Wall clock time and date at job start Tue Mar 31 2020 22:33:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08999 * 110.00122 * 2 1 4 4 C 1.54330 * 109.99619 * 238.95426 * 2 1 3 5 5 H 1.09007 * 110.84658 * 100.19794 * 4 2 1 6 6 N 1.46504 * 110.66806 * 337.05058 * 4 2 1 7 7 C 1.36937 * 119.99960 * 97.23730 * 6 4 2 8 8 H 1.08005 * 119.99861 * 0.02562 * 7 6 4 9 9 C 1.38809 * 120.00293 * 180.02562 * 7 6 4 10 10 N 1.31623 * 119.99578 * 0.02562 * 9 7 6 11 11 Si 1.86796 * 120.00471 * 180.02562 * 9 7 6 12 12 H 1.48497 * 109.47170 * 59.99666 * 11 9 7 13 13 H 1.48494 * 109.47287 * 180.02562 * 11 9 7 14 14 H 1.48504 * 109.46889 * 299.99975 * 11 9 7 15 15 C 1.55154 * 103.02598 * 218.66689 * 4 2 1 16 16 C 1.54916 * 101.57996 * 35.30954 * 15 4 2 17 17 N 1.47027 * 109.87774 * 121.08882 * 2 1 3 18 18 C 1.34774 * 125.64895 * 298.39162 * 17 2 1 19 19 O 1.21273 * 120.00161 * 359.45209 * 18 17 2 20 20 C 1.50701 * 119.99878 * 179.71568 * 18 17 2 21 21 C 1.50697 * 109.47414 * 179.72806 * 20 18 17 22 22 C 1.36209 * 120.66934 * 264.72948 * 21 20 18 23 23 N 1.32579 * 121.87466 * 179.74790 * 22 21 20 24 24 C 1.31262 * 122.77706 * 0.54244 * 23 22 21 25 25 C 1.40399 * 119.88015 * 359.72676 * 24 23 22 26 26 C 1.40386 * 122.07794 * 180.02562 * 25 24 23 27 27 C 1.36162 * 119.51492 * 180.02562 * 26 25 24 28 28 C 1.39378 * 121.08963 * 359.95695 * 27 26 25 29 29 C 1.36206 * 121.02523 * 0.02562 * 28 27 26 30 30 C 1.40241 * 119.48437 * 359.97438 * 29 28 27 31 31 H 1.08995 * 109.47632 * 304.35488 * 1 2 3 32 32 H 1.09006 * 109.47051 * 64.35827 * 1 2 3 33 33 H 1.09004 * 109.47019 * 184.34987 * 1 2 3 34 34 H 0.96992 * 119.99933 * 277.23660 * 6 4 2 35 35 H 0.97003 * 119.99536 * 179.97438 * 10 9 7 36 36 H 1.09002 * 111.00771 * 277.23570 * 15 4 2 37 37 H 1.09000 * 111.04015 * 153.39835 * 15 4 2 38 38 H 1.09003 * 110.36570 * 204.15579 * 16 15 4 39 39 H 1.08992 * 110.36823 * 81.82566 * 16 15 4 40 40 H 1.08998 * 109.47553 * 299.73546 * 20 18 17 41 41 H 1.09005 * 109.47114 * 59.72922 * 20 18 17 42 42 H 1.07997 * 119.05927 * 359.97438 * 22 21 20 43 43 H 1.07998 * 120.06178 * 179.71304 * 24 23 22 44 44 H 1.08001 * 120.24357 * 0.02562 * 26 25 24 45 45 H 1.07996 * 119.45625 * 179.97438 * 27 26 25 46 46 H 1.08002 * 119.48839 * 180.02562 * 28 27 26 47 47 H 1.08003 * 120.26467 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9028 1.0242 0.0000 4 6 2.0577 -0.7479 -1.2425 5 1 2.3598 -0.0451 -2.0191 6 7 1.0484 -1.6791 -1.7530 7 6 0.2390 -1.3085 -2.7936 8 1 0.3451 -0.3300 -3.2382 9 6 -0.7177 -2.1905 -3.2770 10 7 -0.8472 -3.3828 -2.7347 11 14 -1.8213 -1.6853 -4.6969 12 1 -0.9873 -1.3740 -5.8855 13 1 -2.7508 -2.7971 -5.0212 14 1 -2.6035 -0.4830 -4.3124 15 6 3.2864 -1.5184 -0.6912 16 6 2.8098 -1.8825 0.7372 17 7 2.0299 -0.7140 1.1841 18 6 1.8072 -0.3618 2.4658 19 8 1.1515 0.6268 2.7179 20 6 2.3781 -1.1930 3.5857 21 6 1.9923 -0.5852 4.9096 22 6 2.8379 0.2639 5.5570 23 7 2.5209 0.8159 6.7200 24 6 1.3843 0.5792 7.3326 25 6 0.4439 -0.2866 6.7520 26 6 -0.7858 -0.5718 7.3664 27 6 -1.6594 -1.4200 6.7569 28 6 -1.3537 -2.0098 5.5316 29 6 -0.1706 -1.7562 4.9061 30 6 0.7540 -0.8876 5.5040 31 1 -0.3634 0.5799 0.8483 32 1 -0.3633 0.4447 -0.9265 33 1 -0.3633 -1.0247 0.0779 34 1 0.9534 -2.5580 -1.3539 35 1 -1.5161 -3.9990 -3.0723 36 1 4.1670 -0.8769 -0.6576 37 1 3.4815 -2.4157 -1.2786 38 1 3.6655 -2.0411 1.3936 39 1 2.1801 -2.7717 0.7118 40 1 1.9839 -2.2073 3.5228 41 1 3.4645 -1.2197 3.5010 42 1 3.7923 0.4969 5.1085 43 1 1.1731 1.0494 8.2816 44 1 -1.0370 -0.1218 8.3155 45 1 -2.6049 -1.6391 7.2305 46 1 -2.0659 -2.6784 5.0710 47 1 0.0534 -2.2196 3.9566 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000986383680.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:33:59 Heat of formation + Delta-G solvation = 37.186239 kcal Electronic energy + Delta-G solvation = -29364.368964 eV Core-core repulsion = 25512.213709 eV Total energy + Delta-G solvation = -3852.155255 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.12260 -39.78264 -37.61191 -37.31569 -34.21678 -34.00632 -31.65822 -31.29713 -30.79300 -30.35737 -29.09335 -27.54946 -25.25387 -24.12882 -23.66502 -23.40634 -22.60634 -21.41707 -19.77402 -18.45583 -18.09336 -17.70003 -17.51162 -16.73187 -16.46516 -15.88034 -15.06539 -14.91391 -14.66412 -14.47964 -14.21056 -14.01003 -13.72705 -13.63651 -13.53714 -13.34510 -12.97068 -12.78434 -12.58846 -12.45998 -12.22851 -12.06091 -11.86437 -11.48200 -11.35549 -11.17394 -10.90670 -10.87911 -10.64502 -10.52935 -10.23732 -10.17127 -10.11389 -9.71085 -9.58764 -9.45302 -9.16731 -8.99270 -8.25615 -8.12366 -7.07977 -5.85854 -3.15044 0.23913 0.81597 1.79210 2.88185 2.94164 3.31565 3.39363 3.44573 3.44900 3.98594 4.21195 4.40609 4.51688 4.57321 4.61881 4.73775 4.77032 4.86986 4.94640 5.00214 5.06666 5.19796 5.26208 5.34513 5.38254 5.47660 5.54763 5.64321 5.68220 5.73301 5.76179 5.83914 5.90163 5.93902 6.07019 6.20783 6.25866 6.27096 6.35896 6.41963 6.50768 6.55332 6.63506 6.71510 6.81581 7.02176 7.30552 7.62185 7.86831 7.89374 8.31634 8.46621 9.43928 9.97399 10.32745 11.36131 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.015423 B = 0.002944 C = 0.002644 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1814.983992 B = 9507.539614 C =10585.855228 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.109 3.891 3 H 0.058 0.942 4 C 0.170 3.830 5 H 0.075 0.925 6 N -0.708 5.708 7 C -0.241 4.241 8 H 0.071 0.929 9 C -0.008 4.008 10 N -0.931 5.931 11 Si 0.905 3.095 12 H -0.286 1.286 13 H -0.291 1.291 14 H -0.285 1.285 15 C -0.146 4.146 16 C 0.100 3.900 17 N -0.605 5.605 18 C 0.526 3.474 19 O -0.536 6.536 20 C -0.098 4.098 21 C -0.090 4.090 22 C 0.084 3.916 23 N -0.485 5.485 24 C 0.138 3.862 25 C -0.111 4.111 26 C -0.091 4.091 27 C -0.119 4.119 28 C -0.099 4.099 29 C -0.104 4.104 30 C -0.008 4.008 31 H 0.038 0.962 32 H 0.066 0.934 33 H 0.064 0.936 34 H 0.385 0.615 35 H 0.256 0.744 36 H 0.071 0.929 37 H 0.087 0.913 38 H 0.067 0.933 39 H 0.070 0.930 40 H 0.103 0.897 41 H 0.104 0.896 42 H 0.150 0.850 43 H 0.161 0.839 44 H 0.132 0.868 45 H 0.126 0.874 46 H 0.128 0.872 47 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.361 1.473 18.703 19.809 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.004 3.996 3 H 0.077 0.923 4 C 0.058 3.942 5 H 0.093 0.907 6 N -0.347 5.347 7 C -0.372 4.372 8 H 0.089 0.911 9 C -0.205 4.205 10 N -0.578 5.578 11 Si 0.736 3.264 12 H -0.212 1.212 13 H -0.217 1.217 14 H -0.212 1.212 15 C -0.185 4.185 16 C -0.023 4.023 17 N -0.339 5.339 18 C 0.313 3.687 19 O -0.413 6.413 20 C -0.139 4.139 21 C -0.092 4.092 22 C -0.060 4.060 23 N -0.192 5.192 24 C -0.033 4.033 25 C -0.113 4.113 26 C -0.111 4.111 27 C -0.137 4.137 28 C -0.118 4.118 29 C -0.122 4.122 30 C -0.013 4.013 31 H 0.057 0.943 32 H 0.085 0.915 33 H 0.083 0.917 34 H 0.219 0.781 35 H 0.066 0.934 36 H 0.089 0.911 37 H 0.105 0.895 38 H 0.085 0.915 39 H 0.089 0.911 40 H 0.122 0.878 41 H 0.123 0.877 42 H 0.167 0.833 43 H 0.178 0.822 44 H 0.149 0.851 45 H 0.144 0.856 46 H 0.146 0.854 47 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 6.594 2.629 18.996 20.279 hybrid contribution -1.381 -0.707 -1.144 1.928 sum 5.213 1.921 17.852 18.696 Atomic orbital electron populations 1.21742 0.93790 1.02673 1.00755 1.22719 0.96111 0.95395 0.85393 0.92343 1.21251 0.88472 0.92231 0.92273 0.90722 1.42311 1.38556 1.15120 1.38739 1.19154 1.11048 0.99127 1.07842 0.91126 1.24711 0.99723 0.96227 0.99799 1.69641 1.37286 1.07021 1.43886 0.86302 0.80475 0.77287 0.82331 1.21234 1.21732 1.21208 1.23160 0.98627 1.01826 0.94889 1.22323 0.94622 0.89093 0.96217 1.48647 1.52031 1.28211 1.05006 1.19919 0.80908 0.85569 0.82254 1.90708 1.40062 1.27400 1.83154 1.20607 1.02924 1.00222 0.90108 1.20037 0.94372 0.98976 0.95819 1.21963 0.99581 0.93268 0.91164 1.67391 1.19576 1.22620 1.09609 1.23123 0.88339 0.93313 0.98539 1.18998 0.96758 0.99918 0.95624 1.20943 0.92598 0.97814 0.99745 1.20925 0.99733 0.97372 0.95660 1.21017 0.96734 0.99016 0.95037 1.21012 0.93874 0.97575 0.99690 1.17965 0.93921 0.95907 0.93529 0.94305 0.91501 0.91688 0.78104 0.93412 0.91068 0.89487 0.91497 0.91146 0.87850 0.87745 0.83299 0.82167 0.85055 0.85634 0.85449 0.85296 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.71 8.08 37.16 0.30 -2.41 16 2 C 0.11 1.97 3.43 -66.95 -0.23 1.74 16 3 H 0.06 1.06 8.14 -51.93 -0.42 0.63 16 4 C 0.17 3.06 3.53 -66.09 -0.23 2.83 16 5 H 0.07 1.35 8.05 -51.93 -0.42 0.93 16 6 N -0.71 -15.92 3.81 -51.64 -0.20 -16.11 16 7 C -0.24 -6.16 8.62 -15.06 -0.13 -6.29 16 8 H 0.07 1.77 7.82 -52.48 -0.41 1.36 16 9 C -0.01 -0.22 5.50 -17.43 -0.10 -0.32 16 10 N -0.93 -26.54 13.06 55.49 0.72 -25.82 16 11 Si 0.91 21.60 29.55 -169.99 -5.02 16.58 16 12 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 13 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 14 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 15 C -0.15 -2.03 6.70 -24.58 -0.16 -2.20 16 16 C 0.10 1.31 6.62 -2.52 -0.02 1.30 16 17 N -0.60 -9.49 3.06 -163.01 -0.50 -9.99 16 18 C 0.53 8.38 7.63 -10.99 -0.08 8.30 16 19 O -0.54 -10.69 15.16 5.56 0.08 -10.60 16 20 C -0.10 -1.16 4.32 -29.04 -0.13 -1.28 16 21 C -0.09 -1.18 4.40 -104.44 -0.46 -1.64 16 22 C 0.08 1.08 10.72 -17.96 -0.19 0.89 16 23 N -0.49 -6.44 10.30 -13.16 -0.14 -6.58 16 24 C 0.14 1.58 11.05 -16.98 -0.19 1.39 16 25 C -0.11 -1.34 5.74 -106.86 -0.61 -1.96 16 26 C -0.09 -0.88 9.81 -39.52 -0.39 -1.27 16 27 C -0.12 -1.14 9.94 -39.90 -0.40 -1.54 16 28 C -0.10 -1.09 9.95 -39.89 -0.40 -1.49 16 29 C -0.10 -1.33 9.33 -39.56 -0.37 -1.70 16 30 C -0.01 -0.11 5.75 -106.81 -0.61 -0.72 16 31 H 0.04 0.81 7.02 -51.93 -0.36 0.45 16 32 H 0.07 1.45 7.32 -51.93 -0.38 1.07 16 33 H 0.06 1.48 7.55 -51.93 -0.39 1.09 16 34 H 0.38 9.26 7.85 -40.82 -0.32 8.94 16 35 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 36 H 0.07 0.86 8.14 -51.93 -0.42 0.43 16 37 H 0.09 1.24 8.14 -51.93 -0.42 0.82 16 38 H 0.07 0.66 7.47 -51.93 -0.39 0.27 16 39 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 40 H 0.10 1.07 6.83 -51.93 -0.35 0.72 16 41 H 0.10 0.94 7.75 -51.93 -0.40 0.54 16 42 H 0.15 1.62 8.05 -52.49 -0.42 1.19 16 43 H 0.16 1.25 8.06 -52.49 -0.42 0.83 16 44 H 0.13 0.86 8.06 -52.49 -0.42 0.43 16 45 H 0.13 0.87 8.06 -52.49 -0.42 0.45 16 46 H 0.13 1.17 8.06 -52.49 -0.42 0.75 16 47 H 0.13 1.62 6.65 -52.48 -0.35 1.27 16 LS Contribution 382.86 15.07 5.77 5.77 Total: -1.00 -32.54 382.86 -10.39 -42.94 By element: Atomic # 1 Polarization: 16.90 SS G_CDS: -6.72 Total: 10.18 kcal Atomic # 6 Polarization: -1.97 SS G_CDS: -4.40 Total: -6.37 kcal Atomic # 7 Polarization: -58.39 SS G_CDS: -0.11 Total: -58.49 kcal Atomic # 8 Polarization: -10.69 SS G_CDS: 0.08 Total: -10.60 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.02 Total: 16.58 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -32.54 -10.39 -42.94 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000986383680.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.123 kcal (2) G-P(sol) polarization free energy of solvation -32.544 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.579 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.393 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.936 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.186 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds