Wall clock time and date at job start Tue Mar 31 2020 22:33:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08996 * 109.99860 * 2 1 4 4 C 1.54342 * 109.99132 * 238.97168 * 2 1 3 5 5 H 1.08991 * 111.00410 * 100.11926 * 4 2 1 6 6 N 1.46508 * 110.51285 * 336.97041 * 4 2 1 7 7 C 1.36934 * 119.99508 * 95.94780 * 6 4 2 8 8 H 1.07997 * 120.00492 * 0.02562 * 7 6 4 9 9 C 1.38814 * 119.99840 * 179.97438 * 7 6 4 10 10 N 1.31617 * 119.99846 * 359.97438 * 9 7 6 11 11 Si 1.86801 * 120.00062 * 180.02562 * 9 7 6 12 12 H 1.48497 * 109.47329 * 89.99859 * 11 9 7 13 13 H 1.48500 * 109.47168 * 210.00118 * 11 9 7 14 14 H 1.48503 * 109.46912 * 329.99731 * 11 9 7 15 15 C 1.55156 * 103.02072 * 218.66321 * 4 2 1 16 16 C 1.54914 * 101.57881 * 35.30459 * 15 4 2 17 17 N 1.47019 * 109.88331 * 121.10430 * 2 1 3 18 18 C 1.34779 * 125.64699 * 298.38786 * 17 2 1 19 19 O 1.21279 * 119.99627 * 359.72708 * 18 17 2 20 20 C 1.50695 * 119.99870 * 179.72061 * 18 17 2 21 21 C 1.50700 * 109.46867 * 180.02562 * 20 18 17 22 22 C 1.36249 * 120.25916 * 265.27858 * 21 20 18 23 23 C 1.39339 * 121.01591 * 180.28318 * 22 21 20 24 24 C 1.36204 * 121.08533 * 359.43209 * 23 22 21 25 25 C 1.40327 * 119.51495 * 0.27573 * 24 23 22 26 26 C 1.40444 * 122.08235 * 180.02562 * 25 24 23 27 27 N 1.31231 * 119.88552 * 179.97438 * 26 25 24 28 28 C 1.32617 * 122.78071 * 0.04903 * 27 26 25 29 29 C 1.36170 * 121.88113 * 359.94990 * 28 27 26 30 30 C 1.40192 * 120.26006 * 85.00184 * 21 20 18 31 31 H 1.09000 * 109.46881 * 304.41743 * 1 2 3 32 32 H 1.09003 * 109.47194 * 64.42801 * 1 2 3 33 33 H 1.09001 * 109.46818 * 184.42161 * 1 2 3 34 34 H 0.96995 * 120.00020 * 275.94732 * 6 4 2 35 35 H 0.97008 * 119.99870 * 179.97438 * 10 9 7 36 36 H 1.08998 * 111.00546 * 277.23159 * 15 4 2 37 37 H 1.08997 * 111.00224 * 153.37573 * 15 4 2 38 38 H 1.09004 * 110.36454 * 204.14966 * 16 15 4 39 39 H 1.08998 * 110.45875 * 81.87982 * 16 15 4 40 40 H 1.08994 * 109.47568 * 60.00188 * 20 18 17 41 41 H 1.09000 * 109.47482 * 300.00238 * 20 18 17 42 42 H 1.07996 * 119.49356 * 0.02562 * 22 21 20 43 43 H 1.08004 * 119.45345 * 179.71159 * 23 22 21 44 44 H 1.07996 * 120.23999 * 180.30307 * 24 23 22 45 45 H 1.08007 * 120.05565 * 359.96072 * 26 25 24 46 46 H 1.08001 * 119.05973 * 179.97438 * 28 27 26 47 47 H 1.07994 * 120.66612 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9028 1.0242 0.0000 4 6 2.0577 -0.7476 -1.2429 5 1 2.3592 -0.0470 -2.0214 6 7 1.0465 -1.6789 -1.7496 7 6 0.2169 -1.2994 -2.7708 8 1 0.3083 -0.3139 -3.2030 9 6 -0.7409 -2.1819 -3.2513 10 7 -0.8513 -3.3834 -2.7256 11 14 -1.8721 -1.6646 -4.6449 12 1 -1.2502 -2.0208 -5.9455 13 1 -3.1748 -2.3647 -4.5109 14 1 -2.0906 -0.1969 -4.5862 15 6 3.2864 -1.5182 -0.6918 16 6 2.8100 -1.8825 0.7365 17 7 2.0300 -0.7142 1.1838 18 6 1.8075 -0.3623 2.4656 19 8 1.1476 0.6234 2.7179 20 6 2.3786 -1.1937 3.5852 21 6 1.9867 -0.5902 4.9093 22 6 2.8291 0.2689 5.5485 23 6 2.4852 0.8314 6.7761 24 6 1.2922 0.5492 7.3695 25 6 0.3961 -0.3268 6.7380 26 6 -0.8481 -0.6549 7.3009 27 7 -1.6532 -1.4789 6.6726 28 6 -1.3473 -2.0325 5.5069 29 6 -0.1662 -1.7792 4.8784 30 6 0.7499 -0.9039 5.4903 31 1 -0.3633 0.5809 0.8478 32 1 -0.3634 0.4436 -0.9270 33 1 -0.3633 -1.0246 0.0792 34 1 0.9646 -2.5641 -1.3616 35 1 -1.5209 -4.0000 -3.0611 36 1 4.1670 -0.8767 -0.6582 37 1 3.4807 -2.4154 -1.2795 38 1 3.6656 -2.0413 1.3929 39 1 2.1807 -2.7722 0.7129 40 1 3.4652 -1.2163 3.5033 41 1 1.9881 -2.2092 3.5194 42 1 3.7798 0.5145 5.0989 43 1 3.1742 1.5058 7.2629 44 1 1.0375 0.9967 8.3188 45 1 -1.1416 -0.2298 8.2494 46 1 -2.0552 -2.7031 5.0428 47 1 0.0627 -2.2405 3.9291 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000986413078.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:33:31 Heat of formation + Delta-G solvation = 37.732973 kcal Electronic energy + Delta-G solvation = -29381.298305 eV Core-core repulsion = 25529.166758 eV Total energy + Delta-G solvation = -3852.131547 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -41.09030 -39.82511 -37.87238 -37.12396 -34.06165 -33.91880 -31.72690 -31.37204 -30.82908 -30.47889 -29.03631 -27.36158 -25.26454 -24.29884 -23.69549 -23.41784 -22.65270 -21.31074 -19.77098 -18.47062 -18.15116 -17.52309 -17.16655 -16.84298 -16.67923 -15.91986 -15.12189 -14.85171 -14.67912 -14.51699 -14.23847 -13.95013 -13.80820 -13.68230 -13.55056 -13.34951 -12.94891 -12.77599 -12.61349 -12.50480 -12.16179 -12.06003 -11.80548 -11.47899 -11.34719 -11.14135 -10.90576 -10.88873 -10.64373 -10.52301 -10.24201 -10.19096 -10.08202 -9.71428 -9.57349 -9.49218 -9.15023 -8.99310 -8.26052 -8.11494 -7.07550 -5.85514 -3.14728 0.24718 0.81989 1.79576 2.87194 2.90288 3.34411 3.39213 3.45587 3.46402 3.99485 4.24581 4.37273 4.51937 4.52731 4.64062 4.74231 4.76986 4.90285 4.93841 4.98266 5.11221 5.22307 5.25726 5.30442 5.37160 5.52982 5.55210 5.66977 5.67738 5.68791 5.72606 5.82789 5.89479 5.93175 6.06402 6.20437 6.21555 6.25789 6.36314 6.42008 6.52965 6.54700 6.63341 6.70514 6.82195 7.02515 7.32146 7.62982 7.88751 7.89422 8.31827 8.46000 9.44292 9.97573 10.32853 11.36516 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.015223 B = 0.002970 C = 0.002662 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1838.853935 B = 9424.104035 C =10516.722363 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.110 3.890 3 H 0.058 0.942 4 C 0.170 3.830 5 H 0.074 0.926 6 N -0.709 5.709 7 C -0.240 4.240 8 H 0.071 0.929 9 C -0.008 4.008 10 N -0.930 5.930 11 Si 0.905 3.095 12 H -0.290 1.290 13 H -0.292 1.292 14 H -0.281 1.281 15 C -0.145 4.145 16 C 0.101 3.899 17 N -0.605 5.605 18 C 0.526 3.474 19 O -0.536 6.536 20 C -0.103 4.103 21 C -0.049 4.049 22 C -0.091 4.091 23 C -0.115 4.115 24 C -0.092 4.092 25 C -0.111 4.111 26 C 0.140 3.860 27 N -0.489 5.489 28 C 0.075 3.925 29 C -0.145 4.145 30 C -0.007 4.007 31 H 0.038 0.962 32 H 0.066 0.934 33 H 0.065 0.935 34 H 0.385 0.615 35 H 0.256 0.744 36 H 0.071 0.929 37 H 0.087 0.913 38 H 0.066 0.934 39 H 0.070 0.930 40 H 0.103 0.897 41 H 0.103 0.897 42 H 0.125 0.875 43 H 0.126 0.874 44 H 0.131 0.869 45 H 0.161 0.839 46 H 0.153 0.847 47 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.515 3.756 18.716 21.794 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.004 3.996 3 H 0.076 0.924 4 C 0.058 3.942 5 H 0.092 0.908 6 N -0.348 5.348 7 C -0.371 4.371 8 H 0.089 0.911 9 C -0.205 4.205 10 N -0.578 5.578 11 Si 0.736 3.264 12 H -0.217 1.217 13 H -0.218 1.218 14 H -0.207 1.207 15 C -0.184 4.184 16 C -0.022 4.022 17 N -0.339 5.339 18 C 0.313 3.687 19 O -0.413 6.413 20 C -0.143 4.143 21 C -0.050 4.050 22 C -0.110 4.110 23 C -0.133 4.133 24 C -0.112 4.112 25 C -0.113 4.113 26 C -0.031 4.031 27 N -0.196 5.196 28 C -0.068 4.068 29 C -0.165 4.165 30 C -0.012 4.012 31 H 0.057 0.943 32 H 0.085 0.915 33 H 0.084 0.916 34 H 0.219 0.781 35 H 0.066 0.934 36 H 0.089 0.911 37 H 0.105 0.895 38 H 0.084 0.916 39 H 0.089 0.911 40 H 0.121 0.879 41 H 0.121 0.879 42 H 0.143 0.857 43 H 0.144 0.856 44 H 0.149 0.851 45 H 0.178 0.822 46 H 0.171 0.829 47 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 9.176 4.055 18.990 21.477 hybrid contribution 0.130 0.096 -1.143 1.154 sum 9.306 4.151 17.847 20.551 Atomic orbital electron populations 1.21751 0.93743 1.02723 1.00756 1.22720 0.96151 0.95327 0.85394 0.92407 1.21258 0.88452 0.92245 0.92283 0.90768 1.42324 1.37600 1.14327 1.40535 1.19184 1.10272 0.98582 1.09073 0.91082 1.24713 0.99707 0.96153 0.99899 1.69647 1.37304 1.06478 1.44338 0.86232 0.80353 0.77716 0.82141 1.21715 1.21791 1.20696 1.23145 0.98591 1.01807 0.94901 1.22315 0.94612 0.89137 0.96175 1.48647 1.52032 1.28190 1.05032 1.19931 0.80946 0.85563 0.82254 1.90709 1.39828 1.27605 1.83144 1.20701 1.02796 1.00333 0.90475 1.19080 0.93358 0.97785 0.94759 1.20804 0.99713 0.95475 0.95003 1.20849 0.97072 0.99929 0.95499 1.20928 0.93585 0.96890 0.99752 1.18987 0.96959 0.99743 0.95657 1.23155 0.88643 0.92841 0.98504 1.67405 1.34175 1.08727 1.09325 1.22178 0.95494 0.97989 0.91137 1.21941 0.95094 0.98630 1.00793 1.17942 0.94066 0.95692 0.93535 0.94333 0.91466 0.91642 0.78102 0.93446 0.91072 0.89485 0.91567 0.91129 0.87896 0.87929 0.85723 0.85585 0.85072 0.82166 0.82921 0.84666 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.73 8.05 37.16 0.30 -2.43 16 2 C 0.11 1.97 3.43 -66.94 -0.23 1.74 16 3 H 0.06 1.04 8.14 -51.93 -0.42 0.61 16 4 C 0.17 3.05 3.54 -66.08 -0.23 2.82 16 5 H 0.07 1.33 8.06 -51.93 -0.42 0.91 16 6 N -0.71 -15.93 3.84 -51.64 -0.20 -16.13 16 7 C -0.24 -6.15 8.49 -15.06 -0.13 -6.28 16 8 H 0.07 1.79 7.83 -52.49 -0.41 1.38 16 9 C -0.01 -0.23 5.50 -17.43 -0.10 -0.32 16 10 N -0.93 -26.62 13.06 55.49 0.72 -25.89 16 11 Si 0.90 21.69 29.55 -169.99 -5.02 16.66 16 12 H -0.29 -6.94 7.11 56.52 0.40 -6.53 16 13 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 14 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 15 C -0.15 -2.01 6.69 -24.58 -0.16 -2.18 16 16 C 0.10 1.31 6.62 -2.53 -0.02 1.29 16 17 N -0.60 -9.43 3.06 -163.01 -0.50 -9.93 16 18 C 0.53 8.27 7.63 -10.99 -0.08 8.19 16 19 O -0.54 -10.53 15.15 5.56 0.08 -10.45 16 20 C -0.10 -1.19 4.29 -29.04 -0.12 -1.32 16 21 C -0.05 -0.61 4.38 -104.60 -0.46 -1.07 16 22 C -0.09 -0.97 9.58 -39.89 -0.38 -1.35 16 23 C -0.12 -1.08 9.94 -39.90 -0.40 -1.47 16 24 C -0.09 -0.88 9.81 -39.53 -0.39 -1.27 16 25 C -0.11 -1.35 5.74 -106.86 -0.61 -1.96 16 26 C 0.14 1.62 11.05 -16.98 -0.19 1.43 16 27 N -0.49 -6.63 10.30 -13.15 -0.14 -6.77 16 28 C 0.07 1.00 11.07 -17.96 -0.20 0.80 16 29 C -0.15 -1.97 9.36 -39.39 -0.37 -2.33 16 30 C -0.01 -0.10 5.75 -106.81 -0.61 -0.71 16 31 H 0.04 0.81 7.02 -51.93 -0.36 0.45 16 32 H 0.07 1.47 7.25 -51.93 -0.38 1.09 16 33 H 0.06 1.50 7.55 -51.93 -0.39 1.11 16 34 H 0.38 9.27 7.84 -40.82 -0.32 8.95 16 35 H 0.26 7.18 8.31 -40.82 -0.34 6.85 16 36 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 37 H 0.09 1.23 8.14 -51.93 -0.42 0.81 16 38 H 0.07 0.65 7.48 -51.93 -0.39 0.26 16 39 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 40 H 0.10 0.90 7.76 -51.93 -0.40 0.50 16 41 H 0.10 1.06 6.79 -51.93 -0.35 0.71 16 42 H 0.12 1.07 8.05 -52.49 -0.42 0.65 16 43 H 0.13 0.82 8.06 -52.48 -0.42 0.40 16 44 H 0.13 0.84 8.06 -52.49 -0.42 0.42 16 45 H 0.16 1.27 8.06 -52.48 -0.42 0.85 16 46 H 0.15 1.74 8.06 -52.49 -0.42 1.32 16 47 H 0.14 1.74 6.64 -52.49 -0.35 1.40 16 LS Contribution 382.55 15.07 5.77 5.77 Total: -1.00 -32.65 382.55 -10.38 -43.03 By element: Atomic # 1 Polarization: 16.84 SS G_CDS: -6.71 Total: 10.13 kcal Atomic # 6 Polarization: -2.04 SS G_CDS: -4.38 Total: -6.42 kcal Atomic # 7 Polarization: -58.61 SS G_CDS: -0.11 Total: -58.72 kcal Atomic # 8 Polarization: -10.53 SS G_CDS: 0.08 Total: -10.45 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -5.02 Total: 16.66 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -32.65 -10.38 -43.03 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000986413078.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.764 kcal (2) G-P(sol) polarization free energy of solvation -32.649 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.115 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.382 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.031 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.733 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds