Wall clock time and date at job start Tue Mar 31 2020 22:33:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08996 * 109.99860 * 2 1 4 4 C 1.54342 * 109.99132 * 238.97168 * 2 1 3 5 5 H 1.08991 * 111.00410 * 100.11926 * 4 2 1 6 6 N 1.46508 * 110.51285 * 336.97041 * 4 2 1 7 7 C 1.36934 * 119.99508 * 95.94780 * 6 4 2 8 8 H 1.07997 * 120.00492 * 0.02562 * 7 6 4 9 9 C 1.38814 * 119.99840 * 179.97438 * 7 6 4 10 10 N 1.31617 * 119.99846 * 359.97438 * 9 7 6 11 11 Si 1.86801 * 120.00062 * 180.02562 * 9 7 6 12 12 H 1.48497 * 109.47329 * 89.99859 * 11 9 7 13 13 H 1.48500 * 109.47168 * 210.00118 * 11 9 7 14 14 H 1.48503 * 109.46912 * 329.99731 * 11 9 7 15 15 C 1.55156 * 103.02072 * 218.66321 * 4 2 1 16 16 C 1.54914 * 101.57881 * 35.30459 * 15 4 2 17 17 N 1.47019 * 109.88331 * 121.10430 * 2 1 3 18 18 C 1.34779 * 125.64699 * 298.38786 * 17 2 1 19 19 O 1.21279 * 119.99627 * 359.72708 * 18 17 2 20 20 C 1.50695 * 119.99870 * 179.72061 * 18 17 2 21 21 C 1.50700 * 109.46867 * 180.02562 * 20 18 17 22 22 C 1.36249 * 120.25916 * 265.27858 * 21 20 18 23 23 C 1.39339 * 121.01591 * 180.28318 * 22 21 20 24 24 C 1.36204 * 121.08533 * 359.43209 * 23 22 21 25 25 C 1.40327 * 119.51495 * 0.27573 * 24 23 22 26 26 C 1.40444 * 122.08235 * 180.02562 * 25 24 23 27 27 N 1.31231 * 119.88552 * 179.97438 * 26 25 24 28 28 C 1.32617 * 122.78071 * 0.04903 * 27 26 25 29 29 C 1.36170 * 121.88113 * 359.94990 * 28 27 26 30 30 C 1.40192 * 120.26006 * 85.00184 * 21 20 18 31 31 H 1.09000 * 109.46881 * 304.41743 * 1 2 3 32 32 H 1.09003 * 109.47194 * 64.42801 * 1 2 3 33 33 H 1.09001 * 109.46818 * 184.42161 * 1 2 3 34 34 H 0.96995 * 120.00020 * 275.94732 * 6 4 2 35 35 H 0.97008 * 119.99870 * 179.97438 * 10 9 7 36 36 H 1.08998 * 111.00546 * 277.23159 * 15 4 2 37 37 H 1.08997 * 111.00224 * 153.37573 * 15 4 2 38 38 H 1.09004 * 110.36454 * 204.14966 * 16 15 4 39 39 H 1.08998 * 110.45875 * 81.87982 * 16 15 4 40 40 H 1.08994 * 109.47568 * 60.00188 * 20 18 17 41 41 H 1.09000 * 109.47482 * 300.00238 * 20 18 17 42 42 H 1.07996 * 119.49356 * 0.02562 * 22 21 20 43 43 H 1.08004 * 119.45345 * 179.71159 * 23 22 21 44 44 H 1.07996 * 120.23999 * 180.30307 * 24 23 22 45 45 H 1.08007 * 120.05565 * 359.96072 * 26 25 24 46 46 H 1.08001 * 119.05973 * 179.97438 * 28 27 26 47 47 H 1.07994 * 120.66612 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9028 1.0242 0.0000 4 6 2.0577 -0.7476 -1.2429 5 1 2.3592 -0.0470 -2.0214 6 7 1.0465 -1.6789 -1.7496 7 6 0.2169 -1.2994 -2.7708 8 1 0.3083 -0.3139 -3.2030 9 6 -0.7409 -2.1819 -3.2513 10 7 -0.8513 -3.3834 -2.7256 11 14 -1.8721 -1.6646 -4.6449 12 1 -1.2502 -2.0208 -5.9455 13 1 -3.1748 -2.3647 -4.5109 14 1 -2.0906 -0.1969 -4.5862 15 6 3.2864 -1.5182 -0.6918 16 6 2.8100 -1.8825 0.7365 17 7 2.0300 -0.7142 1.1838 18 6 1.8075 -0.3623 2.4656 19 8 1.1476 0.6234 2.7179 20 6 2.3786 -1.1937 3.5852 21 6 1.9867 -0.5902 4.9093 22 6 2.8291 0.2689 5.5485 23 6 2.4852 0.8314 6.7761 24 6 1.2922 0.5492 7.3695 25 6 0.3961 -0.3268 6.7380 26 6 -0.8481 -0.6549 7.3009 27 7 -1.6532 -1.4789 6.6726 28 6 -1.3473 -2.0325 5.5069 29 6 -0.1662 -1.7792 4.8784 30 6 0.7499 -0.9039 5.4903 31 1 -0.3633 0.5809 0.8478 32 1 -0.3634 0.4436 -0.9270 33 1 -0.3633 -1.0246 0.0792 34 1 0.9646 -2.5641 -1.3616 35 1 -1.5209 -4.0000 -3.0611 36 1 4.1670 -0.8767 -0.6582 37 1 3.4807 -2.4154 -1.2795 38 1 3.6656 -2.0413 1.3929 39 1 2.1807 -2.7722 0.7129 40 1 3.4652 -1.2163 3.5033 41 1 1.9881 -2.2092 3.5194 42 1 3.7798 0.5145 5.0989 43 1 3.1742 1.5058 7.2629 44 1 1.0375 0.9967 8.3188 45 1 -1.1416 -0.2298 8.2494 46 1 -2.0552 -2.7031 5.0428 47 1 0.0627 -2.2405 3.9291 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000986413078.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:33:29 Heat of formation + Delta-G solvation = 18.517397 kcal Electronic energy + Delta-G solvation = -29382.131555 eV Core-core repulsion = 25529.166758 eV Total energy + Delta-G solvation = -3852.964797 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -41.99109 -41.06627 -39.04747 -38.16614 -35.74493 -34.85526 -33.32831 -32.37161 -32.12367 -31.53035 -30.54355 -28.38295 -26.82069 -25.30874 -25.14084 -24.55730 -23.85181 -22.29535 -21.08524 -19.76299 -19.34940 -18.98146 -18.07289 -17.93655 -17.73034 -17.26143 -16.45539 -16.03903 -15.92565 -15.51694 -15.36400 -15.28610 -15.16286 -14.97464 -14.76629 -14.48058 -14.29725 -14.04362 -13.74294 -13.58728 -13.23220 -13.07373 -12.98654 -12.91576 -12.80100 -12.56097 -12.40506 -12.29834 -12.21954 -11.94516 -11.84793 -11.68066 -11.49991 -11.15734 -10.96303 -10.75446 -10.50531 -9.99712 -9.57282 -9.01137 -8.95671 -7.92542 -5.18780 -0.59929 -0.05244 0.92369 1.46812 1.48416 1.55078 1.67346 1.99808 2.23048 2.56547 3.09424 3.38977 3.41896 3.50543 3.68044 3.72428 3.75212 3.87024 3.90588 3.93323 4.04684 4.16648 4.22286 4.30181 4.34508 4.41308 4.41909 4.48403 4.55650 4.64048 4.72799 4.78093 4.83271 4.83879 4.85514 5.01176 5.08000 5.13117 5.13317 5.26204 5.32180 5.45342 5.49006 5.52243 5.53700 5.58176 5.66784 5.94004 6.29216 6.67300 6.96920 7.23322 7.37532 8.10774 8.34344 9.30270 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.015223 B = 0.002970 C = 0.002662 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1838.853935 B = 9424.104035 C =10516.722363 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C 0.116 3.884 3 H 0.062 0.938 4 C 0.162 3.838 5 H 0.076 0.924 6 N -0.716 5.716 7 C -0.226 4.226 8 H 0.074 0.926 9 C -0.069 4.069 10 N -0.965 5.965 11 Si 0.958 3.042 12 H -0.287 1.287 13 H -0.302 1.302 14 H -0.274 1.274 15 C -0.131 4.131 16 C 0.100 3.900 17 N -0.606 5.606 18 C 0.522 3.478 19 O -0.581 6.581 20 C -0.092 4.092 21 C -0.078 4.078 22 C -0.087 4.087 23 C -0.119 4.119 24 C -0.087 4.087 25 C -0.132 4.132 26 C 0.143 3.857 27 N -0.516 5.516 28 C 0.058 3.942 29 C -0.164 4.164 30 C -0.030 4.030 31 H 0.026 0.974 32 H 0.049 0.951 33 H 0.035 0.965 34 H 0.375 0.625 35 H 0.248 0.752 36 H 0.103 0.897 37 H 0.087 0.913 38 H 0.113 0.887 39 H 0.057 0.943 40 H 0.140 0.860 41 H 0.110 0.890 42 H 0.148 0.852 43 H 0.161 0.839 44 H 0.167 0.833 45 H 0.196 0.804 46 H 0.158 0.842 47 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.521 5.100 20.505 25.086 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.009 3.991 3 H 0.080 0.920 4 C 0.051 3.949 5 H 0.094 0.906 6 N -0.354 5.354 7 C -0.358 4.358 8 H 0.092 0.908 9 C -0.262 4.262 10 N -0.615 5.615 11 Si 0.789 3.211 12 H -0.214 1.214 13 H -0.229 1.229 14 H -0.200 1.200 15 C -0.169 4.169 16 C -0.021 4.021 17 N -0.339 5.339 18 C 0.312 3.688 19 O -0.461 6.461 20 C -0.131 4.131 21 C -0.078 4.078 22 C -0.106 4.106 23 C -0.137 4.137 24 C -0.107 4.107 25 C -0.134 4.134 26 C -0.028 4.028 27 N -0.225 5.225 28 C -0.084 4.084 29 C -0.184 4.184 30 C -0.035 4.035 31 H 0.045 0.955 32 H 0.068 0.932 33 H 0.055 0.945 34 H 0.208 0.792 35 H 0.057 0.943 36 H 0.121 0.879 37 H 0.105 0.895 38 H 0.131 0.869 39 H 0.076 0.924 40 H 0.158 0.842 41 H 0.128 0.872 42 H 0.166 0.834 43 H 0.178 0.822 44 H 0.184 0.816 45 H 0.213 0.787 46 H 0.176 0.824 47 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 12.234 5.416 20.779 24.713 hybrid contribution -0.737 -0.177 -1.585 1.757 sum 11.497 5.239 19.193 22.979 Atomic orbital electron populations 1.21540 0.96349 1.00210 0.99218 1.22418 0.93829 0.95986 0.86854 0.91991 1.21485 0.89092 0.92154 0.92193 0.90583 1.42420 1.38358 1.14645 1.40008 1.19488 1.09576 0.98126 1.08564 0.90802 1.25351 1.01740 0.96569 1.02511 1.69778 1.38236 1.07470 1.46057 0.85356 0.78305 0.77437 0.79992 1.21391 1.22933 1.19962 1.23076 0.97429 1.01683 0.94740 1.22483 0.95539 0.87444 0.96676 1.48690 1.52093 1.28587 1.04534 1.20714 0.80018 0.85246 0.82813 1.90682 1.41783 1.29844 1.83804 1.20693 1.04633 0.99497 0.88308 1.19237 0.93652 0.99456 0.95489 1.21231 1.00136 0.93977 0.95290 1.21300 0.97506 0.99836 0.95040 1.21365 0.92992 0.95562 1.00747 1.19328 0.97817 1.00592 0.95639 1.23785 0.88205 0.91587 0.99238 1.67437 1.35185 1.10134 1.09695 1.22340 0.95836 0.98559 0.91636 1.21969 0.95749 0.99711 1.00951 1.18253 0.94697 0.96028 0.94508 0.95463 0.93199 0.94538 0.79212 0.94304 0.87853 0.89481 0.86862 0.92419 0.84227 0.87177 0.83424 0.82189 0.81592 0.78684 0.82443 0.85242 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.94 8.05 71.98 0.58 -4.36 16 2 C 0.12 4.10 3.43 45.35 0.16 4.25 16 3 H 0.06 2.17 8.14 -2.39 -0.02 2.15 16 4 C 0.16 5.62 3.54 46.18 0.16 5.79 16 5 H 0.08 2.63 8.06 -2.39 -0.02 2.61 16 6 N -0.72 -32.49 3.84 -317.30 -1.22 -33.71 16 7 C -0.23 -11.68 8.49 84.03 0.71 -10.97 16 8 H 0.07 3.72 7.83 -2.91 -0.02 3.70 16 9 C -0.07 -3.82 5.50 84.86 0.47 -3.35 16 10 N -0.96 -56.87 13.06 21.65 0.28 -56.59 16 11 Si 0.96 45.48 29.55 68.60 2.03 47.51 16 12 H -0.29 -13.32 7.11 99.48 0.71 -12.62 16 13 H -0.30 -14.75 7.11 99.48 0.71 -14.04 16 14 H -0.27 -12.52 7.11 99.48 0.71 -11.81 16 15 C -0.13 -3.24 6.69 31.99 0.21 -3.03 16 16 C 0.10 2.34 6.62 86.86 0.58 2.92 16 17 N -0.61 -18.06 3.06 -788.03 -2.41 -20.48 16 18 C 0.52 15.89 7.63 87.66 0.67 16.56 16 19 O -0.58 -22.91 15.15 -3.03 -0.05 -22.96 16 20 C -0.09 -1.93 4.29 29.10 0.12 -1.81 16 21 C -0.08 -1.81 4.38 -19.85 -0.09 -1.90 16 22 C -0.09 -1.59 9.58 22.07 0.21 -1.38 16 23 C -0.12 -1.78 9.94 22.06 0.22 -1.56 16 24 C -0.09 -1.40 9.81 22.30 0.22 -1.18 16 25 C -0.13 -3.02 5.74 -21.31 -0.12 -3.14 16 26 C 0.14 3.17 11.05 85.32 0.94 4.12 16 27 N -0.52 -14.26 10.30 -195.52 -2.01 -16.27 16 28 C 0.06 1.64 11.07 84.09 0.93 2.58 16 29 C -0.16 -4.67 9.36 22.39 0.21 -4.46 16 30 C -0.03 -0.80 5.75 -21.28 -0.12 -0.92 16 31 H 0.03 1.19 7.02 -2.39 -0.02 1.17 16 32 H 0.05 2.25 7.25 -2.39 -0.02 2.23 16 33 H 0.04 1.74 7.55 -2.39 -0.02 1.73 16 34 H 0.38 18.45 7.84 -92.71 -0.73 17.72 16 35 H 0.25 14.43 8.31 -92.70 -0.77 13.66 16 36 H 0.10 1.97 8.14 -2.39 -0.02 1.95 16 37 H 0.09 2.23 8.14 -2.39 -0.02 2.21 16 38 H 0.11 1.65 7.48 -2.39 -0.02 1.63 16 39 H 0.06 1.53 8.14 -2.39 -0.02 1.51 16 40 H 0.14 1.83 7.76 -2.39 -0.02 1.81 16 41 H 0.11 2.14 6.79 -2.39 -0.02 2.12 16 42 H 0.15 1.91 8.05 -2.91 -0.02 1.88 16 43 H 0.16 1.26 8.06 -2.91 -0.02 1.24 16 44 H 0.17 1.39 8.06 -2.91 -0.02 1.36 16 45 H 0.20 2.63 8.06 -2.91 -0.02 2.61 16 46 H 0.16 3.96 8.06 -2.91 -0.02 3.94 16 47 H 0.13 3.61 6.64 -2.91 -0.02 3.59 16 Total: -1.00 -74.90 382.55 2.94 -71.96 By element: Atomic # 1 Polarization: 32.10 SS G_CDS: 0.26 Total: 32.36 kcal Atomic # 6 Polarization: -7.89 SS G_CDS: 6.06 Total: -1.83 kcal Atomic # 7 Polarization: -121.68 SS G_CDS: -5.36 Total: -127.04 kcal Atomic # 8 Polarization: -22.91 SS G_CDS: -0.05 Total: -22.96 kcal Atomic # 14 Polarization: 45.48 SS G_CDS: 2.03 Total: 47.51 kcal Total: -74.90 2.94 -71.96 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000986413078.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.477 kcal (2) G-P(sol) polarization free energy of solvation -74.902 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.575 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.943 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.960 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.517 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds