Wall clock time and date at job start Tue Mar 31 2020 22:33:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08995 * 110.00289 * 2 1 4 4 C 1.54338 * 109.99027 * 238.96430 * 2 1 3 5 5 H 1.09000 * 110.51572 * 336.97983 * 4 2 1 6 6 N 1.46496 * 111.00100 * 100.12781 * 4 2 1 7 7 C 1.36940 * 119.99931 * 200.23678 * 6 4 2 8 8 H 1.08003 * 119.99864 * 359.97438 * 7 6 4 9 9 C 1.38817 * 120.00222 * 180.02562 * 7 6 4 10 10 N 1.31623 * 119.99363 * 359.97438 * 9 7 6 11 11 Si 1.86797 * 120.00195 * 179.97438 * 9 7 6 12 12 H 1.48500 * 109.47245 * 59.99589 * 11 9 7 13 13 H 1.48501 * 109.46975 * 179.97438 * 11 9 7 14 14 H 1.48504 * 109.46665 * 299.99650 * 11 9 7 15 15 C 1.55150 * 103.02020 * 218.67079 * 4 2 1 16 16 C 1.54905 * 101.58604 * 35.30689 * 15 4 2 17 17 N 1.47017 * 109.88130 * 121.10312 * 2 1 3 18 18 C 1.34783 * 125.64563 * 298.38677 * 17 2 1 19 19 O 1.21286 * 119.99919 * 359.72283 * 18 17 2 20 20 C 1.50706 * 120.00218 * 179.71643 * 18 17 2 21 21 C 1.50695 * 109.47042 * 180.02562 * 20 18 17 22 22 C 1.36255 * 120.25996 * 265.00043 * 21 20 18 23 23 C 1.39330 * 121.02164 * 179.70567 * 22 21 20 24 24 C 1.36208 * 121.08295 * 0.04107 * 23 22 21 25 25 C 1.40337 * 119.51430 * 359.97438 * 24 23 22 26 26 C 1.40442 * 122.07566 * 179.97438 * 25 24 23 27 27 N 1.31239 * 119.88085 * 180.02562 * 26 25 24 28 28 C 1.32613 * 122.77623 * 359.97438 * 27 26 25 29 29 C 1.36165 * 121.88533 * 359.97438 * 28 27 26 30 30 C 1.40187 * 120.25694 * 84.72314 * 21 20 18 31 31 H 1.08996 * 109.46632 * 300.35902 * 1 2 3 32 32 H 1.09005 * 109.46501 * 60.35133 * 1 2 3 33 33 H 1.08998 * 109.47226 * 180.35207 * 1 2 3 34 34 H 0.96993 * 120.00311 * 20.23739 * 6 4 2 35 35 H 0.96998 * 119.99160 * 180.02562 * 10 9 7 36 36 H 1.09003 * 111.00393 * 277.22851 * 15 4 2 37 37 H 1.09004 * 111.03645 * 153.39677 * 15 4 2 38 38 H 1.08997 * 110.36860 * 204.15627 * 16 15 4 39 39 H 1.09001 * 110.46273 * 81.87537 * 16 15 4 40 40 H 1.08997 * 109.46798 * 60.00257 * 20 18 17 41 41 H 1.09007 * 109.46805 * 300.00385 * 20 18 17 42 42 H 1.08006 * 119.48768 * 359.72538 * 22 21 20 43 43 H 1.08002 * 119.45861 * 180.02562 * 23 22 21 44 44 H 1.07995 * 120.23772 * 179.97438 * 24 23 22 45 45 H 1.07998 * 120.05801 * 359.97438 * 26 25 24 46 46 H 1.08004 * 119.05582 * 180.02562 * 28 27 26 47 47 H 1.08002 * 120.66551 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9029 1.0242 0.0000 4 6 2.0577 -0.7478 -1.2428 5 1 1.3053 -1.4405 -1.6198 6 7 2.4631 0.1938 -2.2892 7 6 2.5624 -0.2275 -3.5884 8 1 2.3421 -1.2541 -3.8415 9 6 2.9471 0.6646 -4.5800 10 7 3.2160 1.9155 -4.2713 11 14 3.0832 0.0897 -6.3520 12 1 1.7634 -0.4114 -6.8127 13 1 3.5079 1.2252 -7.2096 14 1 4.0861 -1.0018 -6.4426 15 6 3.2862 -1.5184 -0.6916 16 6 2.8098 -1.8827 0.7367 17 7 2.0300 -0.7142 1.1838 18 6 1.8074 -0.3622 2.4657 19 8 1.1475 0.6237 2.7180 20 6 2.3784 -1.1936 3.5855 21 6 1.9864 -0.5900 4.9095 22 6 2.8313 0.2647 5.5514 23 6 2.4825 0.8366 6.7731 24 6 1.2871 0.5586 7.3639 25 6 0.3910 -0.3176 6.7325 26 6 -0.8550 -0.6420 7.2934 27 7 -1.6597 -1.4672 6.6657 28 6 -1.3520 -2.0238 5.5021 29 6 -0.1695 -1.7733 4.8752 30 6 0.7472 -0.8990 5.4874 31 1 -0.3632 0.5194 0.8867 32 1 -0.3632 0.5084 -0.8932 33 1 -0.3633 -1.0276 0.0063 34 1 2.6613 1.1157 -2.0619 35 1 3.4845 2.5389 -4.9643 36 1 4.1669 -0.8770 -0.6580 37 1 3.4812 -2.4157 -1.2791 38 1 3.6654 -2.0414 1.3931 39 1 2.1804 -2.7723 0.7132 40 1 3.4650 -1.2163 3.5035 41 1 1.9877 -2.2092 3.5196 42 1 3.7861 0.5028 5.1062 43 1 3.1714 1.5111 7.2598 44 1 1.0309 1.0093 8.3113 45 1 -1.1500 -0.2139 8.2400 46 1 -2.0600 -2.6945 5.0379 47 1 0.0607 -2.2372 3.9274 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000986413080.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:33:34 Heat of formation + Delta-G solvation = 34.012510 kcal Electronic energy + Delta-G solvation = -28863.818650 eV Core-core repulsion = 25011.525772 eV Total energy + Delta-G solvation = -3852.292878 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -41.19785 -39.93789 -37.92332 -37.18166 -34.18518 -34.04798 -31.88918 -31.45715 -30.99096 -30.61049 -29.27932 -27.54464 -25.25395 -24.40624 -23.79591 -23.16902 -22.76319 -21.34703 -20.10657 -18.82097 -18.25336 -17.34844 -17.20515 -16.95454 -16.87825 -16.04657 -15.22006 -15.03433 -14.78306 -14.58106 -14.42004 -14.03110 -13.92270 -13.68807 -13.53441 -13.40560 -13.02959 -12.87938 -12.72801 -12.39100 -12.19714 -12.14982 -11.96409 -11.74764 -11.64517 -11.25126 -11.19450 -11.05929 -10.86561 -10.62834 -10.33721 -10.31151 -10.06938 -9.80633 -9.69006 -9.61556 -9.23831 -8.97977 -8.45065 -8.21636 -7.07286 -5.84964 -3.15697 0.14263 0.72544 1.69192 2.72390 2.79724 3.15794 3.38830 3.43704 3.44781 3.88619 4.14112 4.25406 4.44158 4.51394 4.55199 4.61865 4.66383 4.79301 4.88899 4.96167 5.01638 5.13849 5.16726 5.22809 5.31446 5.41836 5.43712 5.53930 5.57074 5.57520 5.63130 5.73958 5.79228 5.82847 5.89734 6.04741 6.08999 6.14751 6.24979 6.27214 6.41035 6.41872 6.53840 6.57169 6.61326 6.69143 6.88003 7.61513 7.70805 7.77389 8.29022 8.32729 9.43721 9.98032 10.32617 11.37134 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.023399 B = 0.002329 C = 0.002257 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1196.361345 B =12019.715765 C =12402.155738 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.128 3.872 3 H 0.077 0.923 4 C 0.177 3.823 5 H 0.064 0.936 6 N -0.715 5.715 7 C -0.245 4.245 8 H 0.072 0.928 9 C -0.010 4.010 10 N -0.930 5.930 11 Si 0.909 3.091 12 H -0.285 1.285 13 H -0.291 1.291 14 H -0.285 1.285 15 C -0.155 4.155 16 C 0.097 3.903 17 N -0.609 5.609 18 C 0.527 3.473 19 O -0.532 6.532 20 C -0.102 4.102 21 C -0.053 4.053 22 C -0.087 4.087 23 C -0.114 4.114 24 C -0.091 4.091 25 C -0.111 4.111 26 C 0.143 3.857 27 N -0.490 5.490 28 C 0.074 3.926 29 C -0.148 4.148 30 C -0.006 4.006 31 H 0.060 0.940 32 H 0.069 0.931 33 H 0.050 0.950 34 H 0.386 0.614 35 H 0.257 0.743 36 H 0.075 0.925 37 H 0.076 0.924 38 H 0.068 0.932 39 H 0.065 0.935 40 H 0.105 0.895 41 H 0.102 0.898 42 H 0.127 0.873 43 H 0.128 0.872 44 H 0.132 0.868 45 H 0.162 0.838 46 H 0.152 0.848 47 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.626 -8.518 23.604 25.146 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.024 3.976 3 H 0.095 0.905 4 C 0.065 3.935 5 H 0.082 0.918 6 N -0.355 5.355 7 C -0.376 4.376 8 H 0.089 0.911 9 C -0.206 4.206 10 N -0.577 5.577 11 Si 0.739 3.261 12 H -0.212 1.212 13 H -0.217 1.217 14 H -0.212 1.212 15 C -0.197 4.197 16 C -0.027 4.027 17 N -0.344 5.344 18 C 0.314 3.686 19 O -0.409 6.409 20 C -0.141 4.141 21 C -0.054 4.054 22 C -0.107 4.107 23 C -0.132 4.132 24 C -0.111 4.111 25 C -0.113 4.113 26 C -0.028 4.028 27 N -0.198 5.198 28 C -0.069 4.069 29 C -0.167 4.167 30 C -0.012 4.012 31 H 0.080 0.920 32 H 0.088 0.912 33 H 0.069 0.931 34 H 0.220 0.780 35 H 0.067 0.933 36 H 0.094 0.906 37 H 0.095 0.905 38 H 0.087 0.913 39 H 0.083 0.917 40 H 0.123 0.877 41 H 0.120 0.880 42 H 0.145 0.855 43 H 0.146 0.854 44 H 0.150 0.850 45 H 0.179 0.821 46 H 0.169 0.831 47 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -2.849 -8.323 23.852 25.423 hybrid contribution 1.150 0.214 -1.473 1.881 sum -1.699 -8.110 22.380 23.864 Atomic orbital electron populations 1.22036 0.94900 1.01538 1.02714 1.21886 0.94360 0.96912 0.84406 0.90543 1.21226 0.93484 0.91624 0.87177 0.91833 1.42329 1.80742 1.09341 1.03103 1.19145 1.39348 0.95231 0.83833 0.91051 1.24774 1.02008 0.95654 0.98189 1.69658 1.52195 1.03188 1.32698 0.86251 0.77836 0.77311 0.84652 1.21170 1.21664 1.21185 1.23563 1.01432 1.01758 0.92921 1.22412 0.94641 0.88228 0.97383 1.48594 1.52359 1.28521 1.04909 1.19977 0.80896 0.85560 0.82131 1.90725 1.39798 1.27275 1.83113 1.20677 1.03063 1.00074 0.90320 1.19060 0.93400 0.98100 0.94799 1.20859 0.99759 0.95097 0.94935 1.20880 0.97048 0.99750 0.95497 1.20952 0.93562 0.96814 0.99759 1.18991 0.96925 0.99730 0.95689 1.23170 0.88584 0.92642 0.98446 1.67405 1.34303 1.08790 1.09318 1.22136 0.95425 0.98043 0.91292 1.21886 0.95158 0.98911 1.00778 1.17923 0.94010 0.95667 0.93565 0.92049 0.91168 0.93131 0.77999 0.93291 0.90611 0.90534 0.91332 0.91657 0.87657 0.87955 0.85546 0.85440 0.84984 0.82101 0.83093 0.84865 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.55 9.11 37.16 0.34 -2.21 16 2 C 0.13 2.21 3.21 -66.95 -0.22 1.99 16 3 H 0.08 1.51 7.70 -51.93 -0.40 1.11 16 4 C 0.18 3.27 3.11 -66.09 -0.21 3.07 16 5 H 0.06 1.19 7.82 -51.93 -0.41 0.78 16 6 N -0.71 -17.05 5.25 -51.65 -0.27 -17.32 16 7 C -0.24 -6.46 9.98 -15.06 -0.15 -6.61 16 8 H 0.07 1.81 7.83 -52.48 -0.41 1.40 16 9 C -0.01 -0.27 5.50 -17.43 -0.10 -0.36 16 10 N -0.93 -27.42 13.06 55.49 0.72 -26.69 16 11 Si 0.91 21.71 29.55 -169.99 -5.02 16.68 16 12 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 13 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 14 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 15 C -0.16 -2.40 6.77 -24.59 -0.17 -2.57 16 16 C 0.10 1.15 6.69 -2.53 -0.02 1.13 16 17 N -0.61 -8.81 3.06 -163.01 -0.50 -9.31 16 18 C 0.53 7.61 7.63 -10.98 -0.08 7.53 16 19 O -0.53 -9.78 15.08 5.55 0.08 -9.70 16 20 C -0.10 -1.04 4.28 -29.03 -0.12 -1.17 16 21 C -0.05 -0.60 4.38 -104.61 -0.46 -1.06 16 22 C -0.09 -0.88 9.58 -39.89 -0.38 -1.26 16 23 C -0.11 -1.00 9.94 -39.91 -0.40 -1.40 16 24 C -0.09 -0.80 9.81 -39.52 -0.39 -1.19 16 25 C -0.11 -1.21 5.74 -106.86 -0.61 -1.83 16 26 C 0.14 1.46 11.05 -16.98 -0.19 1.27 16 27 N -0.49 -5.82 10.30 -13.15 -0.14 -5.96 16 28 C 0.07 0.82 11.07 -17.96 -0.20 0.62 16 29 C -0.15 -1.67 9.36 -39.40 -0.37 -2.04 16 30 C -0.01 -0.08 5.75 -106.82 -0.61 -0.69 16 31 H 0.06 1.07 6.89 -51.93 -0.36 0.71 16 32 H 0.07 1.22 8.14 -51.93 -0.42 0.79 16 33 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 34 H 0.39 9.99 7.53 -40.82 -0.31 9.68 16 35 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 36 H 0.08 1.29 8.14 -51.93 -0.42 0.87 16 37 H 0.08 1.13 8.14 -51.93 -0.42 0.70 16 38 H 0.07 0.65 7.48 -51.93 -0.39 0.26 16 39 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 40 H 0.11 0.86 7.75 -51.93 -0.40 0.45 16 41 H 0.10 0.85 6.80 -51.93 -0.35 0.49 16 42 H 0.13 1.07 8.05 -52.48 -0.42 0.64 16 43 H 0.13 0.79 8.06 -52.49 -0.42 0.37 16 44 H 0.13 0.75 8.06 -52.49 -0.42 0.33 16 45 H 0.16 1.09 8.06 -52.49 -0.42 0.67 16 46 H 0.15 1.31 8.06 -52.48 -0.42 0.89 16 47 H 0.13 1.32 6.65 -52.49 -0.35 0.97 16 LS Contribution 386.33 15.07 5.82 5.82 Total: -1.00 -33.37 386.33 -10.36 -43.73 By element: Atomic # 1 Polarization: 16.26 SS G_CDS: -6.74 Total: 9.52 kcal Atomic # 6 Polarization: -2.45 SS G_CDS: -4.33 Total: -6.78 kcal Atomic # 7 Polarization: -59.10 SS G_CDS: -0.18 Total: -59.28 kcal Atomic # 8 Polarization: -9.78 SS G_CDS: 0.08 Total: -9.70 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -5.02 Total: 16.68 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -33.37 -10.36 -43.73 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000986413080.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.746 kcal (2) G-P(sol) polarization free energy of solvation -33.370 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.376 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.364 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.734 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.013 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds