Wall clock time and date at job start Tue Mar 31 2020 22:32:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09007 * 109.86785 * 2 1 4 4 C 1.54363 * 110.03074 * 121.06663 * 2 1 3 5 5 H 1.09003 * 110.75670 * 260.01736 * 4 2 1 6 6 N 1.46504 * 110.70841 * 23.30798 * 4 2 1 7 7 C 1.36942 * 119.99794 * 217.05393 * 6 4 2 8 8 H 1.07995 * 120.00281 * 359.97438 * 7 6 4 9 9 C 1.38808 * 119.99700 * 179.97438 * 7 6 4 10 10 N 1.31626 * 120.00236 * 0.02562 * 9 7 6 11 11 Si 1.86796 * 120.00015 * 179.97438 * 9 7 6 12 12 H 1.48500 * 109.47170 * 60.00010 * 11 9 7 13 13 H 1.48501 * 109.47304 * 180.02562 * 11 9 7 14 14 H 1.48505 * 109.47110 * 300.00272 * 11 9 7 15 15 C 1.55154 * 102.91863 * 141.64980 * 4 2 1 16 16 C 1.54906 * 101.61817 * 324.54416 * 15 4 2 17 17 N 1.47018 * 109.87891 * 238.98776 * 2 1 3 18 18 C 1.34770 * 125.65145 * 61.45126 * 17 2 1 19 19 O 1.21583 * 120.00425 * 176.70226 * 18 17 2 20 20 C 1.47647 * 120.00193 * 356.69835 * 18 17 2 21 21 C 1.39718 * 120.07579 * 11.80779 * 20 18 17 22 22 C 1.37704 * 119.91967 * 179.69749 * 21 20 18 23 23 C 1.39066 * 120.07973 * 0.57793 * 22 21 20 24 24 N 1.39801 * 119.92097 * 179.74251 * 23 22 21 25 25 C 1.36638 * 125.67619 * 179.66634 * 24 23 22 26 26 C 1.34813 * 108.19448 * 179.86673 * 25 24 23 27 27 C 1.40986 * 107.48067 * 0.39201 * 26 25 24 28 28 C 1.34805 * 107.48261 * 359.75621 * 27 26 25 29 29 C 1.39057 * 120.15624 * 359.71746 * 23 22 21 30 30 C 1.37712 * 120.07813 * 359.97438 * 29 23 22 31 31 H 1.09008 * 109.46802 * 205.54856 * 1 2 3 32 32 H 1.09002 * 109.47510 * 325.54082 * 1 2 3 33 33 H 1.09003 * 109.47458 * 85.54641 * 1 2 3 34 34 H 0.96998 * 119.99776 * 37.04372 * 6 4 2 35 35 H 0.96997 * 120.00111 * 180.02562 * 10 9 7 36 36 H 1.09000 * 111.00675 * 206.44842 * 15 4 2 37 37 H 1.09003 * 111.00549 * 82.63959 * 15 4 2 38 38 H 1.09000 * 110.36887 * 155.82645 * 16 15 4 39 39 H 1.09000 * 110.36744 * 278.04332 * 16 15 4 40 40 H 1.08006 * 120.04062 * 359.97438 * 21 20 18 41 41 H 1.08004 * 119.96536 * 180.29191 * 22 21 20 42 42 H 1.08005 * 125.90138 * 0.02562 * 25 24 23 43 43 H 1.07999 * 126.25693 * 180.14981 * 26 25 24 44 44 H 1.08005 * 126.25343 * 179.75366 * 27 26 25 45 45 H 1.08005 * 125.90001 * 179.97438 * 28 27 26 46 46 H 1.07996 * 119.95892 * 180.02562 * 29 23 22 47 47 H 1.08003 * 120.03777 * 180.02562 * 30 29 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9005 1.0252 0.0000 4 6 2.0587 -0.7484 1.2422 5 1 2.3571 -0.0446 2.0193 6 7 1.0538 -1.6864 1.7486 7 6 0.9105 -1.8741 3.0975 8 1 1.5386 -1.3310 3.7880 9 6 -0.0421 -2.7625 3.5773 10 7 -0.8072 -3.4249 2.7357 11 14 -0.2371 -3.0191 5.4172 12 1 -0.5924 -1.7294 6.0619 13 1 -1.3134 -4.0112 5.6673 14 1 1.0400 -3.5211 5.9851 15 6 3.2918 -1.5107 0.6892 16 6 2.8176 -1.8762 -0.7394 17 7 2.0299 -0.7123 -1.1849 18 6 1.8049 -0.3602 -2.4662 19 8 2.3191 -0.9910 -3.3695 20 6 0.9336 0.7917 -2.7731 21 6 0.5419 1.6643 -1.7547 22 6 -0.2657 2.7411 -2.0456 23 6 -0.7010 2.9537 -3.3492 24 7 -1.5251 4.0449 -3.6398 25 6 -2.0140 4.3678 -4.8742 26 6 -2.7675 5.4789 -4.7512 27 6 -2.7373 5.8630 -3.3949 28 6 -1.9710 4.9695 -2.7380 29 6 -0.3181 2.0838 -4.3642 30 6 0.4945 1.0085 -4.0817 31 1 -0.3633 -0.9273 0.4432 32 1 -0.3634 0.8473 0.5815 33 1 -0.3634 0.0798 -1.0246 34 1 0.4898 -2.1745 1.1284 35 1 -1.4731 -4.0454 3.0709 36 1 3.4922 -2.4073 1.2757 37 1 4.1686 -0.8638 0.6564 38 1 3.6741 -2.0284 -1.3962 39 1 2.1953 -2.7708 -0.7153 40 1 0.8756 1.4970 -0.7412 41 1 -0.5651 3.4187 -1.2597 42 1 -1.8308 3.8250 -5.7898 43 1 -3.2943 5.9848 -5.5467 44 1 -3.2368 6.7170 -2.9617 45 1 -1.7477 4.9824 -1.6813 46 1 -0.6577 2.2522 -5.3755 47 1 0.7918 0.3335 -4.8706 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000986498421.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:32:03 Heat of formation + Delta-G solvation = 113.979460 kcal Electronic energy + Delta-G solvation = -29212.752495 eV Core-core repulsion = 25363.927244 eV Total energy + Delta-G solvation = -3848.825251 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.89026 -40.72454 -38.52635 -37.56761 -34.23506 -33.65573 -32.26238 -31.52736 -30.70633 -29.27837 -28.92860 -28.67545 -25.56666 -24.15304 -23.76039 -23.13881 -22.18877 -20.46652 -20.20947 -19.91998 -19.41511 -18.57320 -17.71780 -17.03417 -16.17496 -15.52575 -15.31529 -15.22011 -14.97583 -14.74469 -14.24175 -14.15577 -14.02499 -13.85137 -13.49552 -13.25030 -13.14487 -13.02508 -12.57040 -12.53427 -12.32917 -12.25935 -12.24403 -11.70711 -11.29420 -11.15872 -11.09914 -10.91399 -10.77709 -10.69186 -10.44647 -10.19975 -9.93951 -9.79500 -9.69280 -9.13752 -9.04729 -8.51029 -8.45757 -8.15051 -7.15040 -5.91794 -3.22619 0.42205 1.11983 2.05967 2.58501 2.75391 2.95423 3.15185 3.35094 3.40339 3.41598 3.75041 4.38517 4.45844 4.47862 4.52359 4.76314 4.85931 4.92876 4.96919 5.02023 5.14300 5.23203 5.27754 5.33837 5.43129 5.49355 5.53353 5.59017 5.70092 5.71697 5.79788 5.89734 5.96410 6.00328 6.02644 6.08356 6.09221 6.17355 6.24649 6.36107 6.45267 6.49695 6.61648 6.65300 6.69047 6.94078 6.94551 7.18161 7.56381 7.72844 8.25139 8.29956 9.37074 9.89242 10.23913 11.29765 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.012931 B = 0.002899 C = 0.002496 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2164.756010 B = 9655.641199 C =11216.955321 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.100 3.900 3 H 0.080 0.920 4 C 0.173 3.827 5 H 0.080 0.920 6 N -0.708 5.708 7 C -0.250 4.250 8 H 0.073 0.927 9 C -0.007 4.007 10 N -0.929 5.929 11 Si 0.909 3.091 12 H -0.285 1.285 13 H -0.291 1.291 14 H -0.285 1.285 15 C -0.160 4.160 16 C 0.112 3.888 17 N -0.599 5.599 18 C 0.573 3.427 19 O -0.549 6.549 20 C -0.148 4.148 21 C -0.075 4.075 22 C -0.159 4.159 23 C 0.163 3.837 24 N -0.397 5.397 25 C -0.015 4.015 26 C -0.191 4.191 27 C -0.192 4.192 28 C -0.012 4.012 29 C -0.159 4.159 30 C -0.030 4.030 31 H 0.098 0.902 32 H 0.065 0.935 33 H 0.058 0.942 34 H 0.388 0.612 35 H 0.258 0.742 36 H 0.089 0.911 37 H 0.063 0.937 38 H 0.070 0.930 39 H 0.071 0.929 40 H 0.179 0.821 41 H 0.135 0.865 42 H 0.165 0.835 43 H 0.140 0.860 44 H 0.141 0.859 45 H 0.167 0.833 46 H 0.133 0.867 47 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.887 15.468 -12.048 19.626 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C -0.004 4.004 3 H 0.097 0.903 4 C 0.060 3.940 5 H 0.098 0.902 6 N -0.349 5.349 7 C -0.381 4.381 8 H 0.091 0.909 9 C -0.204 4.204 10 N -0.576 5.576 11 Si 0.739 3.261 12 H -0.212 1.212 13 H -0.217 1.217 14 H -0.212 1.212 15 C -0.201 4.201 16 C -0.010 4.010 17 N -0.332 5.332 18 C 0.363 3.637 19 O -0.429 6.429 20 C -0.151 4.151 21 C -0.093 4.093 22 C -0.178 4.178 23 C 0.070 3.930 24 N -0.069 5.069 25 C -0.142 4.142 26 C -0.215 4.215 27 C -0.216 4.216 28 C -0.138 4.138 29 C -0.179 4.179 30 C -0.050 4.050 31 H 0.117 0.883 32 H 0.084 0.916 33 H 0.076 0.924 34 H 0.225 0.775 35 H 0.068 0.932 36 H 0.107 0.893 37 H 0.082 0.918 38 H 0.088 0.912 39 H 0.089 0.911 40 H 0.196 0.804 41 H 0.153 0.847 42 H 0.182 0.818 43 H 0.158 0.842 44 H 0.159 0.841 45 H 0.184 0.816 46 H 0.151 0.849 47 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 1.269 14.887 -12.322 19.366 hybrid contribution -0.506 -0.302 0.746 0.951 sum 0.763 14.585 -11.576 18.636 Atomic orbital electron populations 1.22766 0.93898 1.05790 1.01472 1.22611 0.95499 0.95631 0.86700 0.90252 1.21202 0.88987 0.91925 0.91890 0.90204 1.42554 1.39628 1.47766 1.04934 1.19206 1.15583 1.20343 0.82987 0.90915 1.24762 0.98579 0.99252 0.97763 1.69643 1.24463 1.30347 1.33124 0.86261 0.77318 0.77514 0.84992 1.21154 1.21702 1.21180 1.23553 0.99098 1.02421 0.95023 1.22215 0.94929 0.88285 0.95585 1.48476 1.51440 1.28650 1.04591 1.17751 0.80853 0.83702 0.81430 1.90751 1.51775 1.55372 1.45016 1.19941 1.02695 0.97946 0.94521 1.22962 0.93325 0.91000 1.02010 1.20783 1.02265 1.00371 0.94389 1.18134 0.92486 0.87550 0.94849 1.41673 1.36934 1.19832 1.08430 1.21944 1.03137 1.00691 0.88394 1.21012 1.04629 0.98590 0.97285 1.21019 1.04550 1.01759 0.94246 1.21982 1.03390 0.92466 0.96003 1.20684 1.02472 0.96137 0.98616 1.21075 0.92843 0.95206 0.95835 0.88341 0.91637 0.92360 0.77496 0.93209 0.89291 0.91824 0.91186 0.91086 0.80448 0.84749 0.81772 0.84191 0.84134 0.81605 0.84878 0.84019 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.83 7.53 37.16 0.28 -2.55 16 2 C 0.10 1.47 2.69 -66.93 -0.18 1.29 16 3 H 0.08 0.98 6.22 -51.93 -0.32 0.66 16 4 C 0.17 2.93 3.55 -66.07 -0.23 2.69 16 5 H 0.08 1.30 7.98 -51.93 -0.41 0.88 16 6 N -0.71 -15.45 4.00 -51.63 -0.21 -15.65 16 7 C -0.25 -6.23 9.93 -15.06 -0.15 -6.38 16 8 H 0.07 1.74 7.78 -52.49 -0.41 1.33 16 9 C -0.01 -0.18 5.50 -17.43 -0.10 -0.27 16 10 N -0.93 -26.24 13.06 55.49 0.72 -25.51 16 11 Si 0.91 21.02 29.55 -169.99 -5.02 15.99 16 12 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 13 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 14 H -0.29 -6.53 7.11 56.52 0.40 -6.13 16 15 C -0.16 -2.47 6.77 -24.59 -0.17 -2.64 16 16 C 0.11 1.81 6.90 -2.53 -0.02 1.79 16 17 N -0.60 -9.52 3.07 -164.72 -0.51 -10.03 16 18 C 0.57 9.52 7.56 -12.42 -0.09 9.42 16 19 O -0.55 -10.60 16.64 5.29 0.09 -10.51 16 20 C -0.15 -2.06 5.11 -104.95 -0.54 -2.60 16 21 C -0.08 -0.92 6.39 -39.22 -0.25 -1.17 16 22 C -0.16 -1.76 9.43 -39.47 -0.37 -2.13 16 23 C 0.16 1.86 6.62 -83.61 -0.55 1.31 16 24 N -0.40 -4.34 2.97 -60.89 -0.18 -4.52 16 25 C -0.02 -0.15 10.73 -16.62 -0.18 -0.33 16 26 C -0.19 -1.82 10.86 -39.76 -0.43 -2.25 16 27 C -0.19 -1.85 10.86 -39.76 -0.43 -2.28 16 28 C -0.01 -0.12 10.73 -16.63 -0.18 -0.30 16 29 C -0.16 -1.74 9.43 -39.47 -0.37 -2.12 16 30 C -0.03 -0.38 9.58 -39.22 -0.38 -0.75 16 31 H 0.10 1.93 5.27 -51.92 -0.27 1.66 16 32 H 0.06 0.92 7.93 -51.93 -0.41 0.51 16 33 H 0.06 0.88 4.79 -51.93 -0.25 0.63 16 34 H 0.39 9.28 6.23 -40.82 -0.25 9.03 16 35 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 36 H 0.09 1.49 8.14 -51.93 -0.42 1.07 16 37 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 38 H 0.07 1.09 8.01 -51.93 -0.42 0.68 16 39 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 40 H 0.18 2.09 2.17 -53.24 -0.12 1.98 16 41 H 0.13 1.22 6.68 -52.48 -0.35 0.87 16 42 H 0.16 1.21 6.99 -52.48 -0.37 0.85 16 43 H 0.14 1.03 8.06 -52.49 -0.42 0.61 16 44 H 0.14 1.07 8.06 -52.48 -0.42 0.65 16 45 H 0.17 1.31 6.99 -52.48 -0.37 0.94 16 46 H 0.13 1.14 6.68 -52.49 -0.35 0.79 16 47 H 0.14 1.71 7.69 -52.48 -0.40 1.30 16 LS Contribution 371.01 15.07 5.59 5.59 Total: -1.00 -30.29 371.01 -9.80 -40.09 By element: Atomic # 1 Polarization: 19.76 SS G_CDS: -5.95 Total: 13.80 kcal Atomic # 6 Polarization: -4.91 SS G_CDS: -4.34 Total: -9.25 kcal Atomic # 7 Polarization: -55.55 SS G_CDS: -0.17 Total: -55.72 kcal Atomic # 8 Polarization: -10.60 SS G_CDS: 0.09 Total: -10.51 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -5.02 Total: 15.99 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -30.29 -9.80 -40.09 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000986498421.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 154.072 kcal (2) G-P(sol) polarization free energy of solvation -30.290 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 123.782 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.802 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.093 kcal (6) G-S(sol) free energy of system = (1) + (5) 113.979 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds