Wall clock time and date at job start Tue Mar 31 2020 22:32:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09004 * 109.87280 * 2 1 4 4 C 1.54325 * 109.88413 * 238.98354 * 2 1 3 5 5 H 1.08997 * 110.72163 * 336.60220 * 4 2 1 6 6 N 1.46503 * 110.87087 * 99.80075 * 4 2 1 7 7 C 1.36939 * 119.99620 * 200.06164 * 6 4 2 8 8 H 1.08002 * 120.00422 * 0.02562 * 7 6 4 9 9 C 1.38815 * 119.99685 * 180.02562 * 7 6 4 10 10 N 1.31619 * 120.00122 * 359.97438 * 9 7 6 11 11 Si 1.86805 * 119.99767 * 180.02562 * 9 7 6 12 12 H 1.48500 * 109.47141 * 89.99743 * 11 9 7 13 13 H 1.48504 * 109.46505 * 209.99575 * 11 9 7 14 14 H 1.48500 * 109.46946 * 329.99486 * 11 9 7 15 15 C 1.55154 * 102.94303 * 218.23776 * 4 2 1 16 16 C 1.54908 * 101.58289 * 35.49976 * 15 4 2 17 17 N 1.47290 * 110.00093 * 121.06049 * 2 1 3 18 18 C 1.34774 * 125.79121 * 298.43214 * 17 2 1 19 19 O 1.21280 * 120.00501 * 0.02562 * 18 17 2 20 20 C 1.50698 * 119.99753 * 180.02562 * 18 17 2 21 21 C 1.50698 * 109.47230 * 179.97438 * 20 18 17 22 22 C 1.39351 * 119.46948 * 89.99250 * 21 20 18 23 23 C 1.36147 * 120.86958 * 180.02562 * 22 21 20 24 24 C 1.40425 * 119.61322 * 0.02562 * 23 22 21 25 25 C 1.40765 * 121.37463 * 179.97438 * 24 23 22 26 26 C 1.36580 * 118.15388 * 180.02562 * 25 24 23 27 27 C 1.39335 * 119.93049 * 0.02562 * 26 25 24 28 28 N 1.31095 * 121.74733 * 359.97327 * 27 26 25 29 29 C 1.33681 * 121.32304 * 0.02941 * 28 27 26 30 30 C 1.36083 * 119.46630 * 269.72884 * 21 20 18 31 31 H 1.08995 * 109.47174 * 181.01182 * 1 2 3 32 32 H 1.08995 * 109.47106 * 301.02210 * 1 2 3 33 33 H 1.09007 * 109.46933 * 61.01664 * 1 2 3 34 34 H 0.96998 * 120.00254 * 20.06980 * 6 4 2 35 35 H 0.96995 * 119.99947 * 179.97438 * 10 9 7 36 36 H 1.09008 * 111.00345 * 277.42446 * 15 4 2 37 37 H 1.08999 * 111.00564 * 153.57779 * 15 4 2 38 38 H 1.09002 * 110.36632 * 81.83114 * 16 15 4 39 39 H 1.08995 * 110.36781 * 204.04351 * 16 15 4 40 40 H 1.09001 * 109.47204 * 299.99785 * 20 18 17 41 41 H 1.09000 * 109.47543 * 59.99762 * 20 18 17 42 42 H 1.07995 * 119.56702 * 359.97438 * 22 21 20 43 43 H 1.08001 * 120.19168 * 179.97438 * 23 22 21 44 44 H 1.08002 * 120.92535 * 0.02562 * 25 24 23 45 45 H 1.07995 * 120.03753 * 179.97438 * 26 25 24 46 46 H 1.08001 * 119.12638 * 179.97438 * 27 26 25 47 47 H 1.08001 * 120.12225 * 359.97438 * 30 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9005 1.0251 0.0000 4 6 2.0549 -0.7478 -1.2437 5 1 1.3062 -1.4456 -1.6187 6 7 2.4515 0.1962 -2.2915 7 6 2.5504 -0.2250 -3.5908 8 1 2.3356 -1.2529 -3.8432 9 6 2.9268 0.6693 -4.5835 10 7 3.1881 1.9221 -4.2761 11 14 3.0609 0.0949 -6.3560 12 1 1.7528 0.2755 -7.0353 13 1 4.0976 0.8937 -7.0579 14 1 3.4392 -1.3408 -6.3838 15 6 3.2900 -1.5101 -0.6954 16 6 2.8195 -1.8770 0.7342 17 7 2.0338 -0.7141 1.1856 18 6 1.8143 -0.3646 2.4686 19 8 1.1489 0.6166 2.7246 20 6 2.3956 -1.1929 3.5852 21 6 2.0063 -0.5924 4.9114 22 6 0.8267 -1.0023 5.5297 23 6 0.4473 -0.4782 6.7277 24 6 1.2544 0.4885 7.3490 25 6 0.8975 1.0553 8.5871 26 6 1.7307 1.9904 9.1318 27 6 2.8959 2.3579 8.4620 28 7 3.2250 1.8279 7.3090 29 6 2.4536 0.9076 6.7216 30 6 2.8152 0.3375 5.4884 31 1 -0.3633 -1.0275 0.0181 32 1 -0.3633 0.5296 0.8806 33 1 -0.3633 0.4980 -0.8990 34 1 2.6442 1.1194 -2.0650 35 1 3.4514 2.5469 -4.9698 36 1 4.1665 -0.8628 -0.6642 37 1 3.4888 -2.4062 -1.2833 38 1 2.1955 -2.7704 0.7107 39 1 3.6778 -2.0317 1.3880 40 1 2.0116 -2.2110 3.5203 41 1 3.4821 -1.2083 3.4987 42 1 0.2048 -1.7448 5.0520 43 1 -0.4694 -0.8035 7.1969 44 1 -0.0099 0.7589 9.0923 45 1 1.4862 2.4452 10.0803 46 1 3.5451 3.0990 8.9043 47 1 3.7284 0.6406 4.9980 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000986421320.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:32:50 Heat of formation + Delta-G solvation = 12.453506 kcal Electronic energy + Delta-G solvation = -28258.970864 eV Core-core repulsion = 24405.743117 eV Total energy + Delta-G solvation = -3853.227747 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -41.84667 -41.15079 -39.09801 -37.95523 -35.89974 -34.63104 -33.61443 -32.86718 -32.16082 -31.09246 -30.82221 -28.64656 -26.84194 -25.13002 -24.84854 -24.28112 -23.31639 -22.96157 -21.59314 -20.13461 -19.10521 -18.78053 -18.08929 -17.92658 -17.79649 -17.22943 -16.54579 -16.21812 -15.60227 -15.48162 -15.42231 -15.28376 -15.17463 -14.96570 -14.71365 -14.52084 -14.06881 -13.89575 -13.80663 -13.59117 -13.35318 -13.12307 -12.98238 -12.89284 -12.63885 -12.62835 -12.48870 -12.42432 -12.27070 -12.17288 -12.06078 -11.71069 -11.52920 -11.48511 -10.94007 -10.81864 -10.44364 -9.64275 -9.63495 -9.19917 -9.02683 -7.94048 -5.24203 -0.52440 -0.15228 1.04639 1.48913 1.50660 1.58889 1.65196 1.80707 2.15707 2.57607 3.13336 3.31371 3.37728 3.56864 3.63038 3.70051 3.78450 3.88814 3.91499 4.04482 4.07392 4.11061 4.19538 4.21788 4.31621 4.37903 4.43948 4.53162 4.56439 4.58488 4.61990 4.67671 4.77571 4.87488 4.95288 5.02967 5.06073 5.07205 5.15545 5.22338 5.25621 5.35580 5.40680 5.48305 5.50846 5.55448 5.63662 5.92141 6.26162 6.61194 6.97730 7.18606 7.32198 8.04849 8.28311 9.29611 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.025114 B = 0.002045 C = 0.001994 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1114.654259 B =13691.044696 C =14038.211764 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.133 3.867 3 H 0.038 0.962 4 C 0.170 3.830 5 H 0.071 0.929 6 N -0.731 5.731 7 C -0.234 4.234 8 H 0.085 0.915 9 C -0.080 4.080 10 N -0.973 5.973 11 Si 0.975 3.025 12 H -0.289 1.289 13 H -0.301 1.301 14 H -0.263 1.263 15 C -0.149 4.149 16 C 0.104 3.896 17 N -0.610 5.610 18 C 0.524 3.476 19 O -0.582 6.582 20 C -0.091 4.091 21 C -0.047 4.047 22 C -0.111 4.111 23 C -0.095 4.095 24 C -0.124 4.124 25 C -0.058 4.058 26 C -0.177 4.177 27 C 0.120 3.880 28 N -0.518 5.518 29 C 0.099 3.901 30 C -0.110 4.110 31 H 0.072 0.928 32 H 0.049 0.951 33 H 0.054 0.946 34 H 0.369 0.631 35 H 0.249 0.751 36 H 0.052 0.948 37 H 0.090 0.910 38 H 0.100 0.900 39 H 0.103 0.897 40 H 0.143 0.857 41 H 0.123 0.877 42 H 0.150 0.850 43 H 0.163 0.837 44 H 0.172 0.828 45 H 0.174 0.826 46 H 0.183 0.817 47 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.446 -11.131 28.672 31.076 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.028 3.972 3 H 0.056 0.944 4 C 0.060 3.940 5 H 0.089 0.911 6 N -0.370 5.370 7 C -0.365 4.365 8 H 0.103 0.897 9 C -0.271 4.271 10 N -0.624 5.624 11 Si 0.804 3.196 12 H -0.217 1.217 13 H -0.228 1.228 14 H -0.188 1.188 15 C -0.190 4.190 16 C -0.018 4.018 17 N -0.344 5.344 18 C 0.315 3.685 19 O -0.462 6.462 20 C -0.130 4.130 21 C -0.049 4.049 22 C -0.129 4.129 23 C -0.113 4.113 24 C -0.126 4.126 25 C -0.084 4.084 26 C -0.196 4.196 27 C -0.053 4.053 28 N -0.227 5.227 29 C -0.021 4.021 30 C -0.129 4.129 31 H 0.091 0.909 32 H 0.069 0.931 33 H 0.073 0.927 34 H 0.201 0.799 35 H 0.058 0.942 36 H 0.071 0.929 37 H 0.108 0.892 38 H 0.118 0.882 39 H 0.121 0.879 40 H 0.161 0.839 41 H 0.141 0.859 42 H 0.167 0.833 43 H 0.180 0.820 44 H 0.189 0.811 45 H 0.191 0.809 46 H 0.200 0.800 47 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -4.048 -10.539 28.199 30.375 hybrid contribution -0.236 0.816 -1.023 1.329 sum -4.283 -9.724 27.176 29.180 Atomic orbital electron populations 1.21908 0.94249 1.02493 1.01364 1.21612 0.94808 0.95214 0.85525 0.94421 1.21447 0.95114 0.91079 0.86341 0.91087 1.42547 1.81477 1.09287 1.03720 1.19627 1.36790 0.95374 0.84747 0.89704 1.25618 1.03327 0.95888 1.02315 1.69842 1.54932 1.04315 1.33275 0.85120 0.76742 0.77771 0.79998 1.21670 1.22760 1.18788 1.23385 0.98794 1.01203 0.95625 1.22581 0.96029 0.88033 0.95143 1.48701 1.52198 1.29268 1.04251 1.20800 0.80067 0.85070 0.82598 1.90704 1.42063 1.29724 1.83665 1.20784 1.04011 1.00697 0.87545 1.19255 0.94790 0.95935 0.94920 1.21095 0.95559 1.00710 0.95504 1.21318 0.99618 0.94939 0.95428 1.19185 0.96176 0.99816 0.97452 1.21927 1.00022 0.93918 0.92542 1.22275 0.95301 0.99053 1.02981 1.23573 0.95665 0.96481 0.89541 1.68017 1.32900 1.09798 1.11935 1.19078 0.92428 0.94994 0.95592 1.20702 1.00964 0.96926 0.94259 0.90873 0.93141 0.92691 0.79906 0.94180 0.92911 0.89166 0.88241 0.87904 0.83946 0.85908 0.83260 0.81983 0.81054 0.80864 0.80048 0.86122 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.77 9.11 71.98 0.66 -4.11 16 2 C 0.13 4.74 3.22 45.29 0.15 4.89 16 3 H 0.04 1.63 7.70 -2.38 -0.02 1.61 16 4 C 0.17 6.31 3.11 46.18 0.14 6.45 16 5 H 0.07 2.56 7.83 -2.39 -0.02 2.54 16 6 N -0.73 -36.11 5.25 -317.32 -1.67 -37.78 16 7 C -0.23 -12.49 9.98 84.03 0.84 -11.65 16 8 H 0.09 4.23 7.83 -2.91 -0.02 4.21 16 9 C -0.08 -4.51 5.50 84.86 0.47 -4.04 16 10 N -0.97 -59.98 13.06 21.65 0.28 -59.70 16 11 Si 0.97 45.45 29.55 68.60 2.03 47.47 16 12 H -0.29 -13.36 7.11 99.48 0.71 -12.66 16 13 H -0.30 -14.34 7.11 99.48 0.71 -13.64 16 14 H -0.26 -11.35 7.11 99.48 0.71 -10.64 16 15 C -0.15 -4.45 6.77 31.98 0.22 -4.23 16 16 C 0.10 2.17 6.68 86.85 0.58 2.75 16 17 N -0.61 -17.24 3.08 -787.42 -2.42 -19.66 16 18 C 0.52 15.03 7.64 87.66 0.67 15.70 16 19 O -0.58 -22.23 15.11 -3.03 -0.05 -22.28 16 20 C -0.09 -1.69 4.80 29.10 0.14 -1.55 16 21 C -0.05 -1.05 4.34 -20.10 -0.09 -1.14 16 22 C -0.11 -2.09 9.59 22.05 0.21 -1.88 16 23 C -0.09 -1.65 9.78 22.32 0.22 -1.43 16 24 C -0.12 -2.63 5.74 -21.28 -0.12 -2.75 16 25 C -0.06 -0.84 9.90 22.50 0.22 -0.62 16 26 C -0.18 -2.29 10.03 22.15 0.22 -2.06 16 27 C 0.12 2.17 11.15 85.07 0.95 3.12 16 28 N -0.52 -13.80 10.34 -188.63 -1.95 -15.75 16 29 C 0.10 2.68 6.60 40.29 0.27 2.94 16 30 C -0.11 -2.94 9.58 22.34 0.21 -2.73 16 31 H 0.07 2.09 8.14 -2.39 -0.02 2.07 16 32 H 0.05 1.79 6.93 -2.39 -0.02 1.78 16 33 H 0.05 1.97 8.14 -2.38 -0.02 1.95 16 34 H 0.37 20.41 7.52 -92.71 -0.70 19.71 16 35 H 0.25 15.00 8.31 -92.71 -0.77 14.23 16 36 H 0.05 1.82 8.14 -2.38 -0.02 1.80 16 37 H 0.09 2.45 8.14 -2.39 -0.02 2.43 16 38 H 0.10 1.52 8.14 -2.39 -0.02 1.50 16 39 H 0.10 1.54 7.47 -2.39 -0.02 1.52 16 40 H 0.14 1.55 8.08 -2.39 -0.02 1.53 16 41 H 0.12 1.84 7.77 -2.39 -0.02 1.82 16 42 H 0.15 2.01 8.06 -2.91 -0.02 1.98 16 43 H 0.16 1.62 8.06 -2.91 -0.02 1.59 16 44 H 0.17 1.15 8.06 -2.91 -0.02 1.12 16 45 H 0.17 0.84 8.06 -2.91 -0.02 0.82 16 46 H 0.18 2.06 8.06 -2.91 -0.02 2.04 16 47 H 0.12 3.31 8.06 -2.91 -0.02 3.28 16 Total: -1.00 -79.90 389.72 2.46 -77.44 By element: Atomic # 1 Polarization: 32.31 SS G_CDS: 0.28 Total: 32.59 kcal Atomic # 6 Polarization: -8.29 SS G_CDS: 5.95 Total: -2.34 kcal Atomic # 7 Polarization: -127.13 SS G_CDS: -5.76 Total: -132.89 kcal Atomic # 8 Polarization: -22.23 SS G_CDS: -0.05 Total: -22.28 kcal Atomic # 14 Polarization: 45.45 SS G_CDS: 2.03 Total: 47.47 kcal Total: -79.90 2.46 -77.44 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000986421320.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.894 kcal (2) G-P(sol) polarization free energy of solvation -79.898 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.997 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.457 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.441 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.454 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds