Wall clock time and date at job start Tue Mar 31 2020 22:32:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09004 * 109.87280 * 2 1 4 4 C 1.54325 * 109.88413 * 238.98354 * 2 1 3 5 5 H 1.08997 * 110.72163 * 336.60220 * 4 2 1 6 6 N 1.46503 * 110.87087 * 99.80075 * 4 2 1 7 7 C 1.36939 * 119.99620 * 200.06164 * 6 4 2 8 8 H 1.08002 * 120.00422 * 0.02562 * 7 6 4 9 9 C 1.38815 * 119.99685 * 180.02562 * 7 6 4 10 10 N 1.31619 * 120.00122 * 359.97438 * 9 7 6 11 11 Si 1.86805 * 119.99767 * 180.02562 * 9 7 6 12 12 H 1.48500 * 109.47141 * 89.99743 * 11 9 7 13 13 H 1.48504 * 109.46505 * 209.99575 * 11 9 7 14 14 H 1.48500 * 109.46946 * 329.99486 * 11 9 7 15 15 C 1.55154 * 102.94303 * 218.23776 * 4 2 1 16 16 C 1.54908 * 101.58289 * 35.49976 * 15 4 2 17 17 N 1.47290 * 110.00093 * 121.06049 * 2 1 3 18 18 C 1.34774 * 125.79121 * 298.43214 * 17 2 1 19 19 O 1.21280 * 120.00501 * 0.02562 * 18 17 2 20 20 C 1.50698 * 119.99753 * 180.02562 * 18 17 2 21 21 C 1.50698 * 109.47230 * 179.97438 * 20 18 17 22 22 C 1.39351 * 119.46948 * 89.99250 * 21 20 18 23 23 C 1.36147 * 120.86958 * 180.02562 * 22 21 20 24 24 C 1.40425 * 119.61322 * 0.02562 * 23 22 21 25 25 C 1.40765 * 121.37463 * 179.97438 * 24 23 22 26 26 C 1.36580 * 118.15388 * 180.02562 * 25 24 23 27 27 C 1.39335 * 119.93049 * 0.02562 * 26 25 24 28 28 N 1.31095 * 121.74733 * 359.97327 * 27 26 25 29 29 C 1.33681 * 121.32304 * 0.02941 * 28 27 26 30 30 C 1.36083 * 119.46630 * 269.72884 * 21 20 18 31 31 H 1.08995 * 109.47174 * 181.01182 * 1 2 3 32 32 H 1.08995 * 109.47106 * 301.02210 * 1 2 3 33 33 H 1.09007 * 109.46933 * 61.01664 * 1 2 3 34 34 H 0.96998 * 120.00254 * 20.06980 * 6 4 2 35 35 H 0.96995 * 119.99947 * 179.97438 * 10 9 7 36 36 H 1.09008 * 111.00345 * 277.42446 * 15 4 2 37 37 H 1.08999 * 111.00564 * 153.57779 * 15 4 2 38 38 H 1.09002 * 110.36632 * 81.83114 * 16 15 4 39 39 H 1.08995 * 110.36781 * 204.04351 * 16 15 4 40 40 H 1.09001 * 109.47204 * 299.99785 * 20 18 17 41 41 H 1.09000 * 109.47543 * 59.99762 * 20 18 17 42 42 H 1.07995 * 119.56702 * 359.97438 * 22 21 20 43 43 H 1.08001 * 120.19168 * 179.97438 * 23 22 21 44 44 H 1.08002 * 120.92535 * 0.02562 * 25 24 23 45 45 H 1.07995 * 120.03753 * 179.97438 * 26 25 24 46 46 H 1.08001 * 119.12638 * 179.97438 * 27 26 25 47 47 H 1.08001 * 120.12225 * 359.97438 * 30 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9005 1.0251 0.0000 4 6 2.0549 -0.7478 -1.2437 5 1 1.3062 -1.4456 -1.6187 6 7 2.4515 0.1962 -2.2915 7 6 2.5504 -0.2250 -3.5908 8 1 2.3356 -1.2529 -3.8432 9 6 2.9268 0.6693 -4.5835 10 7 3.1881 1.9221 -4.2761 11 14 3.0609 0.0949 -6.3560 12 1 1.7528 0.2755 -7.0353 13 1 4.0976 0.8937 -7.0579 14 1 3.4392 -1.3408 -6.3838 15 6 3.2900 -1.5101 -0.6954 16 6 2.8195 -1.8770 0.7342 17 7 2.0338 -0.7141 1.1856 18 6 1.8143 -0.3646 2.4686 19 8 1.1489 0.6166 2.7246 20 6 2.3956 -1.1929 3.5852 21 6 2.0063 -0.5924 4.9114 22 6 0.8267 -1.0023 5.5297 23 6 0.4473 -0.4782 6.7277 24 6 1.2544 0.4885 7.3490 25 6 0.8975 1.0553 8.5871 26 6 1.7307 1.9904 9.1318 27 6 2.8959 2.3579 8.4620 28 7 3.2250 1.8279 7.3090 29 6 2.4536 0.9076 6.7216 30 6 2.8152 0.3375 5.4884 31 1 -0.3633 -1.0275 0.0181 32 1 -0.3633 0.5296 0.8806 33 1 -0.3633 0.4980 -0.8990 34 1 2.6442 1.1194 -2.0650 35 1 3.4514 2.5469 -4.9698 36 1 4.1665 -0.8628 -0.6642 37 1 3.4888 -2.4062 -1.2833 38 1 2.1955 -2.7704 0.7107 39 1 3.6778 -2.0317 1.3880 40 1 2.0116 -2.2110 3.5203 41 1 3.4821 -1.2083 3.4987 42 1 0.2048 -1.7448 5.0520 43 1 -0.4694 -0.8035 7.1969 44 1 -0.0099 0.7589 9.0923 45 1 1.4862 2.4452 10.0803 46 1 3.5451 3.0990 8.9043 47 1 3.7284 0.6406 4.9980 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000986421320.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:32:51 Heat of formation + Delta-G solvation = 33.625617 kcal Electronic energy + Delta-G solvation = -28258.052772 eV Core-core repulsion = 24405.743117 eV Total energy + Delta-G solvation = -3852.309655 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.07358 -39.98069 -37.98625 -36.94205 -34.13714 -33.87596 -32.44267 -31.47066 -30.88024 -30.33578 -29.30461 -27.71622 -25.21928 -24.34358 -23.52110 -22.99552 -22.40973 -22.03799 -20.15568 -18.88731 -18.05071 -17.28863 -17.21858 -17.02390 -16.81801 -15.96822 -15.17185 -14.83901 -14.71373 -14.59258 -14.40480 -14.31266 -13.83810 -13.63808 -13.38788 -13.28617 -13.14805 -12.95827 -12.69993 -12.32246 -12.13175 -11.90142 -11.78927 -11.65621 -11.59991 -11.55342 -11.16534 -11.04803 -10.84652 -10.75590 -10.60489 -10.26590 -10.03052 -9.78772 -9.71272 -9.59565 -8.96389 -8.86939 -8.43661 -8.40275 -7.04683 -5.82784 -3.13432 0.19000 0.59140 1.79631 2.63823 2.78213 3.20206 3.40056 3.45224 3.47105 3.91501 4.03120 4.32745 4.42520 4.53386 4.56536 4.62668 4.67491 4.77315 4.87792 5.00931 5.03709 5.15919 5.24332 5.26642 5.32897 5.38028 5.46852 5.56268 5.59007 5.64684 5.70093 5.74897 5.77853 5.87538 5.92882 6.07640 6.11911 6.13185 6.27552 6.28795 6.33564 6.44642 6.57057 6.59998 6.62622 6.72248 6.91352 7.64085 7.70784 7.75859 8.33195 8.35488 9.45868 10.00493 10.35063 11.39346 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.025114 B = 0.002045 C = 0.001994 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1114.654259 B =13691.044696 C =14038.211764 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.128 3.872 3 H 0.077 0.923 4 C 0.176 3.824 5 H 0.064 0.936 6 N -0.715 5.715 7 C -0.243 4.243 8 H 0.072 0.928 9 C -0.011 4.011 10 N -0.929 5.929 11 Si 0.909 3.091 12 H -0.289 1.289 13 H -0.291 1.291 14 H -0.281 1.281 15 C -0.156 4.156 16 C 0.097 3.903 17 N -0.610 5.610 18 C 0.528 3.472 19 O -0.535 6.535 20 C -0.102 4.102 21 C -0.041 4.041 22 C -0.095 4.095 23 C -0.099 4.099 24 C -0.103 4.103 25 C -0.058 4.058 26 C -0.180 4.180 27 C 0.127 3.873 28 N -0.472 5.472 29 C 0.130 3.870 30 C -0.079 4.079 31 H 0.049 0.951 32 H 0.060 0.940 33 H 0.069 0.931 34 H 0.386 0.614 35 H 0.257 0.743 36 H 0.075 0.925 37 H 0.076 0.924 38 H 0.065 0.935 39 H 0.069 0.931 40 H 0.104 0.896 41 H 0.105 0.895 42 H 0.127 0.873 43 H 0.130 0.870 44 H 0.137 0.863 45 H 0.136 0.864 46 H 0.158 0.842 47 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.361 -8.015 26.503 27.891 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.024 3.976 3 H 0.095 0.905 4 C 0.065 3.935 5 H 0.082 0.918 6 N -0.356 5.356 7 C -0.374 4.374 8 H 0.090 0.910 9 C -0.207 4.207 10 N -0.577 5.577 11 Si 0.739 3.261 12 H -0.217 1.217 13 H -0.218 1.218 14 H -0.207 1.207 15 C -0.197 4.197 16 C -0.026 4.026 17 N -0.345 5.345 18 C 0.315 3.685 19 O -0.412 6.412 20 C -0.142 4.142 21 C -0.043 4.043 22 C -0.113 4.113 23 C -0.118 4.118 24 C -0.105 4.105 25 C -0.084 4.084 26 C -0.200 4.200 27 C -0.046 4.046 28 N -0.180 5.180 29 C 0.009 3.991 30 C -0.098 4.098 31 H 0.069 0.931 32 H 0.080 0.920 33 H 0.088 0.912 34 H 0.220 0.780 35 H 0.066 0.934 36 H 0.094 0.906 37 H 0.094 0.906 38 H 0.083 0.917 39 H 0.087 0.913 40 H 0.122 0.878 41 H 0.123 0.877 42 H 0.145 0.855 43 H 0.148 0.852 44 H 0.155 0.845 45 H 0.154 0.846 46 H 0.175 0.825 47 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -2.965 -7.335 25.997 27.175 hybrid contribution -0.542 -0.201 -0.520 0.778 sum -3.507 -7.537 25.477 26.799 Atomic orbital electron populations 1.22031 0.94913 1.01510 1.02692 1.21931 0.94357 0.96913 0.84372 0.90529 1.21232 0.93513 0.91646 0.87147 0.91802 1.42347 1.81070 1.09095 1.03041 1.19191 1.39362 0.95107 0.83785 0.90991 1.24779 1.02105 0.95654 0.98180 1.69665 1.52497 1.03012 1.32516 0.86177 0.77355 0.77605 0.84929 1.21655 1.21759 1.20699 1.23567 1.01446 1.01751 0.92954 1.22401 0.94581 0.88351 0.97300 1.48647 1.52083 1.28815 1.04912 1.19984 0.80954 0.85399 0.82113 1.90721 1.39862 1.27540 1.83029 1.20737 1.03122 1.00066 0.90279 1.19059 0.94455 0.96277 0.94550 1.20780 0.95695 0.99871 0.94977 1.20898 0.99056 0.96108 0.95739 1.18842 0.96508 0.99004 0.96150 1.21464 0.98875 0.94483 0.93546 1.21867 0.96502 0.99674 1.01967 1.22958 0.94551 0.96722 0.90375 1.68038 1.31500 1.08410 1.10059 1.18800 0.91094 0.94175 0.95007 1.20614 1.00481 0.95351 0.93317 0.93144 0.92048 0.91177 0.77985 0.93353 0.90603 0.90557 0.91665 0.91298 0.87751 0.87709 0.85511 0.85194 0.84519 0.84642 0.82496 0.84763 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.56 9.11 37.16 0.34 -2.22 16 2 C 0.13 2.24 3.22 -66.80 -0.21 2.03 16 3 H 0.08 1.54 7.70 -51.93 -0.40 1.14 16 4 C 0.18 3.31 3.11 -66.09 -0.21 3.11 16 5 H 0.06 1.20 7.83 -51.93 -0.41 0.79 16 6 N -0.72 -17.24 5.25 -51.65 -0.27 -17.51 16 7 C -0.24 -6.48 9.98 -15.06 -0.15 -6.63 16 8 H 0.07 1.84 7.83 -52.49 -0.41 1.43 16 9 C -0.01 -0.30 5.50 -17.43 -0.10 -0.39 16 10 N -0.93 -27.63 13.06 55.49 0.72 -26.90 16 11 Si 0.91 21.86 29.55 -169.99 -5.02 16.84 16 12 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 13 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 14 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 15 C -0.16 -2.46 6.77 -24.58 -0.17 -2.63 16 16 C 0.10 1.18 6.68 -2.53 -0.02 1.17 16 17 N -0.61 -9.04 3.08 -162.82 -0.50 -9.55 16 18 C 0.53 7.81 7.64 -10.99 -0.08 7.73 16 19 O -0.53 -10.01 15.11 5.56 0.08 -9.92 16 20 C -0.10 -1.06 4.80 -29.04 -0.14 -1.20 16 21 C -0.04 -0.48 4.34 -104.98 -0.46 -0.93 16 22 C -0.10 -0.98 9.59 -39.92 -0.38 -1.37 16 23 C -0.10 -0.96 9.78 -39.51 -0.39 -1.35 16 24 C -0.10 -1.14 5.74 -106.80 -0.61 -1.75 16 25 C -0.06 -0.49 9.90 -39.23 -0.39 -0.87 16 26 C -0.18 -1.38 10.03 -39.77 -0.40 -1.78 16 27 C 0.13 1.19 11.15 -17.46 -0.19 1.00 16 28 N -0.47 -6.07 10.34 -10.97 -0.11 -6.18 16 29 C 0.13 1.70 6.60 -84.86 -0.56 1.14 16 30 C -0.08 -1.01 9.58 -39.47 -0.38 -1.39 16 31 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 32 H 0.06 1.07 6.93 -51.93 -0.36 0.71 16 33 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 34 H 0.39 10.11 7.52 -40.82 -0.31 9.80 16 35 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 36 H 0.08 1.33 8.14 -51.92 -0.42 0.90 16 37 H 0.08 1.14 8.14 -51.93 -0.42 0.72 16 38 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 39 H 0.07 0.68 7.47 -51.93 -0.39 0.29 16 40 H 0.10 0.81 8.08 -51.93 -0.42 0.39 16 41 H 0.10 0.91 7.77 -51.93 -0.40 0.51 16 42 H 0.13 1.05 8.06 -52.49 -0.42 0.63 16 43 H 0.13 0.88 8.06 -52.49 -0.42 0.46 16 44 H 0.14 0.74 8.06 -52.49 -0.42 0.31 16 45 H 0.14 0.60 8.06 -52.49 -0.42 0.18 16 46 H 0.16 0.98 8.06 -52.49 -0.42 0.55 16 47 H 0.13 1.67 8.06 -52.49 -0.42 1.24 16 LS Contribution 389.72 15.07 5.87 5.87 Total: -1.00 -33.99 389.72 -10.60 -44.59 By element: Atomic # 1 Polarization: 15.98 SS G_CDS: -6.88 Total: 9.10 kcal Atomic # 6 Polarization: -1.85 SS G_CDS: -4.49 Total: -6.34 kcal Atomic # 7 Polarization: -59.98 SS G_CDS: -0.16 Total: -60.14 kcal Atomic # 8 Polarization: -10.01 SS G_CDS: 0.08 Total: -9.92 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -5.02 Total: 16.84 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -33.99 -10.60 -44.59 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000986421320.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.219 kcal (2) G-P(sol) polarization free energy of solvation -33.992 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.227 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.601 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.594 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.626 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds