Wall clock time and date at job start Tue Mar 31 2020 22:33:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09006 * 109.87449 * 2 1 4 4 C 1.54318 * 109.88589 * 121.01704 * 2 1 3 5 5 H 1.09003 * 110.71847 * 23.25059 * 4 2 1 6 6 N 1.46501 * 110.72340 * 259.97553 * 4 2 1 7 7 C 1.36940 * 120.00109 * 154.99771 * 6 4 2 8 8 H 1.08001 * 119.99911 * 0.02562 * 7 6 4 9 9 C 1.38808 * 119.99748 * 179.97438 * 7 6 4 10 10 N 1.31618 * 120.00176 * 0.02562 * 9 7 6 11 11 Si 1.86802 * 119.99856 * 179.97438 * 9 7 6 12 12 H 1.48497 * 109.46850 * 0.02562 * 11 9 7 13 13 H 1.48495 * 109.47158 * 120.00220 * 11 9 7 14 14 H 1.48501 * 109.47174 * 240.00348 * 11 9 7 15 15 C 1.55158 * 102.94590 * 141.60808 * 4 2 1 16 16 C 1.54914 * 101.58192 * 324.50345 * 15 4 2 17 17 N 1.47029 * 109.88442 * 238.82843 * 2 1 3 18 18 C 1.34777 * 125.64703 * 61.58893 * 17 2 1 19 19 O 1.21285 * 119.99926 * 0.02562 * 18 17 2 20 20 C 1.50697 * 119.99771 * 180.02562 * 18 17 2 21 21 C 1.50697 * 109.46945 * 180.02562 * 20 18 17 22 22 C 1.36257 * 120.25832 * 264.72230 * 21 20 18 23 23 C 1.39336 * 121.01642 * 179.76960 * 22 21 20 24 24 C 1.36205 * 121.08500 * 0.51294 * 23 22 21 25 25 C 1.40331 * 119.51607 * 359.75407 * 24 23 22 26 26 C 1.40442 * 122.08160 * 179.97438 * 25 24 23 27 27 N 1.31249 * 119.87836 * 180.02562 * 26 25 24 28 28 C 1.32606 * 122.78020 * 359.97438 * 27 26 25 29 29 C 1.36170 * 121.88500 * 0.02562 * 28 27 26 30 30 C 1.40191 * 120.26138 * 85.00401 * 21 20 18 31 31 H 1.09002 * 109.47153 * 298.98055 * 1 2 3 32 32 H 1.09001 * 109.46832 * 178.98246 * 1 2 3 33 33 H 1.09004 * 109.47261 * 58.98228 * 1 2 3 34 34 H 0.96997 * 119.99273 * 334.99826 * 6 4 2 35 35 H 0.97000 * 120.00003 * 180.02562 * 10 9 7 36 36 H 1.09003 * 111.00366 * 82.57268 * 15 4 2 37 37 H 1.08995 * 111.00914 * 206.38778 * 15 4 2 38 38 H 1.08999 * 110.36787 * 155.84172 * 16 15 4 39 39 H 1.08999 * 110.36029 * 278.05870 * 16 15 4 40 40 H 1.09001 * 109.47682 * 300.00397 * 20 18 17 41 41 H 1.09003 * 109.46941 * 60.00441 * 20 18 17 42 42 H 1.07995 * 119.49325 * 0.02569 * 22 21 20 43 43 H 1.07999 * 119.45535 * 180.24356 * 23 22 21 44 44 H 1.08000 * 120.23952 * 179.77320 * 24 23 22 45 45 H 1.08003 * 120.06561 * 359.97438 * 26 25 24 46 46 H 1.07995 * 119.06018 * 180.02562 * 28 27 26 47 47 H 1.08007 * 120.66999 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9006 1.0251 0.0000 4 6 2.0549 -0.7478 1.2437 5 1 1.3052 -1.4437 1.6201 6 7 2.4555 0.1992 2.2872 7 6 2.4583 -0.1896 3.6003 8 1 2.1655 -1.1945 3.8665 9 6 2.8384 0.7075 4.5889 10 7 3.1957 1.9320 4.2644 11 14 2.8415 0.1774 6.3801 12 1 2.4016 -1.2375 6.4782 13 1 4.2136 0.3081 6.9326 14 1 1.9123 1.0400 7.1532 15 6 3.2876 -1.5133 0.6944 16 6 2.8145 -1.8804 -0.7343 17 7 2.0301 -0.7157 -1.1830 18 6 1.8072 -0.3655 -2.4653 19 8 1.1431 0.6172 -2.7189 20 6 2.3831 -1.1950 -3.5838 21 6 1.9908 -0.5934 -4.9086 22 6 0.8961 -1.0556 -5.5754 23 6 0.5163 -0.5077 -6.7989 24 6 1.2330 0.4993 -7.3713 25 6 2.3698 0.9976 -6.7165 26 6 3.1480 2.0339 -7.2577 27 7 4.2034 2.4665 -6.6083 28 6 4.5829 1.9659 -5.4405 29 6 3.8963 0.9596 -4.8320 30 6 2.7527 0.4422 -5.4676 31 1 -0.3633 0.4979 0.8990 32 1 -0.3633 -1.0275 -0.0183 33 1 -0.3634 0.5296 -0.8807 34 1 2.7188 1.1016 2.0480 35 1 3.4616 2.5588 4.9552 36 1 4.1655 -0.8679 0.6615 37 1 3.4857 -2.4089 1.2832 38 1 3.6716 -2.0356 -1.3896 39 1 2.1903 -2.7735 -0.7093 40 1 3.4698 -1.2127 -3.5008 41 1 1.9971 -2.2122 -3.5178 42 1 0.3114 -1.8561 -5.1470 43 1 -0.3582 -0.8907 -7.3038 44 1 0.9283 0.9115 -8.3219 45 1 2.8791 2.4734 -8.2069 46 1 5.4616 2.3678 -4.9582 47 1 4.2233 0.5663 -3.8807 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000986413084.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:33:41 Heat of formation + Delta-G solvation = 33.836265 kcal Electronic energy + Delta-G solvation = -28880.465513 eV Core-core repulsion = 25028.164992 eV Total energy + Delta-G solvation = -3852.300521 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -41.17811 -39.92955 -37.91019 -37.17397 -34.18714 -34.03783 -31.87510 -31.44524 -30.98399 -30.59519 -29.28089 -27.53635 -25.25354 -24.38374 -23.77468 -23.16426 -22.75139 -21.33539 -20.11594 -18.81191 -18.22773 -17.37872 -17.19673 -16.99628 -16.82119 -15.93987 -15.40944 -14.93849 -14.75889 -14.55444 -14.31845 -14.11799 -13.86687 -13.68021 -13.51290 -13.43234 -13.01083 -12.88239 -12.70851 -12.40776 -12.15318 -12.10282 -11.94556 -11.80502 -11.63198 -11.22040 -11.20934 -11.06513 -10.88294 -10.63758 -10.31715 -10.26178 -10.05717 -9.82057 -9.65622 -9.61328 -9.22580 -8.99274 -8.44508 -8.19714 -7.07671 -5.85466 -3.16213 0.16424 0.74318 1.71245 2.72867 2.81143 3.16760 3.38078 3.43763 3.46187 3.90886 4.15990 4.28658 4.44840 4.51276 4.56242 4.62387 4.68330 4.80863 4.89881 4.96970 5.02609 5.15610 5.18549 5.23321 5.29735 5.43542 5.45654 5.54384 5.58593 5.59849 5.63480 5.75101 5.80740 5.84970 5.90346 6.04921 6.08635 6.14878 6.24649 6.27914 6.41372 6.44775 6.53906 6.57524 6.62553 6.70188 6.86666 7.62146 7.71477 7.81064 8.29351 8.32245 9.43278 9.97436 10.31982 11.36654 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.019591 B = 0.002447 C = 0.002315 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1428.864205 B =11439.351990 C =12094.537186 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.126 3.874 3 H 0.076 0.924 4 C 0.177 3.823 5 H 0.067 0.933 6 N -0.714 5.714 7 C -0.244 4.244 8 H 0.073 0.927 9 C -0.010 4.010 10 N -0.929 5.929 11 Si 0.908 3.092 12 H -0.280 1.280 13 H -0.291 1.291 14 H -0.291 1.291 15 C -0.157 4.157 16 C 0.097 3.903 17 N -0.609 5.609 18 C 0.527 3.473 19 O -0.532 6.532 20 C -0.102 4.102 21 C -0.052 4.052 22 C -0.089 4.089 23 C -0.115 4.115 24 C -0.091 4.091 25 C -0.111 4.111 26 C 0.142 3.858 27 N -0.489 5.489 28 C 0.075 3.925 29 C -0.148 4.148 30 C -0.007 4.007 31 H 0.069 0.931 32 H 0.049 0.951 33 H 0.060 0.940 34 H 0.386 0.614 35 H 0.256 0.744 36 H 0.075 0.925 37 H 0.076 0.924 38 H 0.068 0.932 39 H 0.066 0.934 40 H 0.103 0.897 41 H 0.105 0.895 42 H 0.126 0.874 43 H 0.127 0.873 44 H 0.132 0.868 45 H 0.162 0.838 46 H 0.153 0.847 47 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.809 -8.934 -23.577 25.278 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.022 3.978 3 H 0.094 0.906 4 C 0.065 3.935 5 H 0.085 0.915 6 N -0.354 5.354 7 C -0.375 4.375 8 H 0.091 0.909 9 C -0.206 4.206 10 N -0.576 5.576 11 Si 0.739 3.261 12 H -0.205 1.205 13 H -0.218 1.218 14 H -0.218 1.218 15 C -0.198 4.198 16 C -0.026 4.026 17 N -0.344 5.344 18 C 0.314 3.686 19 O -0.409 6.409 20 C -0.142 4.142 21 C -0.052 4.052 22 C -0.108 4.108 23 C -0.133 4.133 24 C -0.110 4.110 25 C -0.113 4.113 26 C -0.029 4.029 27 N -0.197 5.197 28 C -0.068 4.068 29 C -0.167 4.167 30 C -0.012 4.012 31 H 0.088 0.912 32 H 0.068 0.932 33 H 0.079 0.921 34 H 0.220 0.780 35 H 0.066 0.934 36 H 0.093 0.907 37 H 0.095 0.905 38 H 0.086 0.914 39 H 0.084 0.916 40 H 0.121 0.879 41 H 0.123 0.877 42 H 0.144 0.856 43 H 0.145 0.855 44 H 0.150 0.850 45 H 0.179 0.821 46 H 0.170 0.830 47 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -1.592 -7.767 -23.810 25.095 hybrid contribution -0.323 -0.698 1.463 1.653 sum -1.915 -8.466 -22.347 23.973 Atomic orbital electron populations 1.22034 0.94956 1.01476 1.02697 1.21959 0.94423 0.96913 0.84475 0.90559 1.21235 0.93511 0.91575 0.87187 0.91486 1.42360 1.79238 1.11865 1.01943 1.19249 1.38457 0.96955 0.82872 0.90932 1.24774 1.01866 0.95861 0.98143 1.69674 1.51036 1.04628 1.32302 0.86113 0.77238 0.77626 0.85140 1.20488 1.21811 1.21787 1.23581 1.01454 1.01781 0.92984 1.22400 0.94559 0.88367 0.97313 1.48594 1.52210 1.28660 1.04920 1.19975 0.81030 0.85444 0.82131 1.90725 1.39718 1.27392 1.83076 1.20680 1.03032 1.00083 0.90358 1.19059 0.95727 0.95703 0.94758 1.20827 0.95390 0.99737 0.94853 1.20862 0.99904 0.96897 0.95634 1.20946 0.93910 0.96507 0.99684 1.18989 0.97861 0.98865 0.95618 1.23176 0.89588 0.91690 0.98483 1.67412 1.15586 1.27972 1.08726 1.22163 0.99429 0.93838 0.91321 1.21911 0.95509 0.98544 1.00764 1.17931 0.94751 0.94993 0.93543 0.91163 0.93182 0.92084 0.77980 0.93381 0.90661 0.90516 0.91387 0.91624 0.87912 0.87717 0.85645 0.85506 0.85005 0.82101 0.82975 0.84789 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.55 9.09 37.16 0.34 -2.21 16 2 C 0.13 2.18 3.21 -66.95 -0.22 1.96 16 3 H 0.08 1.52 7.71 -51.93 -0.40 1.12 16 4 C 0.18 3.27 3.14 -66.10 -0.21 3.06 16 5 H 0.07 1.24 7.80 -51.93 -0.41 0.84 16 6 N -0.71 -17.00 5.22 -51.65 -0.27 -17.27 16 7 C -0.24 -6.45 9.96 -15.06 -0.15 -6.60 16 8 H 0.07 1.85 7.83 -52.49 -0.41 1.44 16 9 C -0.01 -0.27 5.50 -17.43 -0.10 -0.37 16 10 N -0.93 -27.39 13.06 55.49 0.72 -26.67 16 11 Si 0.91 21.71 29.55 -169.99 -5.02 16.69 16 12 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 13 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 14 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 15 C -0.16 -2.40 6.77 -24.58 -0.17 -2.57 16 16 C 0.10 1.15 6.69 -2.53 -0.02 1.13 16 17 N -0.61 -8.81 3.07 -163.01 -0.50 -9.31 16 18 C 0.53 7.62 7.64 -10.99 -0.08 7.54 16 19 O -0.53 -9.81 15.08 5.55 0.08 -9.72 16 20 C -0.10 -1.05 4.29 -29.04 -0.12 -1.17 16 21 C -0.05 -0.59 4.38 -104.60 -0.46 -1.05 16 22 C -0.09 -0.87 9.58 -39.89 -0.38 -1.26 16 23 C -0.11 -0.99 9.94 -39.90 -0.40 -1.39 16 24 C -0.09 -0.80 9.81 -39.53 -0.39 -1.19 16 25 C -0.11 -1.24 5.74 -106.86 -0.61 -1.86 16 26 C 0.14 1.51 11.05 -16.97 -0.19 1.32 16 27 N -0.49 -6.12 10.30 -13.15 -0.14 -6.25 16 28 C 0.08 0.90 11.07 -17.96 -0.20 0.70 16 29 C -0.15 -1.79 9.36 -39.40 -0.37 -2.15 16 30 C -0.01 -0.09 5.75 -106.82 -0.61 -0.70 16 31 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 32 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 33 H 0.06 1.06 6.90 -51.93 -0.36 0.70 16 34 H 0.39 9.99 7.56 -40.82 -0.31 9.68 16 35 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 36 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 37 H 0.08 1.12 8.14 -51.93 -0.42 0.70 16 38 H 0.07 0.64 7.48 -51.93 -0.39 0.25 16 39 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 40 H 0.10 0.89 6.50 -51.93 -0.34 0.56 16 41 H 0.10 0.81 8.04 -51.93 -0.42 0.39 16 42 H 0.13 0.99 8.05 -52.49 -0.42 0.56 16 43 H 0.13 0.75 8.06 -52.49 -0.42 0.33 16 44 H 0.13 0.75 8.06 -52.49 -0.42 0.33 16 45 H 0.16 1.14 8.06 -52.48 -0.42 0.72 16 46 H 0.15 1.49 8.06 -52.49 -0.42 1.07 16 47 H 0.13 1.47 6.65 -52.48 -0.35 1.12 16 LS Contribution 386.33 15.07 5.82 5.82 Total: -1.00 -33.43 386.33 -10.37 -43.79 By element: Atomic # 1 Polarization: 16.45 SS G_CDS: -6.74 Total: 9.71 kcal Atomic # 6 Polarization: -2.47 SS G_CDS: -4.33 Total: -6.79 kcal Atomic # 7 Polarization: -59.32 SS G_CDS: -0.18 Total: -59.50 kcal Atomic # 8 Polarization: -9.81 SS G_CDS: 0.08 Total: -9.72 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -5.02 Total: 16.69 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -33.43 -10.37 -43.79 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000986413084.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.631 kcal (2) G-P(sol) polarization free energy of solvation -33.429 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.202 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.366 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.795 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.836 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds