Wall clock time and date at job start Tue Mar 31 2020 22:32:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08999 * 109.87180 * 2 1 4 4 C 1.54321 * 109.88505 * 238.98373 * 2 1 3 5 5 H 1.08992 * 110.87201 * 99.95410 * 4 2 1 6 6 N 1.46498 * 110.72040 * 336.74658 * 4 2 1 7 7 C 1.36939 * 119.99581 * 95.70044 * 6 4 2 8 8 H 1.08001 * 120.00368 * 359.97438 * 7 6 4 9 9 C 1.38818 * 120.00093 * 180.02562 * 7 6 4 10 10 N 1.31622 * 119.99732 * 0.02562 * 9 7 6 11 11 Si 1.86800 * 120.00251 * 180.02562 * 9 7 6 12 12 H 1.48494 * 109.47169 * 89.99615 * 11 9 7 13 13 H 1.48500 * 109.47056 * 209.99933 * 11 9 7 14 14 H 1.48505 * 109.46948 * 329.99650 * 11 9 7 15 15 C 1.55160 * 102.94023 * 218.39144 * 4 2 1 16 16 C 1.54913 * 101.58426 * 35.50019 * 15 4 2 17 17 N 1.47286 * 109.87243 * 121.13282 * 2 1 3 18 18 C 1.34777 * 125.79527 * 298.36344 * 17 2 1 19 19 O 1.21276 * 120.00087 * 0.02562 * 18 17 2 20 20 C 1.50699 * 119.99948 * 180.02562 * 18 17 2 21 21 C 1.50704 * 109.47102 * 179.97438 * 20 18 17 22 22 C 1.39363 * 119.46202 * 89.99889 * 21 20 18 23 23 C 1.36146 * 120.86233 * 179.97438 * 22 21 20 24 24 C 1.40418 * 119.61774 * 0.02562 * 23 22 21 25 25 C 1.40772 * 121.37971 * 180.02562 * 24 23 22 26 26 C 1.36574 * 118.15286 * 179.97438 * 25 24 23 27 27 C 1.39335 * 119.93573 * 0.03483 * 26 25 24 28 28 N 1.31083 * 121.74726 * 359.97438 * 27 26 25 29 29 C 1.33679 * 121.32299 * 0.02562 * 28 27 26 30 30 C 1.36071 * 119.46945 * 269.72967 * 21 20 18 31 31 H 1.09002 * 109.46711 * 186.31179 * 1 2 3 32 32 H 1.08994 * 109.47503 * 306.31264 * 1 2 3 33 33 H 1.09002 * 109.46969 * 66.31958 * 1 2 3 34 34 H 0.96999 * 120.00816 * 275.70466 * 6 4 2 35 35 H 0.97003 * 120.00060 * 180.02562 * 10 9 7 36 36 H 1.09006 * 111.00250 * 277.42699 * 15 4 2 37 37 H 1.08999 * 111.03910 * 153.59254 * 15 4 2 38 38 H 1.08991 * 110.36608 * 81.83294 * 16 15 4 39 39 H 1.09003 * 110.36504 * 204.04576 * 16 15 4 40 40 H 1.09000 * 109.47345 * 299.99801 * 20 18 17 41 41 H 1.09001 * 109.47681 * 59.99785 * 20 18 17 42 42 H 1.07996 * 119.57088 * 0.02562 * 22 21 20 43 43 H 1.08001 * 120.18712 * 179.97438 * 23 22 21 44 44 H 1.08004 * 120.92067 * 359.95902 * 25 24 23 45 45 H 1.07998 * 120.03454 * 179.97438 * 26 25 24 46 46 H 1.07995 * 119.12092 * 179.97438 * 27 26 25 47 47 H 1.08004 * 120.11997 * 359.97438 * 30 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9006 1.0251 0.0000 4 6 2.0549 -0.7478 -1.2437 5 1 2.3526 -0.0454 -2.0222 6 7 1.0474 -1.6832 -1.7497 7 6 0.2119 -1.3053 -2.7667 8 1 0.2955 -0.3176 -3.1956 9 6 -0.7432 -2.1914 -3.2459 10 7 -0.8461 -3.3946 -2.7222 11 14 -1.8825 -1.6763 -4.6337 12 1 -1.2637 -2.0258 -5.9376 13 1 -3.1810 -2.3835 -4.4965 14 1 -2.1084 -0.2099 -4.5702 15 6 3.2877 -1.5133 -0.6943 16 6 2.8145 -1.8804 0.7344 17 7 2.0307 -0.7162 1.1857 18 6 1.8103 -0.3673 2.4687 19 8 1.1467 0.6150 2.7246 20 6 2.3884 -1.1979 3.5853 21 6 1.9986 -0.5977 4.9116 22 6 0.8172 -1.0058 5.5280 23 6 0.4379 -0.4828 6.7263 24 6 1.2465 0.4810 7.3501 25 6 0.8903 1.0459 8.5893 26 6 1.7256 1.9774 9.1368 27 6 2.8923 2.3433 8.4687 28 7 3.2208 1.8154 7.3147 29 6 2.4473 0.8985 6.7246 30 6 2.8085 0.3299 5.4905 31 1 -0.3633 -1.0215 0.1130 32 1 -0.3634 0.6085 0.8280 33 1 -0.3633 0.4128 -0.9412 34 1 0.9720 -2.5701 -1.3643 35 1 -1.5132 -4.0140 -3.0573 36 1 4.1655 -0.8678 -0.6614 37 1 3.4860 -2.4092 -1.2825 38 1 2.1888 -2.7724 0.7092 39 1 3.6717 -2.0375 1.3892 40 1 2.0023 -2.2151 3.5190 41 1 3.4749 -1.2155 3.5002 42 1 0.1948 -1.7473 5.0492 43 1 -0.4801 -0.8067 7.1941 44 1 -0.0185 0.7510 9.0929 45 1 1.4817 2.4306 10.0862 46 1 3.5431 3.0815 8.9134 47 1 3.7231 0.6316 5.0015 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000986421321.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:32:55 Heat of formation + Delta-G solvation = 36.994981 kcal Electronic energy + Delta-G solvation = -28651.087581 eV Core-core repulsion = 24798.924033 eV Total energy + Delta-G solvation = -3852.163549 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.01765 -39.87186 -37.96707 -36.89347 -34.00604 -33.81837 -32.31108 -31.40618 -30.67636 -30.27600 -29.08976 -27.54733 -25.23196 -24.28119 -23.51267 -23.20622 -22.34368 -21.97660 -19.89194 -18.49902 -17.98648 -17.50637 -17.16062 -16.98892 -16.63707 -15.82922 -15.11169 -14.68109 -14.62711 -14.51899 -14.34007 -14.26296 -13.75052 -13.58803 -13.52708 -13.24660 -13.03958 -12.88210 -12.58140 -12.48087 -12.06161 -11.77239 -11.64671 -11.51231 -11.42925 -11.31305 -10.89356 -10.86616 -10.70997 -10.61319 -10.49636 -10.18868 -10.06503 -9.69800 -9.68221 -9.48051 -8.98526 -8.80491 -8.37559 -8.21859 -7.05965 -5.84310 -3.13317 0.24041 0.64441 1.84793 2.70975 2.93054 3.37795 3.40139 3.46141 3.46844 3.97178 4.07326 4.38726 4.48631 4.53061 4.62319 4.67754 4.79336 4.83938 4.93620 4.98330 5.12482 5.21291 5.30193 5.33925 5.40602 5.43235 5.56603 5.62349 5.69689 5.73062 5.77547 5.81033 5.87607 5.93304 6.09762 6.19995 6.23622 6.29487 6.33679 6.39888 6.45089 6.57311 6.65966 6.68915 6.84453 7.05393 7.33865 7.64195 7.73775 7.93603 8.33196 8.50567 9.45503 9.99342 10.34598 11.37764 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.022675 B = 0.002260 C = 0.002184 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1234.545071 B =12385.948974 C =12818.355535 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.109 3.891 3 H 0.059 0.941 4 C 0.170 3.830 5 H 0.074 0.926 6 N -0.708 5.708 7 C -0.239 4.239 8 H 0.071 0.929 9 C -0.010 4.010 10 N -0.930 5.930 11 Si 0.905 3.095 12 H -0.290 1.290 13 H -0.292 1.292 14 H -0.281 1.281 15 C -0.145 4.145 16 C 0.101 3.899 17 N -0.606 5.606 18 C 0.527 3.473 19 O -0.538 6.538 20 C -0.104 4.104 21 C -0.037 4.037 22 C -0.094 4.094 23 C -0.099 4.099 24 C -0.103 4.103 25 C -0.057 4.057 26 C -0.182 4.182 27 C 0.126 3.874 28 N -0.473 5.473 29 C 0.130 3.870 30 C -0.082 4.082 31 H 0.063 0.937 32 H 0.037 0.963 33 H 0.068 0.932 34 H 0.385 0.615 35 H 0.255 0.745 36 H 0.071 0.929 37 H 0.086 0.914 38 H 0.071 0.929 39 H 0.066 0.934 40 H 0.105 0.895 41 H 0.102 0.898 42 H 0.129 0.871 43 H 0.131 0.869 44 H 0.137 0.863 45 H 0.135 0.865 46 H 0.157 0.843 47 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.734 4.375 21.568 23.677 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.004 3.996 3 H 0.077 0.923 4 C 0.058 3.942 5 H 0.092 0.908 6 N -0.348 5.348 7 C -0.370 4.370 8 H 0.089 0.911 9 C -0.206 4.206 10 N -0.578 5.578 11 Si 0.736 3.264 12 H -0.217 1.217 13 H -0.218 1.218 14 H -0.207 1.207 15 C -0.185 4.185 16 C -0.022 4.022 17 N -0.340 5.340 18 C 0.314 3.686 19 O -0.415 6.415 20 C -0.144 4.144 21 C -0.040 4.040 22 C -0.112 4.112 23 C -0.118 4.118 24 C -0.105 4.105 25 C -0.083 4.083 26 C -0.202 4.202 27 C -0.047 4.047 28 N -0.181 5.181 29 C 0.009 3.991 30 C -0.100 4.100 31 H 0.082 0.918 32 H 0.056 0.944 33 H 0.087 0.913 34 H 0.219 0.781 35 H 0.065 0.935 36 H 0.089 0.911 37 H 0.105 0.895 38 H 0.089 0.911 39 H 0.085 0.915 40 H 0.123 0.877 41 H 0.121 0.879 42 H 0.146 0.854 43 H 0.148 0.852 44 H 0.155 0.845 45 H 0.153 0.847 46 H 0.174 0.826 47 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 9.009 5.172 21.086 23.506 hybrid contribution -1.560 -0.348 -0.172 1.607 sum 7.450 4.824 20.914 22.719 Atomic orbital electron populations 1.21750 0.93773 1.02471 1.00931 1.22766 0.96156 0.95328 0.85371 0.92340 1.21247 0.88475 0.92236 0.92284 0.90785 1.42318 1.37619 1.13956 1.40875 1.19193 1.10107 0.98367 1.09316 0.91062 1.24722 0.99741 0.96166 0.99967 1.69650 1.37500 1.06258 1.44409 0.86225 0.80377 0.77685 0.82112 1.21726 1.21826 1.20706 1.23147 0.98581 1.01791 0.94944 1.22306 0.94573 0.89231 0.96102 1.48701 1.51907 1.28341 1.05027 1.19936 0.80974 0.85429 0.82240 1.90706 1.39928 1.27827 1.83064 1.20763 1.02882 1.00323 0.90408 1.19088 0.94319 0.96029 0.94518 1.20837 0.95681 0.99792 0.94896 1.20910 0.99066 0.96098 0.95723 1.18845 0.96508 0.99033 0.96128 1.21471 0.98865 0.94420 0.93519 1.21849 0.96533 0.99808 1.01973 1.22928 0.94583 0.96766 0.90451 1.68016 1.31562 1.08524 1.10020 1.18792 0.91079 0.94226 0.95014 1.20567 1.00484 0.95626 0.93369 0.91816 0.94354 0.91337 0.78098 0.93476 0.91067 0.89509 0.91125 0.91531 0.87712 0.87931 0.85355 0.85158 0.84521 0.84697 0.82578 0.84892 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.73 8.03 37.16 0.30 -2.43 16 2 C 0.11 1.99 3.45 -66.81 -0.23 1.76 16 3 H 0.06 1.07 8.14 -51.93 -0.42 0.64 16 4 C 0.17 3.09 3.52 -66.10 -0.23 2.86 16 5 H 0.07 1.35 8.06 -51.93 -0.42 0.93 16 6 N -0.71 -16.04 3.91 -51.65 -0.20 -16.25 16 7 C -0.24 -6.14 8.41 -15.06 -0.13 -6.27 16 8 H 0.07 1.80 7.83 -52.49 -0.41 1.39 16 9 C -0.01 -0.26 5.50 -17.43 -0.10 -0.36 16 10 N -0.93 -26.72 13.06 55.49 0.72 -26.00 16 11 Si 0.90 21.73 29.55 -169.99 -5.02 16.71 16 12 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 13 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 14 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 15 C -0.15 -2.06 6.69 -24.58 -0.16 -2.22 16 16 C 0.10 1.34 6.62 -2.53 -0.02 1.33 16 17 N -0.61 -9.67 3.07 -162.82 -0.50 -10.17 16 18 C 0.53 8.48 7.64 -10.99 -0.08 8.40 16 19 O -0.54 -10.76 15.20 5.56 0.08 -10.67 16 20 C -0.10 -1.21 4.80 -29.03 -0.14 -1.35 16 21 C -0.04 -0.47 4.34 -104.98 -0.46 -0.93 16 22 C -0.09 -1.11 9.59 -39.92 -0.38 -1.49 16 23 C -0.10 -1.08 9.78 -39.51 -0.39 -1.47 16 24 C -0.10 -1.22 5.74 -106.80 -0.61 -1.83 16 25 C -0.06 -0.51 9.90 -39.23 -0.39 -0.90 16 26 C -0.18 -1.46 10.03 -39.77 -0.40 -1.86 16 27 C 0.13 1.20 11.15 -17.46 -0.19 1.01 16 28 N -0.47 -6.15 10.34 -10.97 -0.11 -6.26 16 29 C 0.13 1.75 6.60 -84.86 -0.56 1.19 16 30 C -0.08 -1.08 9.58 -39.47 -0.38 -1.46 16 31 H 0.06 1.47 7.64 -51.93 -0.40 1.07 16 32 H 0.04 0.80 7.10 -51.93 -0.37 0.43 16 33 H 0.07 1.50 7.12 -51.93 -0.37 1.13 16 34 H 0.38 9.34 7.84 -40.82 -0.32 9.02 16 35 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 36 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 37 H 0.09 1.25 8.14 -51.93 -0.42 0.82 16 38 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 39 H 0.07 0.67 7.47 -51.93 -0.39 0.29 16 40 H 0.10 1.03 8.08 -51.93 -0.42 0.61 16 41 H 0.10 0.95 7.77 -51.93 -0.40 0.55 16 42 H 0.13 1.33 8.06 -52.49 -0.42 0.91 16 43 H 0.13 1.05 8.06 -52.49 -0.42 0.63 16 44 H 0.14 0.83 8.06 -52.48 -0.42 0.41 16 45 H 0.14 0.65 8.06 -52.49 -0.42 0.22 16 46 H 0.16 0.98 8.06 -52.49 -0.42 0.56 16 47 H 0.13 1.65 8.06 -52.48 -0.42 1.23 16 LS Contribution 385.95 15.07 5.82 5.82 Total: -1.00 -33.04 385.95 -10.62 -43.66 By element: Atomic # 1 Polarization: 16.05 SS G_CDS: -6.86 Total: 9.19 kcal Atomic # 6 Polarization: -1.47 SS G_CDS: -4.55 Total: -6.02 kcal Atomic # 7 Polarization: -58.59 SS G_CDS: -0.09 Total: -58.68 kcal Atomic # 8 Polarization: -10.76 SS G_CDS: 0.08 Total: -10.67 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -5.02 Total: 16.71 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -33.04 -10.62 -43.66 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000986421321.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.656 kcal (2) G-P(sol) polarization free energy of solvation -33.039 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.617 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.622 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.662 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.995 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds