Wall clock time and date at job start Tue Mar 31 2020 22:33:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08999 * 110.00122 * 2 1 4 4 C 1.54330 * 109.99619 * 238.95426 * 2 1 3 5 5 H 1.09007 * 110.84658 * 100.19794 * 4 2 1 6 6 N 1.46504 * 110.66806 * 337.05058 * 4 2 1 7 7 C 1.36937 * 119.99960 * 97.23730 * 6 4 2 8 8 H 1.08005 * 119.99861 * 0.02562 * 7 6 4 9 9 C 1.38809 * 120.00293 * 180.02562 * 7 6 4 10 10 N 1.31623 * 119.99578 * 0.02562 * 9 7 6 11 11 Si 1.86796 * 120.00471 * 180.02562 * 9 7 6 12 12 H 1.48497 * 109.47170 * 59.99666 * 11 9 7 13 13 H 1.48494 * 109.47287 * 180.02562 * 11 9 7 14 14 H 1.48504 * 109.46889 * 299.99975 * 11 9 7 15 15 C 1.55154 * 103.02598 * 218.66689 * 4 2 1 16 16 C 1.54916 * 101.57996 * 35.30954 * 15 4 2 17 17 N 1.47027 * 109.87774 * 121.08882 * 2 1 3 18 18 C 1.34774 * 125.64895 * 298.39162 * 17 2 1 19 19 O 1.21273 * 120.00161 * 359.45209 * 18 17 2 20 20 C 1.50701 * 119.99878 * 179.71568 * 18 17 2 21 21 C 1.50697 * 109.47414 * 179.72806 * 20 18 17 22 22 C 1.36209 * 120.66934 * 264.72948 * 21 20 18 23 23 N 1.32579 * 121.87466 * 179.74790 * 22 21 20 24 24 C 1.31262 * 122.77706 * 0.54244 * 23 22 21 25 25 C 1.40399 * 119.88015 * 359.72676 * 24 23 22 26 26 C 1.40386 * 122.07794 * 180.02562 * 25 24 23 27 27 C 1.36162 * 119.51492 * 180.02562 * 26 25 24 28 28 C 1.39378 * 121.08963 * 359.95695 * 27 26 25 29 29 C 1.36206 * 121.02523 * 0.02562 * 28 27 26 30 30 C 1.40241 * 119.48437 * 359.97438 * 29 28 27 31 31 H 1.08995 * 109.47632 * 304.35488 * 1 2 3 32 32 H 1.09006 * 109.47051 * 64.35827 * 1 2 3 33 33 H 1.09004 * 109.47019 * 184.34987 * 1 2 3 34 34 H 0.96992 * 119.99933 * 277.23660 * 6 4 2 35 35 H 0.97003 * 119.99536 * 179.97438 * 10 9 7 36 36 H 1.09002 * 111.00771 * 277.23570 * 15 4 2 37 37 H 1.09000 * 111.04015 * 153.39835 * 15 4 2 38 38 H 1.09003 * 110.36570 * 204.15579 * 16 15 4 39 39 H 1.08992 * 110.36823 * 81.82566 * 16 15 4 40 40 H 1.08998 * 109.47553 * 299.73546 * 20 18 17 41 41 H 1.09005 * 109.47114 * 59.72922 * 20 18 17 42 42 H 1.07997 * 119.05927 * 359.97438 * 22 21 20 43 43 H 1.07998 * 120.06178 * 179.71304 * 24 23 22 44 44 H 1.08001 * 120.24357 * 0.02562 * 26 25 24 45 45 H 1.07996 * 119.45625 * 179.97438 * 27 26 25 46 46 H 1.08002 * 119.48839 * 180.02562 * 28 27 26 47 47 H 1.08003 * 120.26467 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9028 1.0242 0.0000 4 6 2.0577 -0.7479 -1.2425 5 1 2.3598 -0.0451 -2.0191 6 7 1.0484 -1.6791 -1.7530 7 6 0.2390 -1.3085 -2.7936 8 1 0.3451 -0.3300 -3.2382 9 6 -0.7177 -2.1905 -3.2770 10 7 -0.8472 -3.3828 -2.7347 11 14 -1.8213 -1.6853 -4.6969 12 1 -0.9873 -1.3740 -5.8855 13 1 -2.7508 -2.7971 -5.0212 14 1 -2.6035 -0.4830 -4.3124 15 6 3.2864 -1.5184 -0.6912 16 6 2.8098 -1.8825 0.7372 17 7 2.0299 -0.7140 1.1841 18 6 1.8072 -0.3618 2.4658 19 8 1.1515 0.6268 2.7179 20 6 2.3781 -1.1930 3.5857 21 6 1.9923 -0.5852 4.9096 22 6 2.8379 0.2639 5.5570 23 7 2.5209 0.8159 6.7200 24 6 1.3843 0.5792 7.3326 25 6 0.4439 -0.2866 6.7520 26 6 -0.7858 -0.5718 7.3664 27 6 -1.6594 -1.4200 6.7569 28 6 -1.3537 -2.0098 5.5316 29 6 -0.1706 -1.7562 4.9061 30 6 0.7540 -0.8876 5.5040 31 1 -0.3634 0.5799 0.8483 32 1 -0.3633 0.4447 -0.9265 33 1 -0.3633 -1.0247 0.0779 34 1 0.9534 -2.5580 -1.3539 35 1 -1.5161 -3.9990 -3.0723 36 1 4.1670 -0.8769 -0.6576 37 1 3.4815 -2.4157 -1.2786 38 1 3.6655 -2.0411 1.3936 39 1 2.1801 -2.7717 0.7118 40 1 1.9839 -2.2073 3.5228 41 1 3.4645 -1.2197 3.5010 42 1 3.7923 0.4969 5.1085 43 1 1.1731 1.0494 8.2816 44 1 -1.0370 -0.1218 8.3155 45 1 -2.6049 -1.6391 7.2305 46 1 -2.0659 -2.6784 5.0710 47 1 0.0534 -2.2196 3.9566 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000986383680.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:33:58 Heat of formation + Delta-G solvation = 18.218141 kcal Electronic energy + Delta-G solvation = -29365.191482 eV Core-core repulsion = 25512.213709 eV Total energy + Delta-G solvation = -3852.977774 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -42.03216 -41.04153 -38.89677 -38.23816 -35.74524 -35.15957 -33.31520 -32.23259 -32.11013 -31.36559 -30.56859 -28.63828 -26.81171 -25.33475 -24.95233 -24.52083 -23.78100 -22.41238 -21.12088 -19.76795 -19.35192 -18.91994 -18.54877 -18.02230 -17.46127 -17.13985 -16.45698 -16.11396 -15.83457 -15.50093 -15.41970 -15.27813 -15.13985 -14.88105 -14.71448 -14.43916 -14.37616 -14.00499 -13.78513 -13.61264 -13.21598 -13.09115 -13.05001 -12.89679 -12.77492 -12.67327 -12.41133 -12.29780 -12.24679 -11.98756 -11.84940 -11.70331 -11.49710 -11.16547 -10.94593 -10.70584 -10.47043 -10.03350 -9.58401 -9.01411 -8.96608 -7.91940 -5.18360 -0.61254 -0.06075 0.92419 1.48193 1.49489 1.54584 1.65702 2.01285 2.19221 2.57144 3.08932 3.36916 3.39505 3.57511 3.66714 3.74333 3.76243 3.78354 3.90654 3.93992 4.02322 4.16966 4.19288 4.29891 4.31007 4.37394 4.41452 4.51931 4.56217 4.62415 4.66971 4.78561 4.79374 4.83415 4.93430 5.01421 5.08282 5.12545 5.13572 5.26027 5.32255 5.44911 5.48302 5.50220 5.51717 5.57994 5.66937 5.91625 6.29679 6.65563 6.98195 7.21514 7.37999 8.10895 8.35026 9.30639 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.015423 B = 0.002944 C = 0.002644 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1814.983992 B = 9507.539614 C =10585.855228 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C 0.115 3.885 3 H 0.061 0.939 4 C 0.162 3.838 5 H 0.076 0.924 6 N -0.715 5.715 7 C -0.228 4.228 8 H 0.074 0.926 9 C -0.068 4.068 10 N -0.964 5.964 11 Si 0.959 3.041 12 H -0.278 1.278 13 H -0.299 1.299 14 H -0.286 1.286 15 C -0.132 4.132 16 C 0.100 3.900 17 N -0.605 5.605 18 C 0.523 3.477 19 O -0.582 6.582 20 C -0.086 4.086 21 C -0.109 4.109 22 C 0.073 3.927 23 N -0.510 5.510 24 C 0.141 3.859 25 C -0.132 4.132 26 C -0.084 4.084 27 C -0.125 4.125 28 C -0.101 4.101 29 C -0.133 4.133 30 C -0.031 4.031 31 H 0.027 0.973 32 H 0.049 0.951 33 H 0.037 0.963 34 H 0.376 0.624 35 H 0.249 0.751 36 H 0.101 0.899 37 H 0.087 0.913 38 H 0.113 0.887 39 H 0.060 0.940 40 H 0.116 0.884 41 H 0.139 0.861 42 H 0.164 0.836 43 H 0.196 0.804 44 H 0.168 0.832 45 H 0.157 0.843 46 H 0.140 0.860 47 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.584 1.759 20.373 21.810 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.008 3.992 3 H 0.079 0.921 4 C 0.051 3.949 5 H 0.094 0.906 6 N -0.353 5.353 7 C -0.360 4.360 8 H 0.091 0.909 9 C -0.261 4.261 10 N -0.615 5.615 11 Si 0.790 3.210 12 H -0.204 1.204 13 H -0.226 1.226 14 H -0.212 1.212 15 C -0.170 4.170 16 C -0.022 4.022 17 N -0.338 5.338 18 C 0.313 3.687 19 O -0.463 6.463 20 C -0.126 4.126 21 C -0.111 4.111 22 C -0.070 4.070 23 N -0.217 5.217 24 C -0.030 4.030 25 C -0.134 4.134 26 C -0.103 4.103 27 C -0.143 4.143 28 C -0.120 4.120 29 C -0.151 4.151 30 C -0.036 4.036 31 H 0.046 0.954 32 H 0.068 0.932 33 H 0.056 0.944 34 H 0.208 0.792 35 H 0.057 0.943 36 H 0.120 0.880 37 H 0.106 0.894 38 H 0.131 0.869 39 H 0.078 0.922 40 H 0.134 0.866 41 H 0.157 0.843 42 H 0.182 0.818 43 H 0.212 0.788 44 H 0.186 0.814 45 H 0.174 0.826 46 H 0.158 0.842 47 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 7.872 2.931 20.666 22.307 hybrid contribution -1.797 -0.714 -1.561 2.485 sum 6.074 2.217 19.105 20.170 Atomic orbital electron populations 1.21528 0.96196 1.00295 0.99239 1.22430 0.93964 0.95950 0.86814 0.92132 1.21464 0.89111 0.92137 0.92146 0.90614 1.42394 1.39306 1.15423 1.38199 1.19466 1.10366 0.98686 1.07512 0.90852 1.25348 1.01657 0.96627 1.02426 1.69774 1.38208 1.07991 1.45520 0.85421 0.78901 0.76426 0.80279 1.20377 1.22575 1.21232 1.23089 0.97448 1.01711 0.94783 1.22501 0.95559 0.87451 0.96652 1.48681 1.52056 1.28628 1.04454 1.20651 0.79977 0.85215 0.82823 1.90682 1.42098 1.29647 1.83831 1.20596 1.04702 0.99599 0.87722 1.20179 0.94672 0.99807 0.96458 1.22262 1.00268 0.93077 0.91353 1.67439 1.20631 1.23530 1.10146 1.23722 0.87484 0.92454 0.99318 1.19343 0.98089 1.00367 0.95588 1.21385 0.91286 0.96964 1.00710 1.21300 1.01015 0.96919 0.95060 1.21342 0.96242 0.98794 0.95648 1.21060 0.95081 0.98936 1.00042 1.18276 0.94361 0.96414 0.94519 0.95393 0.93229 0.94377 0.79172 0.94261 0.88027 0.89413 0.86912 0.92170 0.86579 0.84296 0.81846 0.78759 0.81437 0.82562 0.84224 0.86259 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.89 8.08 71.98 0.58 -4.31 16 2 C 0.11 4.11 3.43 45.34 0.16 4.27 16 3 H 0.06 2.16 8.14 -2.39 -0.02 2.14 16 4 C 0.16 5.69 3.53 46.18 0.16 5.85 16 5 H 0.08 2.65 8.05 -2.38 -0.02 2.63 16 6 N -0.72 -32.36 3.81 -317.30 -1.21 -33.57 16 7 C -0.23 -11.79 8.62 84.03 0.72 -11.06 16 8 H 0.07 3.68 7.82 -2.91 -0.02 3.66 16 9 C -0.07 -3.73 5.50 84.86 0.47 -3.26 16 10 N -0.96 -56.33 13.06 21.65 0.28 -56.05 16 11 Si 0.96 45.09 29.55 68.60 2.03 47.12 16 12 H -0.28 -12.54 7.11 99.48 0.71 -11.83 16 13 H -0.30 -14.34 7.11 99.48 0.71 -13.63 16 14 H -0.29 -13.26 7.11 99.48 0.71 -12.55 16 15 C -0.13 -3.32 6.70 31.99 0.21 -3.11 16 16 C 0.10 2.37 6.62 86.86 0.58 2.94 16 17 N -0.61 -18.31 3.06 -788.02 -2.41 -20.73 16 18 C 0.52 16.38 7.63 87.66 0.67 17.05 16 19 O -0.58 -23.59 15.16 -3.01 -0.05 -23.64 16 20 C -0.09 -1.91 4.32 29.10 0.13 -1.78 16 21 C -0.11 -2.81 4.40 -19.75 -0.09 -2.90 16 22 C 0.07 1.83 10.72 84.11 0.90 2.73 16 23 N -0.51 -13.01 10.30 -195.54 -2.01 -15.02 16 24 C 0.14 3.00 11.05 85.30 0.94 3.94 16 25 C -0.13 -3.03 5.74 -21.31 -0.12 -3.15 16 26 C -0.08 -1.42 9.81 22.31 0.22 -1.21 16 27 C -0.13 -2.14 9.94 22.06 0.22 -1.92 16 28 C -0.10 -2.17 9.95 22.07 0.22 -1.95 16 29 C -0.13 -3.46 9.33 22.28 0.21 -3.25 16 30 C -0.03 -0.82 5.75 -21.28 -0.12 -0.95 16 31 H 0.03 1.21 7.02 -2.39 -0.02 1.20 16 32 H 0.05 2.23 7.32 -2.38 -0.02 2.21 16 33 H 0.04 1.80 7.55 -2.38 -0.02 1.78 16 34 H 0.38 18.37 7.85 -92.71 -0.73 17.64 16 35 H 0.25 14.34 8.31 -92.71 -0.77 13.57 16 36 H 0.10 2.01 8.14 -2.39 -0.02 1.99 16 37 H 0.09 2.28 8.14 -2.39 -0.02 2.26 16 38 H 0.11 1.70 7.47 -2.39 -0.02 1.68 16 39 H 0.06 1.58 8.14 -2.39 -0.02 1.56 16 40 H 0.12 2.27 6.83 -2.39 -0.02 2.25 16 41 H 0.14 2.04 7.75 -2.38 -0.02 2.02 16 42 H 0.16 3.34 8.05 -2.91 -0.02 3.31 16 43 H 0.20 2.48 8.06 -2.91 -0.02 2.46 16 44 H 0.17 1.51 8.06 -2.91 -0.02 1.49 16 45 H 0.16 1.65 8.06 -2.91 -0.02 1.63 16 46 H 0.14 2.50 8.06 -2.91 -0.02 2.48 16 47 H 0.12 3.15 6.65 -2.91 -0.02 3.13 16 Total: -1.00 -73.81 382.86 2.94 -70.87 By element: Atomic # 1 Polarization: 32.83 SS G_CDS: 0.26 Total: 33.09 kcal Atomic # 6 Polarization: -8.12 SS G_CDS: 6.05 Total: -2.07 kcal Atomic # 7 Polarization: -120.02 SS G_CDS: -5.35 Total: -125.37 kcal Atomic # 8 Polarization: -23.59 SS G_CDS: -0.05 Total: -23.64 kcal Atomic # 14 Polarization: 45.09 SS G_CDS: 2.03 Total: 47.12 kcal Total: -73.81 2.94 -70.87 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000986383680.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.087 kcal (2) G-P(sol) polarization free energy of solvation -73.811 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.275 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.943 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.868 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.218 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds