Wall clock time and date at job start Tue Mar 31 2020 22:34:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09007 * 110.00310 * 2 1 4 4 C 1.54342 * 109.99253 * 238.96095 * 2 1 3 5 5 H 1.08998 * 110.66133 * 337.05157 * 4 2 1 6 6 N 1.46500 * 110.84915 * 100.19400 * 4 2 1 7 7 C 1.36934 * 120.00347 * 200.14617 * 6 4 2 8 8 H 1.08004 * 119.99594 * 0.02562 * 7 6 4 9 9 C 1.38812 * 120.00362 * 180.02562 * 7 6 4 10 10 N 1.31620 * 119.99684 * 359.97438 * 9 7 6 11 11 Si 1.86801 * 119.99955 * 180.02562 * 9 7 6 12 12 H 1.48499 * 109.47111 * 89.99955 * 11 9 7 13 13 H 1.48505 * 109.46701 * 210.00019 * 11 9 7 14 14 H 1.48497 * 109.47044 * 329.99509 * 11 9 7 15 15 C 1.55153 * 103.02323 * 218.66875 * 4 2 1 16 16 C 1.54910 * 101.58095 * 35.30336 * 15 4 2 17 17 N 1.47025 * 109.88291 * 121.09636 * 2 1 3 18 18 C 1.34776 * 125.64797 * 298.38908 * 17 2 1 19 19 O 1.21278 * 119.99655 * 359.72001 * 18 17 2 20 20 C 1.50697 * 119.99784 * 179.71546 * 18 17 2 21 21 C 1.50706 * 109.46931 * 180.02562 * 20 18 17 22 22 C 1.36216 * 120.66254 * 265.00106 * 21 20 18 23 23 N 1.32576 * 121.87414 * 180.02562 * 22 21 20 24 24 C 1.31269 * 122.77245 * 359.97438 * 23 22 21 25 25 C 1.40386 * 119.88661 * 0.02562 * 24 23 22 26 26 C 1.40388 * 122.07571 * 179.97438 * 25 24 23 27 27 C 1.36167 * 119.51210 * 180.02562 * 26 25 24 28 28 C 1.39377 * 121.08816 * 359.97438 * 27 26 25 29 29 C 1.36214 * 121.02894 * 359.97438 * 28 27 26 30 30 C 1.40237 * 119.47784 * 359.76862 * 29 28 27 31 31 H 1.09003 * 109.46969 * 300.36061 * 1 2 3 32 32 H 1.08998 * 109.46894 * 60.35742 * 1 2 3 33 33 H 1.08989 * 109.47257 * 180.35746 * 1 2 3 34 34 H 0.97005 * 119.99679 * 20.15248 * 6 4 2 35 35 H 0.97000 * 119.99867 * 180.02562 * 10 9 7 36 36 H 1.09002 * 111.00139 * 277.22890 * 15 4 2 37 37 H 1.08993 * 111.03531 * 153.39382 * 15 4 2 38 38 H 1.09004 * 110.36768 * 204.15016 * 16 15 4 39 39 H 1.09005 * 110.36573 * 81.83424 * 16 15 4 40 40 H 1.08998 * 109.47496 * 60.00525 * 20 18 17 41 41 H 1.09005 * 109.47284 * 300.00061 * 20 18 17 42 42 H 1.08002 * 119.06240 * 359.97438 * 22 21 20 43 43 H 1.08004 * 120.05688 * 180.02562 * 24 23 22 44 44 H 1.08001 * 120.24077 * 0.04409 * 26 25 24 45 45 H 1.08004 * 119.45332 * 179.97438 * 27 26 25 46 46 H 1.08001 * 119.48504 * 180.02562 * 28 27 26 47 47 H 1.08005 * 120.26230 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9029 1.0243 0.0000 4 6 2.0577 -0.7479 -1.2427 5 1 1.3066 -1.4405 -1.6225 6 7 2.4636 0.1967 -2.2864 7 6 2.5654 -0.2213 -3.5863 8 1 2.3460 -1.2474 -3.8423 9 6 2.9506 0.6736 -4.5751 10 7 3.2175 1.9241 -4.2632 11 14 3.0888 0.1033 -6.3486 12 1 1.7844 0.2930 -7.0326 13 1 4.1327 0.8982 -7.0442 14 1 3.4593 -1.3343 -6.3788 15 6 3.2863 -1.5185 -0.6915 16 6 2.8099 -1.8825 0.7368 17 7 2.0300 -0.7141 1.1839 18 6 1.8075 -0.3620 2.4657 19 8 1.1476 0.6238 2.7179 20 6 2.3785 -1.1934 3.5854 21 6 1.9865 -0.5897 4.9095 22 6 2.8249 0.2657 5.5583 23 7 2.5048 0.8100 6.7240 24 6 1.3674 0.5677 7.3330 25 6 0.4321 -0.3008 6.7484 26 6 -0.7977 -0.5927 7.3594 27 6 -1.6662 -1.4434 6.7460 28 6 -1.3550 -2.0294 5.5204 29 6 -0.1718 -1.7687 4.8977 30 6 0.7452 -0.8932 5.4970 31 1 -0.3633 0.5194 0.8868 32 1 -0.3633 0.5083 -0.8932 33 1 -0.3633 -1.0275 0.0064 34 1 2.6604 1.1184 -2.0564 35 1 3.4863 2.5496 -4.9542 36 1 4.1669 -0.8770 -0.6580 37 1 3.4812 -2.4156 -1.2789 38 1 3.6655 -2.0413 1.3932 39 1 2.1801 -2.7719 0.7115 40 1 3.4651 -1.2160 3.5035 41 1 1.9879 -2.2089 3.5196 42 1 3.7778 0.5067 5.1108 43 1 1.1515 1.0358 8.2821 44 1 -1.0531 -0.1456 8.3087 45 1 -2.6119 -1.6676 7.2171 46 1 -2.0632 -2.7001 5.0567 47 1 0.0564 -2.2294 3.9479 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000986383682.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:34:02 Heat of formation + Delta-G solvation = 33.883186 kcal Electronic energy + Delta-G solvation = -28859.791435 eV Core-core repulsion = 25007.492948 eV Total energy + Delta-G solvation = -3852.298486 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.22444 -39.89292 -37.66499 -37.37801 -34.32417 -34.14660 -31.80518 -31.39706 -30.97123 -30.47019 -29.31142 -27.73717 -25.25024 -24.23957 -23.76518 -23.13048 -22.72622 -21.46261 -20.11015 -18.80489 -18.19285 -17.78691 -17.29733 -16.91578 -16.56389 -16.01351 -15.14818 -15.10931 -14.74760 -14.53489 -14.43270 -14.04920 -13.80310 -13.67478 -13.53487 -13.40784 -13.03791 -12.88900 -12.66770 -12.36043 -12.31824 -12.15399 -12.00393 -11.78492 -11.63834 -11.28646 -11.20407 -11.06841 -10.86215 -10.63084 -10.30665 -10.28438 -10.04970 -9.79920 -9.66447 -9.56452 -9.27483 -8.97953 -8.44360 -8.22513 -7.06523 -5.84402 -3.15129 0.13816 0.71773 1.68679 2.73199 2.83703 3.12698 3.38885 3.44045 3.45959 3.88580 4.12142 4.32232 4.47440 4.50959 4.52026 4.61232 4.65042 4.76800 4.87688 4.95347 4.98537 5.06799 5.22312 5.25486 5.31915 5.37936 5.44247 5.53082 5.55159 5.62480 5.65381 5.74565 5.79283 5.83977 5.89847 6.05042 6.09676 6.13855 6.22770 6.26004 6.40959 6.42224 6.54445 6.57575 6.60387 6.69439 6.88818 7.62444 7.71508 7.80447 8.29791 8.33209 9.44272 9.98681 10.33231 11.37750 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.023467 B = 0.002327 C = 0.002256 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1192.895589 B =12027.565504 C =12407.400663 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.128 3.872 3 H 0.077 0.923 4 C 0.177 3.823 5 H 0.064 0.936 6 N -0.715 5.715 7 C -0.244 4.244 8 H 0.072 0.928 9 C -0.010 4.010 10 N -0.930 5.930 11 Si 0.908 3.092 12 H -0.289 1.289 13 H -0.291 1.291 14 H -0.281 1.281 15 C -0.156 4.156 16 C 0.097 3.903 17 N -0.609 5.609 18 C 0.527 3.473 19 O -0.533 6.533 20 C -0.096 4.096 21 C -0.094 4.094 22 C 0.088 3.912 23 N -0.484 5.484 24 C 0.140 3.860 25 C -0.112 4.112 26 C -0.088 4.088 27 C -0.122 4.122 28 C -0.099 4.099 29 C -0.106 4.106 30 C -0.007 4.007 31 H 0.060 0.940 32 H 0.069 0.931 33 H 0.049 0.951 34 H 0.386 0.614 35 H 0.257 0.743 36 H 0.076 0.924 37 H 0.076 0.924 38 H 0.069 0.931 39 H 0.065 0.935 40 H 0.107 0.893 41 H 0.103 0.897 42 H 0.151 0.849 43 H 0.162 0.838 44 H 0.132 0.868 45 H 0.126 0.874 46 H 0.126 0.874 47 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.746 -10.882 23.535 26.558 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.024 3.976 3 H 0.095 0.905 4 C 0.065 3.935 5 H 0.082 0.918 6 N -0.356 5.356 7 C -0.375 4.375 8 H 0.090 0.910 9 C -0.207 4.207 10 N -0.577 5.577 11 Si 0.739 3.261 12 H -0.216 1.216 13 H -0.217 1.217 14 H -0.207 1.207 15 C -0.197 4.197 16 C -0.027 4.027 17 N -0.344 5.344 18 C 0.315 3.685 19 O -0.409 6.409 20 C -0.137 4.137 21 C -0.097 4.097 22 C -0.055 4.055 23 N -0.191 5.191 24 C -0.031 4.031 25 C -0.114 4.114 26 C -0.108 4.108 27 C -0.140 4.140 28 C -0.118 4.118 29 C -0.124 4.124 30 C -0.012 4.012 31 H 0.079 0.921 32 H 0.088 0.912 33 H 0.068 0.932 34 H 0.220 0.780 35 H 0.067 0.933 36 H 0.094 0.906 37 H 0.095 0.905 38 H 0.087 0.913 39 H 0.083 0.917 40 H 0.125 0.875 41 H 0.121 0.879 42 H 0.169 0.831 43 H 0.179 0.821 44 H 0.150 0.850 45 H 0.144 0.856 46 H 0.144 0.856 47 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -5.398 -9.831 23.819 26.328 hybrid contribution -0.370 -0.576 -1.471 1.623 sum -5.769 -10.407 22.348 25.318 Atomic orbital electron populations 1.22031 0.94930 1.01495 1.02707 1.21895 0.94344 0.96947 0.84393 0.90510 1.21232 0.93488 0.91593 0.87188 0.91829 1.42349 1.80744 1.09300 1.03159 1.19186 1.39216 0.95256 0.83831 0.91007 1.24774 1.02037 0.95660 0.98187 1.69666 1.52283 1.03130 1.32619 0.86180 0.77373 0.77610 0.84925 1.21634 1.21741 1.20694 1.23565 1.01447 1.01758 0.92924 1.22417 0.94652 0.88203 0.97402 1.48590 1.52354 1.28528 1.04890 1.19965 0.80898 0.85541 0.82132 1.90724 1.39838 1.27263 1.83119 1.20584 1.03166 0.99992 0.89944 1.20030 0.94421 0.99250 0.95950 1.22027 0.99684 0.92839 0.90973 1.67420 1.19348 1.22656 1.09635 1.23162 0.88297 0.93082 0.98588 1.19004 0.96811 1.00017 0.95558 1.20966 0.92521 0.97541 0.99725 1.20913 0.99808 0.97547 0.95690 1.20981 0.96628 0.99066 0.95143 1.20961 0.94035 0.97717 0.99714 1.17948 0.93844 0.95868 0.93518 0.92054 0.91175 0.93162 0.77985 0.93338 0.90578 0.90541 0.91264 0.91673 0.87504 0.87872 0.83133 0.82088 0.84995 0.85637 0.85603 0.85477 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.54 9.11 37.16 0.34 -2.20 16 2 C 0.13 2.22 3.21 -66.94 -0.21 2.00 16 3 H 0.08 1.53 7.69 -51.93 -0.40 1.13 16 4 C 0.18 3.28 3.12 -66.09 -0.21 3.08 16 5 H 0.06 1.18 7.83 -51.93 -0.41 0.78 16 6 N -0.72 -17.11 5.25 -51.64 -0.27 -17.38 16 7 C -0.24 -6.46 9.98 -15.06 -0.15 -6.61 16 8 H 0.07 1.83 7.83 -52.48 -0.41 1.42 16 9 C -0.01 -0.28 5.50 -17.43 -0.10 -0.37 16 10 N -0.93 -27.51 13.06 55.49 0.72 -26.79 16 11 Si 0.91 21.75 29.55 -169.99 -5.02 16.73 16 12 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 13 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 14 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 15 C -0.16 -2.42 6.77 -24.58 -0.17 -2.58 16 16 C 0.10 1.15 6.69 -2.53 -0.02 1.14 16 17 N -0.61 -8.87 3.06 -163.00 -0.50 -9.37 16 18 C 0.53 7.72 7.63 -10.99 -0.08 7.63 16 19 O -0.53 -9.94 15.08 5.56 0.08 -9.86 16 20 C -0.10 -1.01 4.31 -29.03 -0.13 -1.14 16 21 C -0.09 -1.14 4.40 -104.44 -0.46 -1.60 16 22 C 0.09 1.10 10.72 -17.96 -0.19 0.90 16 23 N -0.48 -6.18 10.30 -13.16 -0.14 -6.31 16 24 C 0.14 1.49 11.05 -16.98 -0.19 1.31 16 25 C -0.11 -1.22 5.74 -106.86 -0.61 -1.84 16 26 C -0.09 -0.74 9.81 -39.52 -0.39 -1.12 16 27 C -0.12 -0.96 9.94 -39.90 -0.40 -1.36 16 28 C -0.10 -0.87 9.95 -39.89 -0.40 -1.27 16 29 C -0.11 -1.12 9.33 -39.56 -0.37 -1.49 16 30 C -0.01 -0.08 5.75 -106.82 -0.61 -0.69 16 31 H 0.06 1.07 6.89 -51.93 -0.36 0.71 16 32 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 33 H 0.05 0.75 8.14 -51.94 -0.42 0.32 16 34 H 0.39 10.04 7.51 -40.82 -0.31 9.73 16 35 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 36 H 0.08 1.31 8.14 -51.93 -0.42 0.89 16 37 H 0.08 1.13 8.14 -51.93 -0.42 0.71 16 38 H 0.07 0.66 7.48 -51.93 -0.39 0.27 16 39 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 40 H 0.11 0.90 7.76 -51.93 -0.40 0.49 16 41 H 0.10 0.85 6.83 -51.93 -0.35 0.50 16 42 H 0.15 1.62 8.05 -52.49 -0.42 1.19 16 43 H 0.16 1.15 8.06 -52.48 -0.42 0.72 16 44 H 0.13 0.71 8.06 -52.49 -0.42 0.29 16 45 H 0.13 0.66 8.06 -52.48 -0.42 0.24 16 46 H 0.13 0.82 8.06 -52.49 -0.42 0.40 16 47 H 0.13 1.22 6.65 -52.48 -0.35 0.87 16 LS Contribution 386.41 15.07 5.82 5.82 Total: -1.00 -33.56 386.41 -10.38 -43.94 By element: Atomic # 1 Polarization: 16.17 SS G_CDS: -6.74 Total: 9.43 kcal Atomic # 6 Polarization: -1.88 SS G_CDS: -4.34 Total: -6.22 kcal Atomic # 7 Polarization: -59.67 SS G_CDS: -0.18 Total: -59.85 kcal Atomic # 8 Polarization: -9.94 SS G_CDS: 0.08 Total: -9.86 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -5.02 Total: 16.73 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -33.56 -10.38 -43.94 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000986383682.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.819 kcal (2) G-P(sol) polarization free energy of solvation -33.561 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.259 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.375 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.936 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.883 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds