Wall clock time and date at job start Tue Mar 31 2020 22:34:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09007 * 110.00310 * 2 1 4 4 C 1.54342 * 109.99253 * 238.96095 * 2 1 3 5 5 H 1.08998 * 110.66133 * 337.05157 * 4 2 1 6 6 N 1.46500 * 110.84915 * 100.19400 * 4 2 1 7 7 C 1.36934 * 120.00347 * 200.14617 * 6 4 2 8 8 H 1.08004 * 119.99594 * 0.02562 * 7 6 4 9 9 C 1.38812 * 120.00362 * 180.02562 * 7 6 4 10 10 N 1.31620 * 119.99684 * 359.97438 * 9 7 6 11 11 Si 1.86801 * 119.99955 * 180.02562 * 9 7 6 12 12 H 1.48499 * 109.47111 * 89.99955 * 11 9 7 13 13 H 1.48505 * 109.46701 * 210.00019 * 11 9 7 14 14 H 1.48497 * 109.47044 * 329.99509 * 11 9 7 15 15 C 1.55153 * 103.02323 * 218.66875 * 4 2 1 16 16 C 1.54910 * 101.58095 * 35.30336 * 15 4 2 17 17 N 1.47025 * 109.88291 * 121.09636 * 2 1 3 18 18 C 1.34776 * 125.64797 * 298.38908 * 17 2 1 19 19 O 1.21278 * 119.99655 * 359.72001 * 18 17 2 20 20 C 1.50697 * 119.99784 * 179.71546 * 18 17 2 21 21 C 1.50706 * 109.46931 * 180.02562 * 20 18 17 22 22 C 1.36216 * 120.66254 * 265.00106 * 21 20 18 23 23 N 1.32576 * 121.87414 * 180.02562 * 22 21 20 24 24 C 1.31269 * 122.77245 * 359.97438 * 23 22 21 25 25 C 1.40386 * 119.88661 * 0.02562 * 24 23 22 26 26 C 1.40388 * 122.07571 * 179.97438 * 25 24 23 27 27 C 1.36167 * 119.51210 * 180.02562 * 26 25 24 28 28 C 1.39377 * 121.08816 * 359.97438 * 27 26 25 29 29 C 1.36214 * 121.02894 * 359.97438 * 28 27 26 30 30 C 1.40237 * 119.47784 * 359.76862 * 29 28 27 31 31 H 1.09003 * 109.46969 * 300.36061 * 1 2 3 32 32 H 1.08998 * 109.46894 * 60.35742 * 1 2 3 33 33 H 1.08989 * 109.47257 * 180.35746 * 1 2 3 34 34 H 0.97005 * 119.99679 * 20.15248 * 6 4 2 35 35 H 0.97000 * 119.99867 * 180.02562 * 10 9 7 36 36 H 1.09002 * 111.00139 * 277.22890 * 15 4 2 37 37 H 1.08993 * 111.03531 * 153.39382 * 15 4 2 38 38 H 1.09004 * 110.36768 * 204.15016 * 16 15 4 39 39 H 1.09005 * 110.36573 * 81.83424 * 16 15 4 40 40 H 1.08998 * 109.47496 * 60.00525 * 20 18 17 41 41 H 1.09005 * 109.47284 * 300.00061 * 20 18 17 42 42 H 1.08002 * 119.06240 * 359.97438 * 22 21 20 43 43 H 1.08004 * 120.05688 * 180.02562 * 24 23 22 44 44 H 1.08001 * 120.24077 * 0.04409 * 26 25 24 45 45 H 1.08004 * 119.45332 * 179.97438 * 27 26 25 46 46 H 1.08001 * 119.48504 * 180.02562 * 28 27 26 47 47 H 1.08005 * 120.26230 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9029 1.0243 0.0000 4 6 2.0577 -0.7479 -1.2427 5 1 1.3066 -1.4405 -1.6225 6 7 2.4636 0.1967 -2.2864 7 6 2.5654 -0.2213 -3.5863 8 1 2.3460 -1.2474 -3.8423 9 6 2.9506 0.6736 -4.5751 10 7 3.2175 1.9241 -4.2632 11 14 3.0888 0.1033 -6.3486 12 1 1.7844 0.2930 -7.0326 13 1 4.1327 0.8982 -7.0442 14 1 3.4593 -1.3343 -6.3788 15 6 3.2863 -1.5185 -0.6915 16 6 2.8099 -1.8825 0.7368 17 7 2.0300 -0.7141 1.1839 18 6 1.8075 -0.3620 2.4657 19 8 1.1476 0.6238 2.7179 20 6 2.3785 -1.1934 3.5854 21 6 1.9865 -0.5897 4.9095 22 6 2.8249 0.2657 5.5583 23 7 2.5048 0.8100 6.7240 24 6 1.3674 0.5677 7.3330 25 6 0.4321 -0.3008 6.7484 26 6 -0.7977 -0.5927 7.3594 27 6 -1.6662 -1.4434 6.7460 28 6 -1.3550 -2.0294 5.5204 29 6 -0.1718 -1.7687 4.8977 30 6 0.7452 -0.8932 5.4970 31 1 -0.3633 0.5194 0.8868 32 1 -0.3633 0.5083 -0.8932 33 1 -0.3633 -1.0275 0.0064 34 1 2.6604 1.1184 -2.0564 35 1 3.4863 2.5496 -4.9542 36 1 4.1669 -0.8770 -0.6580 37 1 3.4812 -2.4156 -1.2789 38 1 3.6655 -2.0413 1.3932 39 1 2.1801 -2.7719 0.7115 40 1 3.4651 -1.2160 3.5035 41 1 1.9879 -2.2089 3.5196 42 1 3.7778 0.5067 5.1108 43 1 1.1515 1.0358 8.2821 44 1 -1.0531 -0.1456 8.3087 45 1 -2.6119 -1.6676 7.2171 46 1 -2.0632 -2.7001 5.0567 47 1 0.0564 -2.2294 3.9479 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000986383682.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:34:01 Heat of formation + Delta-G solvation = 13.432455 kcal Electronic energy + Delta-G solvation = -28860.678245 eV Core-core repulsion = 25007.492948 eV Total energy + Delta-G solvation = -3853.185296 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -42.03280 -41.05849 -38.85326 -38.21972 -35.91255 -35.17483 -33.40866 -32.34290 -32.11411 -31.36594 -30.72320 -28.69878 -26.85762 -25.10543 -24.75993 -24.50008 -23.83036 -22.39247 -21.50328 -20.03495 -19.11357 -18.90583 -18.53420 -18.10405 -17.44791 -17.18135 -16.57159 -16.19775 -15.80061 -15.54629 -15.47076 -15.27309 -15.03524 -14.76582 -14.65513 -14.52502 -14.39503 -13.90065 -13.69230 -13.60286 -13.34616 -13.13293 -13.06990 -12.94586 -12.87687 -12.66242 -12.63627 -12.53253 -12.18335 -12.07297 -11.94792 -11.71532 -11.53732 -11.17223 -10.92647 -10.72823 -10.45784 -10.00738 -9.66222 -9.03230 -8.97223 -7.94387 -5.24472 -0.59665 -0.03612 0.94374 1.48924 1.50478 1.58693 1.61762 1.92783 2.17082 2.57276 3.09982 3.36308 3.38187 3.55421 3.58646 3.75701 3.77417 3.80247 3.86371 3.95882 4.02452 4.11404 4.19307 4.23203 4.33711 4.36416 4.38322 4.43767 4.51703 4.56148 4.65116 4.66205 4.77718 4.81334 4.93456 4.95555 5.04142 5.11435 5.15355 5.20575 5.25000 5.34520 5.47570 5.48449 5.51992 5.55048 5.67852 5.95109 6.25918 6.58190 6.99193 7.16003 7.32084 8.04603 8.28006 9.29314 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.023467 B = 0.002327 C = 0.002256 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1192.895589 B =12027.565504 C =12407.400663 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.134 3.866 3 H 0.039 0.961 4 C 0.170 3.830 5 H 0.070 0.930 6 N -0.731 5.731 7 C -0.234 4.234 8 H 0.085 0.915 9 C -0.078 4.078 10 N -0.973 5.973 11 Si 0.973 3.027 12 H -0.290 1.290 13 H -0.300 1.300 14 H -0.264 1.264 15 C -0.149 4.149 16 C 0.103 3.897 17 N -0.609 5.609 18 C 0.526 3.474 19 O -0.580 6.580 20 C -0.085 4.085 21 C -0.108 4.108 22 C 0.067 3.933 23 N -0.514 5.514 24 C 0.138 3.862 25 C -0.132 4.132 26 C -0.088 4.088 27 C -0.124 4.124 28 C -0.097 4.097 29 C -0.130 4.130 30 C -0.030 4.030 31 H 0.048 0.952 32 H 0.054 0.946 33 H 0.072 0.928 34 H 0.370 0.630 35 H 0.250 0.750 36 H 0.054 0.946 37 H 0.090 0.910 38 H 0.104 0.896 39 H 0.098 0.902 40 H 0.132 0.868 41 H 0.132 0.868 42 H 0.156 0.844 43 H 0.192 0.808 44 H 0.163 0.837 45 H 0.156 0.844 46 H 0.149 0.851 47 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.768 -14.158 25.083 29.588 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.029 3.971 3 H 0.057 0.943 4 C 0.061 3.939 5 H 0.088 0.912 6 N -0.370 5.370 7 C -0.366 4.366 8 H 0.102 0.898 9 C -0.270 4.270 10 N -0.624 5.624 11 Si 0.803 3.197 12 H -0.217 1.217 13 H -0.227 1.227 14 H -0.188 1.188 15 C -0.189 4.189 16 C -0.019 4.019 17 N -0.342 5.342 18 C 0.316 3.684 19 O -0.460 6.460 20 C -0.124 4.124 21 C -0.110 4.110 22 C -0.076 4.076 23 N -0.222 5.222 24 C -0.033 4.033 25 C -0.134 4.134 26 C -0.108 4.108 27 C -0.142 4.142 28 C -0.116 4.116 29 C -0.147 4.147 30 C -0.035 4.035 31 H 0.067 0.933 32 H 0.073 0.927 33 H 0.091 0.909 34 H 0.201 0.799 35 H 0.058 0.942 36 H 0.073 0.927 37 H 0.108 0.892 38 H 0.122 0.878 39 H 0.116 0.884 40 H 0.150 0.850 41 H 0.150 0.850 42 H 0.173 0.827 43 H 0.209 0.791 44 H 0.180 0.820 45 H 0.174 0.826 46 H 0.167 0.833 47 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -6.416 -13.196 25.398 29.332 hybrid contribution -0.176 0.417 -1.816 1.871 sum -6.592 -12.779 23.582 27.620 Atomic orbital electron populations 1.21907 0.94376 1.02430 1.01319 1.21567 0.94695 0.95293 0.85531 0.94301 1.21441 0.95066 0.91021 0.86389 0.91205 1.42545 1.81158 1.09513 1.03806 1.19616 1.36638 0.95491 0.84810 0.89764 1.25596 1.03258 0.95884 1.02259 1.69840 1.54722 1.04423 1.33373 0.85136 0.76742 0.77784 0.80072 1.21685 1.22734 1.18807 1.23378 0.98828 1.01204 0.95519 1.22601 0.96111 0.87823 0.95324 1.48626 1.52447 1.28969 1.04186 1.20708 0.79960 0.85164 0.82578 1.90705 1.42008 1.29495 1.83755 1.20603 1.04412 1.00173 0.87252 1.20182 0.94725 0.99585 0.96540 1.22233 1.00401 0.93479 0.91488 1.67419 1.20662 1.23797 1.10293 1.23713 0.87615 0.92628 0.99353 1.19327 0.98017 1.00350 0.95721 1.21357 0.91396 0.97273 1.00733 1.21333 1.00835 0.96698 0.95329 1.21377 0.96248 0.98650 0.95311 1.21120 0.94790 0.98432 1.00396 1.18278 0.94254 0.96616 0.94329 0.93265 0.92684 0.90937 0.79874 0.94163 0.92744 0.89180 0.87758 0.88408 0.85044 0.84983 0.82654 0.79126 0.81980 0.82586 0.83320 0.84986 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.74 9.11 71.98 0.66 -4.08 16 2 C 0.13 4.70 3.21 45.35 0.15 4.84 16 3 H 0.04 1.66 7.69 -2.38 -0.02 1.64 16 4 C 0.17 6.24 3.12 46.18 0.14 6.39 16 5 H 0.07 2.49 7.83 -2.39 -0.02 2.47 16 6 N -0.73 -35.73 5.25 -317.31 -1.67 -37.39 16 7 C -0.23 -12.40 9.98 84.03 0.84 -11.57 16 8 H 0.08 4.17 7.83 -2.91 -0.02 4.15 16 9 C -0.08 -4.39 5.50 84.86 0.47 -3.92 16 10 N -0.97 -59.58 13.06 21.65 0.28 -59.30 16 11 Si 0.97 45.14 29.55 68.60 2.03 47.16 16 12 H -0.29 -13.30 7.11 99.48 0.71 -12.60 16 13 H -0.30 -14.25 7.11 99.48 0.71 -13.54 16 14 H -0.26 -11.30 7.11 99.48 0.71 -10.59 16 15 C -0.15 -4.33 6.77 31.98 0.22 -4.12 16 16 C 0.10 2.10 6.69 86.86 0.58 2.68 16 17 N -0.61 -16.84 3.06 -788.01 -2.41 -19.26 16 18 C 0.53 14.92 7.63 87.66 0.67 15.59 16 19 O -0.58 -22.07 15.08 -3.02 -0.05 -22.12 16 20 C -0.08 -1.61 4.31 29.10 0.13 -1.48 16 21 C -0.11 -2.55 4.40 -19.74 -0.09 -2.64 16 22 C 0.07 1.68 10.72 84.11 0.90 2.58 16 23 N -0.51 -13.24 10.30 -195.54 -2.01 -15.25 16 24 C 0.14 2.85 11.05 85.30 0.94 3.79 16 25 C -0.13 -2.74 5.74 -21.31 -0.12 -2.86 16 26 C -0.09 -1.25 9.81 22.31 0.22 -1.04 16 27 C -0.12 -1.58 9.94 22.06 0.22 -1.36 16 28 C -0.10 -1.45 9.95 22.07 0.22 -1.23 16 29 C -0.13 -2.52 9.33 22.28 0.21 -2.31 16 30 C -0.03 -0.69 5.75 -21.29 -0.12 -0.81 16 31 H 0.05 1.75 6.89 -2.39 -0.02 1.73 16 32 H 0.05 1.96 8.14 -2.39 -0.02 1.94 16 33 H 0.07 2.05 8.14 -2.39 -0.02 2.03 16 34 H 0.37 20.21 7.51 -92.70 -0.70 19.51 16 35 H 0.25 14.92 8.31 -92.71 -0.77 14.15 16 36 H 0.05 1.83 8.14 -2.39 -0.02 1.81 16 37 H 0.09 2.40 8.14 -2.39 -0.02 2.38 16 38 H 0.10 1.49 7.48 -2.38 -0.02 1.47 16 39 H 0.10 1.47 8.14 -2.38 -0.02 1.45 16 40 H 0.13 1.82 7.76 -2.39 -0.02 1.80 16 41 H 0.13 1.73 6.83 -2.38 -0.02 1.71 16 42 H 0.16 3.43 8.05 -2.91 -0.02 3.41 16 43 H 0.19 2.42 8.06 -2.91 -0.02 2.39 16 44 H 0.16 1.19 8.06 -2.91 -0.02 1.17 16 45 H 0.16 0.99 8.06 -2.91 -0.02 0.97 16 46 H 0.15 1.45 8.06 -2.91 -0.02 1.42 16 47 H 0.13 2.27 6.65 -2.91 -0.02 2.25 16 Total: -1.00 -77.27 386.41 2.68 -74.58 By element: Atomic # 1 Polarization: 32.83 SS G_CDS: 0.29 Total: 33.12 kcal Atomic # 6 Polarization: -7.77 SS G_CDS: 6.22 Total: -1.55 kcal Atomic # 7 Polarization: -125.39 SS G_CDS: -5.81 Total: -131.20 kcal Atomic # 8 Polarization: -22.07 SS G_CDS: -0.05 Total: -22.12 kcal Atomic # 14 Polarization: 45.14 SS G_CDS: 2.03 Total: 47.16 kcal Total: -77.27 2.68 -74.58 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000986383682.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.017 kcal (2) G-P(sol) polarization free energy of solvation -77.267 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.750 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.682 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.585 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.432 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds