Wall clock time and date at job start Tue Mar 31 2020 22:32:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09007 * 109.86785 * 2 1 4 4 C 1.54363 * 110.03074 * 121.06663 * 2 1 3 5 5 H 1.09003 * 110.75670 * 260.01736 * 4 2 1 6 6 N 1.46504 * 110.70841 * 23.30798 * 4 2 1 7 7 C 1.36942 * 119.99794 * 217.05393 * 6 4 2 8 8 H 1.07995 * 120.00281 * 359.97438 * 7 6 4 9 9 C 1.38808 * 119.99700 * 179.97438 * 7 6 4 10 10 N 1.31626 * 120.00236 * 0.02562 * 9 7 6 11 11 Si 1.86796 * 120.00015 * 179.97438 * 9 7 6 12 12 H 1.48500 * 109.47170 * 60.00010 * 11 9 7 13 13 H 1.48501 * 109.47304 * 180.02562 * 11 9 7 14 14 H 1.48505 * 109.47110 * 300.00272 * 11 9 7 15 15 C 1.55154 * 102.91863 * 141.64980 * 4 2 1 16 16 C 1.54906 * 101.61817 * 324.54416 * 15 4 2 17 17 N 1.47018 * 109.87891 * 238.98776 * 2 1 3 18 18 C 1.34770 * 125.65145 * 61.45126 * 17 2 1 19 19 O 1.21583 * 120.00425 * 176.70226 * 18 17 2 20 20 C 1.47647 * 120.00193 * 356.69835 * 18 17 2 21 21 C 1.39718 * 120.07579 * 11.80779 * 20 18 17 22 22 C 1.37704 * 119.91967 * 179.69749 * 21 20 18 23 23 C 1.39066 * 120.07973 * 0.57793 * 22 21 20 24 24 N 1.39801 * 119.92097 * 179.74251 * 23 22 21 25 25 C 1.36638 * 125.67619 * 179.66634 * 24 23 22 26 26 C 1.34813 * 108.19448 * 179.86673 * 25 24 23 27 27 C 1.40986 * 107.48067 * 0.39201 * 26 25 24 28 28 C 1.34805 * 107.48261 * 359.75621 * 27 26 25 29 29 C 1.39057 * 120.15624 * 359.71746 * 23 22 21 30 30 C 1.37712 * 120.07813 * 359.97438 * 29 23 22 31 31 H 1.09008 * 109.46802 * 205.54856 * 1 2 3 32 32 H 1.09002 * 109.47510 * 325.54082 * 1 2 3 33 33 H 1.09003 * 109.47458 * 85.54641 * 1 2 3 34 34 H 0.96998 * 119.99776 * 37.04372 * 6 4 2 35 35 H 0.96997 * 120.00111 * 180.02562 * 10 9 7 36 36 H 1.09000 * 111.00675 * 206.44842 * 15 4 2 37 37 H 1.09003 * 111.00549 * 82.63959 * 15 4 2 38 38 H 1.09000 * 110.36887 * 155.82645 * 16 15 4 39 39 H 1.09000 * 110.36744 * 278.04332 * 16 15 4 40 40 H 1.08006 * 120.04062 * 359.97438 * 21 20 18 41 41 H 1.08004 * 119.96536 * 180.29191 * 22 21 20 42 42 H 1.08005 * 125.90138 * 0.02562 * 25 24 23 43 43 H 1.07999 * 126.25693 * 180.14981 * 26 25 24 44 44 H 1.08005 * 126.25343 * 179.75366 * 27 26 25 45 45 H 1.08005 * 125.90001 * 179.97438 * 28 27 26 46 46 H 1.07996 * 119.95892 * 180.02562 * 29 23 22 47 47 H 1.08003 * 120.03777 * 180.02562 * 30 29 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9005 1.0252 0.0000 4 6 2.0587 -0.7484 1.2422 5 1 2.3571 -0.0446 2.0193 6 7 1.0538 -1.6864 1.7486 7 6 0.9105 -1.8741 3.0975 8 1 1.5386 -1.3310 3.7880 9 6 -0.0421 -2.7625 3.5773 10 7 -0.8072 -3.4249 2.7357 11 14 -0.2371 -3.0191 5.4172 12 1 -0.5924 -1.7294 6.0619 13 1 -1.3134 -4.0112 5.6673 14 1 1.0400 -3.5211 5.9851 15 6 3.2918 -1.5107 0.6892 16 6 2.8176 -1.8762 -0.7394 17 7 2.0299 -0.7123 -1.1849 18 6 1.8049 -0.3602 -2.4662 19 8 2.3191 -0.9910 -3.3695 20 6 0.9336 0.7917 -2.7731 21 6 0.5419 1.6643 -1.7547 22 6 -0.2657 2.7411 -2.0456 23 6 -0.7010 2.9537 -3.3492 24 7 -1.5251 4.0449 -3.6398 25 6 -2.0140 4.3678 -4.8742 26 6 -2.7675 5.4789 -4.7512 27 6 -2.7373 5.8630 -3.3949 28 6 -1.9710 4.9695 -2.7380 29 6 -0.3181 2.0838 -4.3642 30 6 0.4945 1.0085 -4.0817 31 1 -0.3633 -0.9273 0.4432 32 1 -0.3634 0.8473 0.5815 33 1 -0.3634 0.0798 -1.0246 34 1 0.4898 -2.1745 1.1284 35 1 -1.4731 -4.0454 3.0709 36 1 3.4922 -2.4073 1.2757 37 1 4.1686 -0.8638 0.6564 38 1 3.6741 -2.0284 -1.3962 39 1 2.1953 -2.7708 -0.7153 40 1 0.8756 1.4970 -0.7412 41 1 -0.5651 3.4187 -1.2597 42 1 -1.8308 3.8250 -5.7898 43 1 -3.2943 5.9848 -5.5467 44 1 -3.2368 6.7170 -2.9617 45 1 -1.7477 4.9824 -1.6813 46 1 -0.6577 2.2522 -5.3755 47 1 0.7918 0.3335 -4.8706 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000986498421.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:32:02 Heat of formation + Delta-G solvation = 98.852590 kcal Electronic energy + Delta-G solvation = -29213.408445 eV Core-core repulsion = 25363.927244 eV Total energy + Delta-G solvation = -3849.481201 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -42.67656 -41.87684 -39.57009 -38.87832 -35.84164 -34.70905 -33.30085 -33.15193 -31.71142 -30.65117 -29.81099 -29.68047 -26.95304 -25.53847 -25.18779 -24.06954 -23.27571 -21.49331 -21.17368 -20.90313 -20.52582 -19.53869 -19.26679 -18.31202 -17.50013 -16.72979 -16.49299 -16.38301 -15.98956 -15.92100 -15.54991 -15.41217 -15.03451 -14.88798 -14.68136 -14.61721 -14.33558 -14.01116 -13.84244 -13.52909 -13.37143 -13.22035 -13.04209 -12.98982 -12.93693 -12.70647 -12.42199 -12.32796 -12.26025 -12.06733 -11.93981 -11.68775 -11.44690 -11.05814 -10.88645 -10.81668 -10.05362 -9.74120 -9.22290 -9.02715 -8.97616 -7.90461 -5.18476 -0.51587 0.23074 1.19670 1.52530 1.53468 1.59277 1.80512 1.84524 1.97371 2.05505 2.59305 2.75898 3.33568 3.40776 3.50567 3.67217 3.77807 3.86679 3.88564 4.02390 4.07741 4.14775 4.23306 4.26856 4.28884 4.35478 4.45802 4.57381 4.60534 4.68226 4.75034 4.80659 4.86592 4.93059 4.99263 5.01352 5.08181 5.16456 5.19994 5.31279 5.32477 5.34872 5.38838 5.56069 5.58983 5.60944 5.95801 6.21291 6.29921 6.42635 6.47073 7.02382 7.37840 8.10371 8.33068 9.32220 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.012931 B = 0.002899 C = 0.002496 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2164.756010 B = 9655.641199 C =11216.955321 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.109 3.891 3 H 0.118 0.882 4 C 0.163 3.837 5 H 0.097 0.903 6 N -0.718 5.718 7 C -0.234 4.234 8 H 0.085 0.915 9 C -0.072 4.072 10 N -0.969 5.969 11 Si 0.967 3.033 12 H -0.276 1.276 13 H -0.305 1.305 14 H -0.281 1.281 15 C -0.146 4.146 16 C 0.111 3.889 17 N -0.600 5.600 18 C 0.568 3.432 19 O -0.586 6.586 20 C -0.169 4.169 21 C -0.071 4.071 22 C -0.157 4.157 23 C 0.163 3.837 24 N -0.407 5.407 25 C -0.030 4.030 26 C -0.200 4.200 27 C -0.201 4.201 28 C -0.028 4.028 29 C -0.156 4.156 30 C -0.036 4.036 31 H 0.056 0.944 32 H 0.084 0.916 33 H 0.061 0.939 34 H 0.375 0.625 35 H 0.248 0.752 36 H 0.073 0.927 37 H 0.095 0.905 38 H 0.075 0.925 39 H 0.044 0.956 40 H 0.183 0.817 41 H 0.158 0.842 42 H 0.184 0.816 43 H 0.158 0.842 44 H 0.157 0.843 45 H 0.185 0.815 46 H 0.156 0.844 47 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.240 18.472 -11.926 22.022 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.005 3.995 3 H 0.135 0.865 4 C 0.053 3.947 5 H 0.115 0.885 6 N -0.358 5.358 7 C -0.365 4.365 8 H 0.103 0.897 9 C -0.264 4.264 10 N -0.620 5.620 11 Si 0.797 3.203 12 H -0.202 1.202 13 H -0.232 1.232 14 H -0.207 1.207 15 C -0.186 4.186 16 C -0.011 4.011 17 N -0.331 5.331 18 C 0.360 3.640 19 O -0.468 6.468 20 C -0.172 4.172 21 C -0.089 4.089 22 C -0.177 4.177 23 C 0.069 3.931 24 N -0.079 5.079 25 C -0.156 4.156 26 C -0.223 4.223 27 C -0.224 4.224 28 C -0.153 4.153 29 C -0.175 4.175 30 C -0.056 4.056 31 H 0.075 0.925 32 H 0.102 0.898 33 H 0.080 0.920 34 H 0.210 0.790 35 H 0.057 0.943 36 H 0.092 0.908 37 H 0.113 0.887 38 H 0.093 0.907 39 H 0.063 0.937 40 H 0.199 0.801 41 H 0.175 0.825 42 H 0.201 0.799 43 H 0.175 0.825 44 H 0.175 0.825 45 H 0.202 0.798 46 H 0.174 0.826 47 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 1.659 17.956 -12.189 21.765 hybrid contribution -0.618 -1.095 0.593 1.390 sum 1.041 16.861 -11.596 20.490 Atomic orbital electron populations 1.22660 0.94488 1.04275 1.01598 1.22621 0.94913 0.96866 0.85075 0.86450 1.21497 0.88377 0.91594 0.93263 0.88509 1.42699 1.40628 1.48616 1.03824 1.19638 1.13933 1.18440 0.84535 0.89687 1.25461 0.99496 1.00350 1.01139 1.69809 1.25780 1.31895 1.34520 0.85312 0.76723 0.77189 0.81090 1.20207 1.23237 1.20689 1.23410 0.99433 1.02084 0.93699 1.22140 0.94710 0.87826 0.96423 1.48534 1.51245 1.28441 1.04923 1.18225 0.80634 0.84092 0.81029 1.90720 1.53321 1.56852 1.45931 1.19835 1.03754 0.97902 0.95748 1.22886 0.93482 0.90999 1.01537 1.21012 1.01492 1.00159 0.95018 1.18305 0.92069 0.87598 0.95082 1.41799 1.37185 1.19880 1.09034 1.22412 1.03153 1.01149 0.88843 1.21373 1.04481 0.98588 0.97881 1.21377 1.04382 1.02195 0.94493 1.22427 1.03545 0.92416 0.96957 1.20877 1.01610 0.95248 0.99807 1.21130 0.93258 0.95799 0.95364 0.92492 0.89759 0.92012 0.79044 0.94332 0.90822 0.88679 0.90699 0.93710 0.80095 0.82472 0.79886 0.82465 0.82510 0.79828 0.82625 0.84280 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.20 7.53 71.98 0.54 -4.66 16 2 C 0.11 3.01 2.69 45.36 0.12 3.13 16 3 H 0.12 2.46 6.22 -2.38 -0.01 2.44 16 4 C 0.16 5.26 3.55 46.19 0.16 5.42 16 5 H 0.10 2.83 7.98 -2.39 -0.02 2.81 16 6 N -0.72 -31.33 4.00 -317.26 -1.27 -32.60 16 7 C -0.23 -11.50 9.93 84.03 0.83 -10.67 16 8 H 0.09 3.91 7.78 -2.91 -0.02 3.88 16 9 C -0.07 -3.85 5.50 84.86 0.47 -3.38 16 10 N -0.97 -56.51 13.06 21.65 0.28 -56.23 16 11 Si 0.97 43.53 29.55 68.60 2.03 45.55 16 12 H -0.28 -11.85 7.11 99.48 0.71 -11.15 16 13 H -0.31 -14.34 7.11 99.48 0.71 -13.63 16 14 H -0.28 -12.24 7.11 99.48 0.71 -11.53 16 15 C -0.15 -4.29 6.77 31.98 0.22 -4.08 16 16 C 0.11 3.61 6.90 86.85 0.60 4.21 16 17 N -0.60 -18.71 3.07 -793.33 -2.43 -21.15 16 18 C 0.57 18.82 7.56 86.73 0.66 19.47 16 19 O -0.59 -23.02 16.64 -3.98 -0.07 -23.09 16 20 C -0.17 -4.55 5.11 -20.08 -0.10 -4.66 16 21 C -0.07 -1.58 6.39 22.50 0.14 -1.44 16 22 C -0.16 -3.05 9.43 22.34 0.21 -2.84 16 23 C 0.16 3.33 6.62 38.27 0.25 3.58 16 24 N -0.41 -7.86 2.97 -346.57 -1.03 -8.89 16 25 C -0.03 -0.52 10.73 83.16 0.89 0.37 16 26 C -0.20 -3.31 10.86 22.16 0.24 -3.06 16 27 C -0.20 -3.37 10.86 22.15 0.24 -3.13 16 28 C -0.03 -0.49 10.73 83.16 0.89 0.40 16 29 C -0.16 -3.11 9.43 22.34 0.21 -2.90 16 30 C -0.04 -0.87 9.58 22.50 0.22 -0.65 16 31 H 0.06 2.26 5.27 -2.38 -0.01 2.25 16 32 H 0.08 2.18 7.93 -2.39 -0.02 2.16 16 33 H 0.06 1.82 4.79 -2.39 -0.01 1.81 16 34 H 0.38 18.49 6.23 -92.71 -0.58 17.91 16 35 H 0.25 14.33 8.31 -92.71 -0.77 13.55 16 36 H 0.07 2.43 8.14 -2.39 -0.02 2.41 16 37 H 0.09 2.25 8.14 -2.39 -0.02 2.23 16 38 H 0.07 2.34 8.01 -2.39 -0.02 2.32 16 39 H 0.04 1.67 8.14 -2.39 -0.02 1.65 16 40 H 0.18 3.73 2.17 -3.62 -0.01 3.72 16 41 H 0.16 2.27 6.68 -2.91 -0.02 2.25 16 42 H 0.18 2.22 6.99 -2.91 -0.02 2.20 16 43 H 0.16 1.92 8.06 -2.91 -0.02 1.90 16 44 H 0.16 1.98 8.06 -2.91 -0.02 1.96 16 45 H 0.18 2.33 6.99 -2.91 -0.02 2.31 16 46 H 0.16 2.29 6.68 -2.91 -0.02 2.27 16 47 H 0.14 3.36 7.69 -2.91 -0.02 3.33 16 Total: -1.00 -66.96 371.01 4.75 -62.21 By element: Atomic # 1 Polarization: 38.64 SS G_CDS: 0.44 Total: 39.08 kcal Atomic # 6 Polarization: -11.69 SS G_CDS: 6.80 Total: -4.89 kcal Atomic # 7 Polarization: -114.42 SS G_CDS: -4.45 Total: -118.86 kcal Atomic # 8 Polarization: -23.02 SS G_CDS: -0.07 Total: -23.09 kcal Atomic # 14 Polarization: 43.53 SS G_CDS: 2.03 Total: 45.55 kcal Total: -66.96 4.75 -62.21 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000986498421.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 161.059 kcal (2) G-P(sol) polarization free energy of solvation -66.958 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 94.101 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.752 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.206 kcal (6) G-S(sol) free energy of system = (1) + (5) 98.853 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds