Wall clock time and date at job start Tue Mar 31 2020 22:33:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08995 * 110.00289 * 2 1 4 4 C 1.54338 * 109.99027 * 238.96430 * 2 1 3 5 5 H 1.09000 * 110.51572 * 336.97983 * 4 2 1 6 6 N 1.46496 * 111.00100 * 100.12781 * 4 2 1 7 7 C 1.36940 * 119.99931 * 200.23678 * 6 4 2 8 8 H 1.08003 * 119.99864 * 359.97438 * 7 6 4 9 9 C 1.38817 * 120.00222 * 180.02562 * 7 6 4 10 10 N 1.31623 * 119.99363 * 359.97438 * 9 7 6 11 11 Si 1.86797 * 120.00195 * 179.97438 * 9 7 6 12 12 H 1.48500 * 109.47245 * 59.99589 * 11 9 7 13 13 H 1.48501 * 109.46975 * 179.97438 * 11 9 7 14 14 H 1.48504 * 109.46665 * 299.99650 * 11 9 7 15 15 C 1.55150 * 103.02020 * 218.67079 * 4 2 1 16 16 C 1.54905 * 101.58604 * 35.30689 * 15 4 2 17 17 N 1.47017 * 109.88130 * 121.10312 * 2 1 3 18 18 C 1.34783 * 125.64563 * 298.38677 * 17 2 1 19 19 O 1.21286 * 119.99919 * 359.72283 * 18 17 2 20 20 C 1.50706 * 120.00218 * 179.71643 * 18 17 2 21 21 C 1.50695 * 109.47042 * 180.02562 * 20 18 17 22 22 C 1.36255 * 120.25996 * 265.00043 * 21 20 18 23 23 C 1.39330 * 121.02164 * 179.70567 * 22 21 20 24 24 C 1.36208 * 121.08295 * 0.04107 * 23 22 21 25 25 C 1.40337 * 119.51430 * 359.97438 * 24 23 22 26 26 C 1.40442 * 122.07566 * 179.97438 * 25 24 23 27 27 N 1.31239 * 119.88085 * 180.02562 * 26 25 24 28 28 C 1.32613 * 122.77623 * 359.97438 * 27 26 25 29 29 C 1.36165 * 121.88533 * 359.97438 * 28 27 26 30 30 C 1.40187 * 120.25694 * 84.72314 * 21 20 18 31 31 H 1.08996 * 109.46632 * 300.35902 * 1 2 3 32 32 H 1.09005 * 109.46501 * 60.35133 * 1 2 3 33 33 H 1.08998 * 109.47226 * 180.35207 * 1 2 3 34 34 H 0.96993 * 120.00311 * 20.23739 * 6 4 2 35 35 H 0.96998 * 119.99160 * 180.02562 * 10 9 7 36 36 H 1.09003 * 111.00393 * 277.22851 * 15 4 2 37 37 H 1.09004 * 111.03645 * 153.39677 * 15 4 2 38 38 H 1.08997 * 110.36860 * 204.15627 * 16 15 4 39 39 H 1.09001 * 110.46273 * 81.87537 * 16 15 4 40 40 H 1.08997 * 109.46798 * 60.00257 * 20 18 17 41 41 H 1.09007 * 109.46805 * 300.00385 * 20 18 17 42 42 H 1.08006 * 119.48768 * 359.72538 * 22 21 20 43 43 H 1.08002 * 119.45861 * 180.02562 * 23 22 21 44 44 H 1.07995 * 120.23772 * 179.97438 * 24 23 22 45 45 H 1.07998 * 120.05801 * 359.97438 * 26 25 24 46 46 H 1.08004 * 119.05582 * 180.02562 * 28 27 26 47 47 H 1.08002 * 120.66551 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9029 1.0242 0.0000 4 6 2.0577 -0.7478 -1.2428 5 1 1.3053 -1.4405 -1.6198 6 7 2.4631 0.1938 -2.2892 7 6 2.5624 -0.2275 -3.5884 8 1 2.3421 -1.2541 -3.8415 9 6 2.9471 0.6646 -4.5800 10 7 3.2160 1.9155 -4.2713 11 14 3.0832 0.0897 -6.3520 12 1 1.7634 -0.4114 -6.8127 13 1 3.5079 1.2252 -7.2096 14 1 4.0861 -1.0018 -6.4426 15 6 3.2862 -1.5184 -0.6916 16 6 2.8098 -1.8827 0.7367 17 7 2.0300 -0.7142 1.1838 18 6 1.8074 -0.3622 2.4657 19 8 1.1475 0.6237 2.7180 20 6 2.3784 -1.1936 3.5855 21 6 1.9864 -0.5900 4.9095 22 6 2.8313 0.2647 5.5514 23 6 2.4825 0.8366 6.7731 24 6 1.2871 0.5586 7.3639 25 6 0.3910 -0.3176 6.7325 26 6 -0.8550 -0.6420 7.2934 27 7 -1.6597 -1.4672 6.6657 28 6 -1.3520 -2.0238 5.5021 29 6 -0.1695 -1.7733 4.8752 30 6 0.7472 -0.8990 5.4874 31 1 -0.3632 0.5194 0.8867 32 1 -0.3632 0.5084 -0.8932 33 1 -0.3633 -1.0276 0.0063 34 1 2.6613 1.1157 -2.0619 35 1 3.4845 2.5389 -4.9643 36 1 4.1669 -0.8770 -0.6580 37 1 3.4812 -2.4157 -1.2791 38 1 3.6654 -2.0414 1.3931 39 1 2.1804 -2.7723 0.7132 40 1 3.4650 -1.2163 3.5035 41 1 1.9877 -2.2092 3.5196 42 1 3.7861 0.5028 5.1062 43 1 3.1714 1.5111 7.2598 44 1 1.0309 1.0093 8.3113 45 1 -1.1500 -0.2139 8.2400 46 1 -2.0600 -2.6945 5.0379 47 1 0.0607 -2.2372 3.9274 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000986413080.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:33:33 Heat of formation + Delta-G solvation = 13.912919 kcal Electronic energy + Delta-G solvation = -28864.690234 eV Core-core repulsion = 25011.525772 eV Total energy + Delta-G solvation = -3853.164462 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -41.98818 -41.08257 -39.00222 -38.15415 -35.90774 -34.87031 -33.41946 -32.44056 -32.17965 -31.52074 -30.73030 -28.43957 -26.85744 -25.17474 -24.85019 -24.53843 -23.91300 -22.28713 -21.46837 -20.02607 -19.11324 -18.96511 -18.11257 -17.97143 -17.72483 -17.27252 -16.58947 -16.13092 -15.89748 -15.51758 -15.47538 -15.27372 -15.08832 -14.77989 -14.71352 -14.56979 -14.33392 -13.91905 -13.72541 -13.51121 -13.35853 -13.13934 -13.02882 -12.93976 -12.87257 -12.64470 -12.57718 -12.51307 -12.21411 -12.09299 -11.92196 -11.71670 -11.53863 -11.14455 -10.92142 -10.78453 -10.47249 -9.99522 -9.65497 -9.03120 -8.95541 -7.94330 -5.24326 -0.58986 -0.03665 0.93318 1.48948 1.51711 1.57575 1.63427 1.91554 2.18792 2.57410 3.10697 3.37163 3.42545 3.53921 3.56718 3.72943 3.77531 3.85373 3.88298 3.95442 4.05265 4.10014 4.19056 4.23869 4.33744 4.36590 4.42636 4.43568 4.49340 4.53320 4.65316 4.72646 4.77618 4.84852 4.85678 4.93573 5.03544 5.10148 5.13377 5.19863 5.24854 5.34698 5.45831 5.47677 5.52993 5.54750 5.69179 5.93262 6.26015 6.59487 7.00392 7.17440 7.32291 8.04796 8.28217 9.29103 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.023399 B = 0.002329 C = 0.002257 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1196.361345 B =12019.715765 C =12402.155738 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.135 3.865 3 H 0.041 0.959 4 C 0.170 3.830 5 H 0.068 0.932 6 N -0.730 5.730 7 C -0.236 4.236 8 H 0.083 0.917 9 C -0.077 4.077 10 N -0.972 5.972 11 Si 0.974 3.026 12 H -0.278 1.278 13 H -0.301 1.301 14 H -0.274 1.274 15 C -0.148 4.148 16 C 0.103 3.897 17 N -0.609 5.609 18 C 0.525 3.475 19 O -0.579 6.579 20 C -0.091 4.091 21 C -0.077 4.077 22 C -0.093 4.093 23 C -0.123 4.123 24 C -0.088 4.088 25 C -0.132 4.132 26 C 0.142 3.858 27 N -0.516 5.516 28 C 0.061 3.939 29 C -0.161 4.161 30 C -0.028 4.028 31 H 0.048 0.952 32 H 0.054 0.946 33 H 0.070 0.930 34 H 0.370 0.630 35 H 0.250 0.750 36 H 0.055 0.945 37 H 0.089 0.911 38 H 0.105 0.895 39 H 0.095 0.905 40 H 0.132 0.868 41 H 0.126 0.874 42 H 0.140 0.860 43 H 0.155 0.845 44 H 0.164 0.836 45 H 0.192 0.808 46 H 0.167 0.833 47 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.918 -10.743 25.262 27.466 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.030 3.970 3 H 0.059 0.941 4 C 0.060 3.940 5 H 0.086 0.914 6 N -0.370 5.370 7 C -0.368 4.368 8 H 0.101 0.899 9 C -0.269 4.269 10 N -0.623 5.623 11 Si 0.803 3.197 12 H -0.204 1.204 13 H -0.227 1.227 14 H -0.200 1.200 15 C -0.189 4.189 16 C -0.018 4.018 17 N -0.343 5.343 18 C 0.315 3.685 19 O -0.458 6.458 20 C -0.130 4.130 21 C -0.078 4.078 22 C -0.113 4.113 23 C -0.140 4.140 24 C -0.108 4.108 25 C -0.134 4.134 26 C -0.029 4.029 27 N -0.225 5.225 28 C -0.081 4.081 29 C -0.180 4.180 30 C -0.034 4.034 31 H 0.067 0.933 32 H 0.073 0.927 33 H 0.089 0.911 34 H 0.202 0.798 35 H 0.059 0.941 36 H 0.074 0.926 37 H 0.107 0.893 38 H 0.123 0.877 39 H 0.113 0.887 40 H 0.150 0.850 41 H 0.144 0.856 42 H 0.158 0.842 43 H 0.172 0.828 44 H 0.181 0.819 45 H 0.209 0.791 46 H 0.184 0.816 47 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -2.140 -10.635 25.543 27.751 hybrid contribution 0.904 0.931 -1.858 2.266 sum -1.236 -9.704 23.685 25.625 Atomic orbital electron populations 1.21916 0.94555 1.02332 1.01306 1.21545 0.94535 0.95364 0.85566 0.94117 1.21428 0.95057 0.91065 0.86418 0.91436 1.42514 1.81165 1.09554 1.03725 1.19573 1.36864 0.95462 0.84854 0.89882 1.25587 1.03196 0.95880 1.02215 1.69832 1.54588 1.04444 1.33401 0.85211 0.78089 0.76594 0.79854 1.20418 1.22742 1.19999 1.23370 0.98832 1.01176 0.95481 1.22582 0.96096 0.87805 0.95349 1.48640 1.52484 1.28940 1.04256 1.20776 0.79958 0.85230 0.82559 1.90706 1.41882 1.29500 1.83728 1.20695 1.04383 1.00044 0.87833 1.19229 0.93697 0.99325 0.95510 1.21220 1.00205 0.94394 0.95439 1.21255 0.97633 0.99914 0.95223 1.21351 0.92984 0.95745 1.00672 1.19318 0.97731 1.00491 0.95881 1.23705 0.88173 0.91813 0.99201 1.67445 1.35147 1.09907 1.09977 1.22447 0.95898 0.98372 0.91400 1.22026 0.95352 0.99377 1.01278 1.18242 0.94584 0.96172 0.94357 0.93275 0.92695 0.91128 0.79824 0.94133 0.92601 0.89286 0.87680 0.88660 0.84963 0.85574 0.84171 0.82775 0.81850 0.79121 0.81595 0.83989 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.81 9.11 71.98 0.66 -4.15 16 2 C 0.13 4.69 3.21 45.35 0.15 4.84 16 3 H 0.04 1.71 7.70 -2.39 -0.02 1.69 16 4 C 0.17 6.22 3.11 46.18 0.14 6.36 16 5 H 0.07 2.43 7.82 -2.39 -0.02 2.41 16 6 N -0.73 -35.53 5.25 -317.31 -1.67 -37.20 16 7 C -0.24 -12.49 9.98 84.03 0.84 -11.65 16 8 H 0.08 4.12 7.83 -2.91 -0.02 4.09 16 9 C -0.08 -4.30 5.50 84.86 0.47 -3.83 16 10 N -0.97 -59.14 13.06 21.65 0.28 -58.85 16 11 Si 0.97 44.98 29.55 68.60 2.03 47.01 16 12 H -0.28 -12.37 7.11 99.48 0.71 -11.67 16 13 H -0.30 -14.26 7.11 99.48 0.71 -13.56 16 14 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 15 C -0.15 -4.28 6.77 31.98 0.22 -4.06 16 16 C 0.10 2.08 6.69 86.85 0.58 2.66 16 17 N -0.61 -16.62 3.06 -788.02 -2.41 -19.04 16 18 C 0.52 14.45 7.63 87.66 0.67 15.12 16 19 O -0.58 -21.40 15.08 -3.05 -0.05 -21.45 16 20 C -0.09 -1.61 4.28 29.10 0.12 -1.49 16 21 C -0.08 -1.62 4.38 -19.85 -0.09 -1.71 16 22 C -0.09 -1.71 9.58 22.07 0.21 -1.50 16 23 C -0.12 -1.87 9.94 22.06 0.22 -1.65 16 24 C -0.09 -1.35 9.81 22.31 0.22 -1.13 16 25 C -0.13 -2.71 5.74 -21.31 -0.12 -2.83 16 26 C 0.14 2.73 11.05 85.32 0.94 3.68 16 27 N -0.52 -11.95 10.30 -195.52 -2.01 -13.96 16 28 C 0.06 1.33 11.07 84.09 0.93 2.26 16 29 C -0.16 -3.52 9.36 22.39 0.21 -3.31 16 30 C -0.03 -0.65 5.75 -21.29 -0.12 -0.78 16 31 H 0.05 1.76 6.89 -2.39 -0.02 1.75 16 32 H 0.05 1.97 8.14 -2.38 -0.02 1.95 16 33 H 0.07 2.05 8.14 -2.39 -0.02 2.03 16 34 H 0.37 20.06 7.53 -92.71 -0.70 19.36 16 35 H 0.25 14.87 8.31 -92.71 -0.77 14.09 16 36 H 0.06 1.85 8.14 -2.39 -0.02 1.83 16 37 H 0.09 2.36 8.14 -2.38 -0.02 2.34 16 38 H 0.11 1.44 7.48 -2.39 -0.02 1.43 16 39 H 0.10 1.46 8.14 -2.39 -0.02 1.44 16 40 H 0.13 1.62 7.75 -2.39 -0.02 1.60 16 41 H 0.13 1.63 6.80 -2.38 -0.02 1.62 16 42 H 0.14 2.04 8.05 -2.91 -0.02 2.01 16 43 H 0.15 1.42 8.06 -2.91 -0.02 1.40 16 44 H 0.16 1.32 8.06 -2.91 -0.02 1.29 16 45 H 0.19 2.18 8.06 -2.91 -0.02 2.16 16 46 H 0.17 2.82 8.06 -2.91 -0.02 2.79 16 47 H 0.14 2.64 6.65 -2.91 -0.02 2.62 16 Total: -1.00 -75.98 386.33 2.70 -73.28 By element: Atomic # 1 Polarization: 33.09 SS G_CDS: 0.29 Total: 33.38 kcal Atomic # 6 Polarization: -9.41 SS G_CDS: 6.24 Total: -3.16 kcal Atomic # 7 Polarization: -123.24 SS G_CDS: -5.81 Total: -129.06 kcal Atomic # 8 Polarization: -21.40 SS G_CDS: -0.05 Total: -21.45 kcal Atomic # 14 Polarization: 44.98 SS G_CDS: 2.03 Total: 47.01 kcal Total: -75.98 2.70 -73.28 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000986413080.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.194 kcal (2) G-P(sol) polarization free energy of solvation -75.982 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.212 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.701 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.281 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.913 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds