361 0.97823 1.21070 0.96977 0.95506 0.97683 1.21246 1.00428 0.94475 0.99714 1.21423 0.93906 1.00617 0.98901 1.21365 0.97549 0.95087 1.00565 1.21416 0.98693 0.94876 0.98602 1.23118 0.99611 0.98336 0.93546 1.22551 0.87455 0.95781 0.94623 1.46008 1.04660 1.22298 1.62627 1.19131 0.85295 0.98373 1.31440 0.90494 1.25394 1.01496 0.95356 1.02948 1.69973 1.34436 1.02143 1.52981 0.85291 0.81073 0.77420 0.77009 1.21614 1.19767 1.22303 1.22024 0.89484 0.91279 0.93016 0.96189 0.93956 0.91972 0.75733 0.77996 0.77880 0.89195 0.86112 0.84181 0.83360 0.84111 0.87317 0.93530 0.93199 0.94513 0.96313 0.94112 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.43 8.06 71.98 0.58 -4.85 16 2 C 0.19 6.82 2.76 44.99 0.12 6.94 16 3 H 0.07 2.70 7.58 -2.39 -0.02 2.68 16 4 N -0.71 -21.78 5.07 -446.09 -2.26 -24.04 16 5 C 0.58 19.46 7.77 86.58 0.67 20.13 16 6 O -0.58 -24.16 13.73 -4.15 -0.06 -24.22 16 7 C -0.25 -6.66 6.29 -18.91 -0.12 -6.78 16 8 C 0.07 1.11 11.38 83.87 0.95 2.07 16 9 N -0.53 -5.63 5.88 -193.90 -1.14 -6.76 16 10 H 0.44 1.01 8.96 -92.71 -0.83 0.18 16 11 C 0.02 0.23 11.80 83.43 0.98 1.22 16 12 C -0.12 -2.97 5.79 -18.77 -0.11 -3.08 16 13 C -0.02 -0.57 5.40 -20.05 -0.11 -0.68 16 14 C -0.09 -2.98 7.94 22.49 0.18 -2.80 16 15 C -0.14 -3.88 10.03 22.24 0.22 -3.65 16 16 C -0.13 -2.90 10.04 22.31 0.22 -2.68 16 17 C -0.13 -2.55 10.03 22.24 0.22 -2.33 16 18 C -0.12 -2.59 9.72 22.50 0.22 -2.37 16 19 C -0.13 -4.35 4.25 -10.37 -0.04 -4.39 16 20 C 0.12 4.75 7.86 83.18 0.65 5.40 16 21 N -0.63 -30.91 2.16 -737.93 -1.60 -32.51 16 22 C -0.21 -11.77 9.57 84.03 0.80 -10.97 16 23 H 0.08 4.15 7.84 -2.91 -0.02 4.13 16 24 C -0.06 -3.29 5.50 84.86 0.47 -2.82 16 25 N -0.95 -55.71 11.81 21.65 0.26 -55.45 16 26 Si 0.96 46.13 29.56 68.60 2.03 48.16 16 27 H -0.29 -13.66 7.11 99.48 0.71 -12.95 16 28 H -0.27 -12.59 7.11 99.48 0.71 -11.89 16 29 H -0.30 -14.35 7.11 99.48 0.71 -13.64 16 30 C 0.17 7.36 6.22 83.26 0.52 7.88 16 31 H 0.02 0.86 8.14 -2.39 -0.02 0.84 16 32 H 0.04 2.04 6.32 -2.38 -0.02 2.03 16 33 H 0.06 2.96 5.93 -2.39 -0.01 2.94 16 34 H 0.41 10.05 7.54 -92.70 -0.70 9.35 16 35 H 0.20 2.03 7.44 -2.92 -0.02 2.01 16 36 H 0.20 1.57 8.06 -2.91 -0.02 1.55 16 37 H 0.09 3.29 7.48 -2.91 -0.02 3.26 16 38 H 0.12 3.05 8.06 -2.91 -0.02 3.03 16 39 H 0.14 2.31 8.06 -2.91 -0.02 2.29 16 40 H 0.15 1.96 8.06 -2.91 -0.02 1.94 16 41 H 0.14 2.28 8.06 -2.91 -0.02 2.26 16 42 H 0.11 3.00 8.14 -2.39 -0.02 2.98 16 43 H 0.05 1.77 8.12 -2.39 -0.02 1.75 16 44 H 0.05 1.83 8.14 -2.39 -0.02 1.81 16 45 H 0.25 14.21 8.31 -92.71 -0.77 13.43 16 46 H 0.02 0.86 8.14 -2.39 -0.02 0.84 16 47 H 0.04 1.98 6.17 -2.39 -0.01 1.97 16 Total: -1.00 -78.95 384.47 3.15 -75.80 By element: Atomic # 1 Polarization: 23.31 SS G_CDS: -0.52 Total: 22.79 kcal Atomic # 6 Polarization: -10.21 SS G_CDS: 6.45 Total: -3.76 kcal Atomic # 7 Polarization: -114.02 SS G_CDS: -4.74 Total: -118.77 kcal Atomic # 8 Polarization: -24.16 SS G_CDS: -0.06 Total: -24.22 kcal Atomic # 14 Polarization: 46.13 SS G_CDS: 2.03 Total: 48.16 kcal Total: -78.95 3.15 -75.80 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000970879524.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 156.132 kcal (2) G-P(sol) polarization free energy of solvation -78.948 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.184 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.153 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.796 kcal (6) G-S(sol) free energy of system = (1) + (5) 80.337 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.27 seconds