Wall clock time and date at job start Tue Mar 31 2020 22:32:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08999 * 109.87180 * 2 1 4 4 C 1.54321 * 109.88505 * 238.98373 * 2 1 3 5 5 H 1.08992 * 110.87201 * 99.95410 * 4 2 1 6 6 N 1.46498 * 110.72040 * 336.74658 * 4 2 1 7 7 C 1.36939 * 119.99581 * 95.70044 * 6 4 2 8 8 H 1.08001 * 120.00368 * 359.97438 * 7 6 4 9 9 C 1.38818 * 120.00093 * 180.02562 * 7 6 4 10 10 N 1.31622 * 119.99732 * 0.02562 * 9 7 6 11 11 Si 1.86800 * 120.00251 * 180.02562 * 9 7 6 12 12 H 1.48494 * 109.47169 * 89.99615 * 11 9 7 13 13 H 1.48500 * 109.47056 * 209.99933 * 11 9 7 14 14 H 1.48505 * 109.46948 * 329.99650 * 11 9 7 15 15 C 1.55160 * 102.94023 * 218.39144 * 4 2 1 16 16 C 1.54913 * 101.58426 * 35.50019 * 15 4 2 17 17 N 1.47286 * 109.87243 * 121.13282 * 2 1 3 18 18 C 1.34777 * 125.79527 * 298.36344 * 17 2 1 19 19 O 1.21276 * 120.00087 * 0.02562 * 18 17 2 20 20 C 1.50699 * 119.99948 * 180.02562 * 18 17 2 21 21 C 1.50704 * 109.47102 * 179.97438 * 20 18 17 22 22 C 1.39363 * 119.46202 * 89.99889 * 21 20 18 23 23 C 1.36146 * 120.86233 * 179.97438 * 22 21 20 24 24 C 1.40418 * 119.61774 * 0.02562 * 23 22 21 25 25 C 1.40772 * 121.37971 * 180.02562 * 24 23 22 26 26 C 1.36574 * 118.15286 * 179.97438 * 25 24 23 27 27 C 1.39335 * 119.93573 * 0.03483 * 26 25 24 28 28 N 1.31083 * 121.74726 * 359.97438 * 27 26 25 29 29 C 1.33679 * 121.32299 * 0.02562 * 28 27 26 30 30 C 1.36071 * 119.46945 * 269.72967 * 21 20 18 31 31 H 1.09002 * 109.46711 * 186.31179 * 1 2 3 32 32 H 1.08994 * 109.47503 * 306.31264 * 1 2 3 33 33 H 1.09002 * 109.46969 * 66.31958 * 1 2 3 34 34 H 0.96999 * 120.00816 * 275.70466 * 6 4 2 35 35 H 0.97003 * 120.00060 * 180.02562 * 10 9 7 36 36 H 1.09006 * 111.00250 * 277.42699 * 15 4 2 37 37 H 1.08999 * 111.03910 * 153.59254 * 15 4 2 38 38 H 1.08991 * 110.36608 * 81.83294 * 16 15 4 39 39 H 1.09003 * 110.36504 * 204.04576 * 16 15 4 40 40 H 1.09000 * 109.47345 * 299.99801 * 20 18 17 41 41 H 1.09001 * 109.47681 * 59.99785 * 20 18 17 42 42 H 1.07996 * 119.57088 * 0.02562 * 22 21 20 43 43 H 1.08001 * 120.18712 * 179.97438 * 23 22 21 44 44 H 1.08004 * 120.92067 * 359.95902 * 25 24 23 45 45 H 1.07998 * 120.03454 * 179.97438 * 26 25 24 46 46 H 1.07995 * 119.12092 * 179.97438 * 27 26 25 47 47 H 1.08004 * 120.11997 * 359.97438 * 30 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9006 1.0251 0.0000 4 6 2.0549 -0.7478 -1.2437 5 1 2.3526 -0.0454 -2.0222 6 7 1.0474 -1.6832 -1.7497 7 6 0.2119 -1.3053 -2.7667 8 1 0.2955 -0.3176 -3.1956 9 6 -0.7432 -2.1914 -3.2459 10 7 -0.8461 -3.3946 -2.7222 11 14 -1.8825 -1.6763 -4.6337 12 1 -1.2637 -2.0258 -5.9376 13 1 -3.1810 -2.3835 -4.4965 14 1 -2.1084 -0.2099 -4.5702 15 6 3.2877 -1.5133 -0.6943 16 6 2.8145 -1.8804 0.7344 17 7 2.0307 -0.7162 1.1857 18 6 1.8103 -0.3673 2.4687 19 8 1.1467 0.6150 2.7246 20 6 2.3884 -1.1979 3.5853 21 6 1.9986 -0.5977 4.9116 22 6 0.8172 -1.0058 5.5280 23 6 0.4379 -0.4828 6.7263 24 6 1.2465 0.4810 7.3501 25 6 0.8903 1.0459 8.5893 26 6 1.7256 1.9774 9.1368 27 6 2.8923 2.3433 8.4687 28 7 3.2208 1.8154 7.3147 29 6 2.4473 0.8985 6.7246 30 6 2.8085 0.3299 5.4905 31 1 -0.3633 -1.0215 0.1130 32 1 -0.3634 0.6085 0.8280 33 1 -0.3633 0.4128 -0.9412 34 1 0.9720 -2.5701 -1.3643 35 1 -1.5132 -4.0140 -3.0573 36 1 4.1655 -0.8678 -0.6614 37 1 3.4860 -2.4092 -1.2825 38 1 2.1888 -2.7724 0.7092 39 1 3.6717 -2.0375 1.3892 40 1 2.0023 -2.2151 3.5190 41 1 3.4749 -1.2155 3.5002 42 1 0.1948 -1.7473 5.0492 43 1 -0.4801 -0.8067 7.1941 44 1 -0.0185 0.7510 9.0929 45 1 1.4817 2.4306 10.0862 46 1 3.5431 3.0815 8.9134 47 1 3.7231 0.6316 5.0015 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000986421321.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:32:54 Heat of formation + Delta-G solvation = 17.350461 kcal Electronic energy + Delta-G solvation = -28651.939432 eV Core-core repulsion = 24798.924033 eV Total energy + Delta-G solvation = -3853.015399 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -41.84462 -41.12625 -39.14092 -37.96070 -35.73096 -34.63115 -33.52159 -32.80893 -32.07313 -31.09615 -30.63110 -28.58690 -26.80222 -25.30743 -25.03777 -24.28807 -23.29482 -22.96776 -21.25558 -19.81849 -19.34584 -18.78734 -18.00987 -17.93036 -17.78643 -17.18795 -16.45732 -16.09986 -15.58804 -15.45566 -15.39649 -15.25482 -15.17411 -15.01599 -14.95191 -14.42397 -14.04878 -13.90892 -13.85703 -13.73096 -13.19942 -13.04925 -12.93592 -12.78699 -12.61887 -12.44847 -12.37549 -12.30150 -12.27202 -12.19487 -11.83570 -11.67598 -11.49814 -11.47843 -10.95906 -10.78053 -10.45046 -9.64462 -9.56046 -9.20716 -8.98028 -7.91385 -5.17592 -0.53148 -0.15928 1.04138 1.47966 1.49269 1.56137 1.69237 1.84939 2.23660 2.57535 3.13398 3.30578 3.40016 3.61102 3.66838 3.73342 3.76519 3.90566 3.91255 4.03570 4.09335 4.13168 4.22358 4.30126 4.31940 4.43308 4.52695 4.55650 4.58186 4.61632 4.67165 4.79185 4.85893 4.86944 5.01923 5.02940 5.06618 5.14303 5.15037 5.27045 5.33170 5.39633 5.49892 5.51315 5.53203 5.59428 5.62229 5.90790 6.30420 6.68733 6.96758 7.24216 7.38665 8.11739 8.35897 9.31405 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.022675 B = 0.002260 C = 0.002184 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1234.545071 B =12385.948974 C =12818.355535 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C 0.114 3.886 3 H 0.060 0.940 4 C 0.162 3.838 5 H 0.075 0.925 6 N -0.715 5.715 7 C -0.225 4.225 8 H 0.074 0.926 9 C -0.070 4.070 10 N -0.964 5.964 11 Si 0.960 3.040 12 H -0.288 1.288 13 H -0.301 1.301 14 H -0.275 1.275 15 C -0.132 4.132 16 C 0.101 3.899 17 N -0.607 5.607 18 C 0.522 3.478 19 O -0.584 6.584 20 C -0.093 4.093 21 C -0.047 4.047 22 C -0.117 4.117 23 C -0.096 4.096 24 C -0.125 4.125 25 C -0.060 4.060 26 C -0.175 4.175 27 C 0.122 3.878 28 N -0.512 5.512 29 C 0.101 3.899 30 C -0.103 4.103 31 H 0.036 0.964 32 H 0.028 0.972 33 H 0.050 0.950 34 H 0.376 0.624 35 H 0.248 0.752 36 H 0.100 0.900 37 H 0.088 0.912 38 H 0.062 0.938 39 H 0.112 0.888 40 H 0.126 0.874 41 H 0.131 0.869 42 H 0.137 0.863 43 H 0.158 0.842 44 H 0.169 0.831 45 H 0.175 0.825 46 H 0.186 0.814 47 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.889 4.773 23.601 26.030 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.008 3.992 3 H 0.078 0.922 4 C 0.051 3.949 5 H 0.093 0.907 6 N -0.353 5.353 7 C -0.357 4.357 8 H 0.092 0.908 9 C -0.263 4.263 10 N -0.615 5.615 11 Si 0.790 3.210 12 H -0.215 1.215 13 H -0.228 1.228 14 H -0.200 1.200 15 C -0.170 4.170 16 C -0.021 4.021 17 N -0.340 5.340 18 C 0.312 3.688 19 O -0.464 6.464 20 C -0.132 4.132 21 C -0.049 4.049 22 C -0.135 4.135 23 C -0.114 4.114 24 C -0.127 4.127 25 C -0.086 4.086 26 C -0.194 4.194 27 C -0.051 4.051 28 N -0.221 5.221 29 C -0.019 4.019 30 C -0.121 4.121 31 H 0.055 0.945 32 H 0.047 0.953 33 H 0.069 0.931 34 H 0.209 0.791 35 H 0.057 0.943 36 H 0.118 0.882 37 H 0.106 0.894 38 H 0.080 0.920 39 H 0.130 0.870 40 H 0.144 0.856 41 H 0.149 0.851 42 H 0.155 0.845 43 H 0.176 0.824 44 H 0.186 0.814 45 H 0.192 0.808 46 H 0.203 0.797 47 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 10.215 5.587 23.122 25.888 hybrid contribution -1.882 -0.313 -0.645 2.014 sum 8.334 5.275 22.477 24.545 Atomic orbital electron populations 1.21537 0.96071 1.00164 0.99465 1.22485 0.94106 0.95851 0.86796 0.92214 1.21456 0.89141 0.92135 0.92162 0.90680 1.42398 1.38304 1.14253 1.40357 1.19490 1.09451 0.97934 1.08828 0.90830 1.25364 1.01773 0.96574 1.02572 1.69780 1.38430 1.07212 1.46103 0.85340 0.78333 0.77406 0.79908 1.21479 1.22836 1.19997 1.23080 0.97354 1.01716 0.94890 1.22482 0.95515 0.87623 0.96485 1.48752 1.51961 1.28784 1.04513 1.20732 0.80101 0.85128 0.82844 1.90683 1.41997 1.30018 1.83739 1.20775 1.04360 1.00108 0.87957 1.19224 0.94653 0.96162 0.94876 1.21066 0.95914 1.00744 0.95729 1.21268 0.99643 0.95215 0.95318 1.19166 0.96297 0.99703 0.97491 1.21906 1.00092 0.94085 0.92509 1.22280 0.95295 0.98894 1.02981 1.23602 0.95550 0.96400 0.89512 1.68017 1.32634 1.09648 1.11807 1.19058 0.92219 0.95047 0.95573 1.20679 1.00905 0.96482 0.94061 0.94468 0.95291 0.93072 0.79143 0.94286 0.88162 0.89354 0.91992 0.87043 0.85561 0.85085 0.84477 0.82450 0.81376 0.80805 0.79683 0.85237 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.89 8.03 71.98 0.58 -4.31 16 2 C 0.11 4.13 3.45 45.29 0.16 4.28 16 3 H 0.06 2.16 8.14 -2.39 -0.02 2.14 16 4 C 0.16 5.74 3.52 46.18 0.16 5.90 16 5 H 0.08 2.65 8.06 -2.39 -0.02 2.63 16 6 N -0.71 -32.50 3.91 -317.33 -1.24 -33.74 16 7 C -0.23 -11.66 8.41 84.03 0.71 -10.95 16 8 H 0.07 3.72 7.83 -2.91 -0.02 3.69 16 9 C -0.07 -3.88 5.50 84.86 0.47 -3.41 16 10 N -0.96 -56.61 13.06 21.65 0.28 -56.32 16 11 Si 0.96 45.35 29.55 68.60 2.03 47.38 16 12 H -0.29 -13.34 7.11 99.48 0.71 -12.64 16 13 H -0.30 -14.59 7.11 99.48 0.71 -13.88 16 14 H -0.27 -12.49 7.11 99.48 0.71 -11.79 16 15 C -0.13 -3.38 6.69 31.99 0.21 -3.17 16 16 C 0.10 2.42 6.62 86.86 0.57 2.99 16 17 N -0.61 -18.66 3.07 -787.43 -2.42 -21.08 16 18 C 0.52 16.47 7.64 87.66 0.67 17.14 16 19 O -0.58 -23.76 15.20 -3.02 -0.05 -23.80 16 20 C -0.09 -2.01 4.80 29.10 0.14 -1.87 16 21 C -0.05 -1.17 4.34 -20.10 -0.09 -1.26 16 22 C -0.12 -2.71 9.59 22.05 0.21 -2.50 16 23 C -0.10 -1.99 9.78 22.31 0.22 -1.78 16 24 C -0.12 -2.83 5.74 -21.28 -0.12 -2.95 16 25 C -0.06 -0.94 9.90 22.50 0.22 -0.72 16 26 C -0.18 -2.30 10.03 22.14 0.22 -2.07 16 27 C 0.12 2.12 11.15 85.07 0.95 3.07 16 28 N -0.51 -13.20 10.34 -188.63 -1.95 -15.15 16 29 C 0.10 2.75 6.60 40.29 0.27 3.02 16 30 C -0.10 -2.77 9.58 22.34 0.21 -2.55 16 31 H 0.04 1.76 7.64 -2.39 -0.02 1.74 16 32 H 0.03 1.25 7.10 -2.39 -0.02 1.24 16 33 H 0.05 2.31 7.12 -2.39 -0.02 2.29 16 34 H 0.38 18.44 7.84 -92.71 -0.73 17.72 16 35 H 0.25 14.35 8.31 -92.71 -0.77 13.58 16 36 H 0.10 2.05 8.14 -2.38 -0.02 2.03 16 37 H 0.09 2.31 8.14 -2.39 -0.02 2.29 16 38 H 0.06 1.64 8.14 -2.39 -0.02 1.62 16 39 H 0.11 1.75 7.47 -2.39 -0.02 1.73 16 40 H 0.13 2.19 8.08 -2.39 -0.02 2.17 16 41 H 0.13 2.06 7.77 -2.39 -0.02 2.05 16 42 H 0.14 2.78 8.06 -2.91 -0.02 2.76 16 43 H 0.16 2.21 8.06 -2.91 -0.02 2.19 16 44 H 0.17 1.43 8.06 -2.91 -0.02 1.41 16 45 H 0.17 0.86 8.06 -2.91 -0.02 0.84 16 46 H 0.19 1.87 8.06 -2.91 -0.02 1.85 16 47 H 0.13 3.34 8.06 -2.91 -0.02 3.32 16 Total: -1.00 -75.56 385.95 2.67 -72.89 By element: Atomic # 1 Polarization: 30.72 SS G_CDS: 0.25 Total: 30.98 kcal Atomic # 6 Polarization: -6.90 SS G_CDS: 5.76 Total: -1.14 kcal Atomic # 7 Polarization: -120.97 SS G_CDS: -5.33 Total: -126.30 kcal Atomic # 8 Polarization: -23.76 SS G_CDS: -0.05 Total: -23.80 kcal Atomic # 14 Polarization: 45.35 SS G_CDS: 2.03 Total: 47.38 kcal Total: -75.56 2.67 -72.89 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000986421321.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.237 kcal (2) G-P(sol) polarization free energy of solvation -75.556 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.680 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.670 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.886 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.350 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds