Wall clock time and date at job start Tue Mar 31 2020 22:32:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08994 * 109.99423 * 2 1 4 4 C 1.54322 * 109.88236 * 238.90434 * 2 1 3 5 5 H 1.09004 * 110.71710 * 336.93056 * 4 2 1 6 6 N 1.46500 * 110.72073 * 100.02427 * 4 2 1 7 7 C 1.36933 * 119.99976 * 202.55756 * 6 4 2 8 8 H 1.07997 * 119.99970 * 0.02562 * 7 6 4 9 9 C 1.38819 * 119.99682 * 180.02562 * 7 6 4 10 10 N 1.31610 * 120.00036 * 0.02562 * 9 7 6 11 11 Si 1.86800 * 119.99888 * 180.02562 * 9 7 6 12 12 H 1.48498 * 109.47066 * 59.99867 * 11 9 7 13 13 H 1.48496 * 109.47067 * 300.00307 * 11 9 7 14 14 H 1.48492 * 109.47075 * 179.97438 * 11 9 7 15 15 C 1.55151 * 103.10014 * 218.48034 * 4 2 1 16 16 C 1.54907 * 101.58752 * 35.41173 * 15 4 2 17 17 N 1.47323 * 110.06167 * 121.17240 * 2 1 3 18 18 C 1.34779 * 125.61503 * 298.24400 * 17 2 1 19 19 O 1.21550 * 119.99594 * 175.91333 * 18 17 2 20 20 C 1.47854 * 120.00059 * 355.91681 * 18 17 2 21 21 C 1.39614 * 120.11274 * 356.24851 * 20 18 17 22 22 C 1.37978 * 119.98486 * 179.74312 * 21 20 18 23 23 C 1.38272 * 120.21429 * 0.55660 * 22 21 20 24 24 C 1.38904 * 120.22899 * 359.69538 * 23 22 21 25 25 N 1.40221 * 119.99639 * 180.02562 * 24 23 22 26 26 C 1.36566 * 125.67251 * 179.66827 * 25 24 23 27 27 C 1.34851 * 108.20316 * 179.89197 * 26 25 24 28 28 C 1.40936 * 107.46582 * 0.37178 * 27 26 25 29 29 C 1.34853 * 107.47040 * 359.76984 * 28 27 26 30 30 C 1.38589 * 120.00879 * 0.02562 * 24 23 22 31 31 H 1.09004 * 109.47285 * 161.64614 * 1 2 3 32 32 H 1.09003 * 109.47190 * 281.63838 * 1 2 3 33 33 H 1.08993 * 109.47568 * 41.64450 * 1 2 3 34 34 H 0.97001 * 119.99680 * 22.56197 * 6 4 2 35 35 H 0.97007 * 120.00292 * 359.97438 * 10 9 7 36 36 H 1.09005 * 111.00657 * 153.49228 * 15 4 2 37 37 H 1.09005 * 111.00011 * 277.33409 * 15 4 2 38 38 H 1.09005 * 110.36178 * 81.82946 * 16 15 4 39 39 H 1.09000 * 110.37025 * 204.04066 * 16 15 4 40 40 H 1.08000 * 120.00832 * 0.02562 * 21 20 18 41 41 H 1.07998 * 119.89212 * 180.25708 * 22 21 20 42 42 H 1.08002 * 119.88636 * 179.71748 * 23 22 21 43 43 H 1.08002 * 125.89313 * 0.02781 * 26 25 24 44 44 H 1.08000 * 126.26611 * 180.12174 * 27 26 25 45 45 H 1.08005 * 126.26789 * 179.74641 * 28 27 26 46 46 H 1.07998 * 125.90136 * 180.02562 * 29 28 27 47 47 H 1.08007 * 120.10347 * 179.97438 * 30 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9027 1.0242 0.0000 4 6 2.0549 -0.7495 -1.2427 5 1 1.3039 -1.4437 -1.6201 6 7 2.4555 0.1961 -2.2875 7 6 2.5063 -0.2090 -3.5946 8 1 2.2507 -1.2254 -3.8553 9 6 2.8864 0.6869 -4.5845 10 7 3.1983 1.9254 -4.2667 11 14 2.9551 0.1346 -6.3677 12 1 1.6092 -0.3237 -6.7961 13 1 3.9245 -0.9821 -6.5030 14 1 3.3856 1.2707 -7.2215 15 6 3.2869 -1.5177 -0.6957 16 6 2.8162 -1.8831 0.7341 17 7 2.0354 -0.7163 1.1840 18 6 1.8176 -0.3641 2.4666 19 8 2.2219 -1.0720 3.3682 20 6 1.0868 0.8832 2.7769 21 6 0.6898 1.7373 1.7463 22 6 0.0033 2.8979 2.0384 23 6 -0.2836 3.2251 3.3509 24 6 0.1117 2.3844 4.3836 25 7 -0.1823 2.7207 5.7127 26 6 0.1440 1.9797 6.8125 27 6 -0.3036 2.6294 7.9061 28 6 -0.9364 3.8098 7.4675 29 6 -0.8479 3.8407 6.1222 30 6 0.7967 1.2134 4.1004 31 1 -0.3634 -0.9754 -0.3236 32 1 -0.3634 0.2073 1.0066 33 1 -0.3634 0.7679 -0.6828 34 1 2.6847 1.1090 -2.0534 35 1 3.1623 2.2123 -3.3407 36 1 3.4811 -2.4144 -1.2843 37 1 4.1664 -0.8744 -0.6651 38 1 2.1880 -2.7737 0.7107 39 1 3.6743 -2.0421 1.3871 40 1 0.9160 1.4872 0.7202 41 1 -0.3067 3.5554 1.2397 42 1 -0.8173 4.1372 3.5738 43 1 0.6716 1.0373 6.8073 44 1 -0.1999 2.3028 8.9303 45 1 -1.4067 4.5534 8.0940 46 1 -1.2359 4.6172 5.4797 47 1 1.1052 0.5589 4.9023 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000986499163.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:32:06 Heat of formation + Delta-G solvation = 106.842010 kcal Electronic energy + Delta-G solvation = -29024.503234 eV Core-core repulsion = 25175.368479 eV Total energy + Delta-G solvation = -3849.134754 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -41.89614 -40.82365 -38.60202 -37.71515 -34.64703 -33.82459 -32.02601 -31.65505 -31.27216 -29.25070 -28.92095 -28.66185 -25.39189 -24.45617 -23.35925 -23.24378 -22.30772 -20.75817 -20.58664 -20.13197 -19.58585 -18.51292 -17.50506 -16.98397 -16.28442 -16.14489 -15.53960 -15.22088 -15.13069 -14.77799 -14.49856 -14.28538 -13.94079 -13.89406 -13.72587 -13.43028 -13.30045 -13.07271 -12.72285 -12.56512 -12.44114 -12.34260 -12.26556 -11.80039 -11.73737 -11.46459 -11.24064 -11.07600 -10.74507 -10.70819 -10.32456 -10.08677 -10.00382 -9.95532 -9.37045 -9.32670 -9.06449 -8.62468 -8.50108 -8.22237 -7.23831 -6.25032 -3.28112 0.47321 0.78224 2.12021 2.51351 2.75751 2.80231 2.93982 3.44314 3.46523 3.62049 3.64358 4.17761 4.41965 4.51412 4.58789 4.67159 4.74189 4.83447 4.88167 4.94275 4.97296 5.06693 5.22668 5.26939 5.28532 5.34659 5.41486 5.50699 5.55744 5.60268 5.63808 5.68227 5.75342 5.90430 5.96340 5.98953 6.05096 6.07314 6.08216 6.09175 6.23974 6.29595 6.40478 6.45992 6.66084 6.69903 6.93734 7.17027 7.48500 7.65740 8.08465 8.59276 9.01833 9.88589 10.00950 11.22480 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.020271 B = 0.002509 C = 0.002293 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1380.954194 B =11156.497553 C =12206.718203 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.103 3.897 3 H 0.092 0.908 4 C 0.183 3.817 5 H 0.071 0.929 6 N -0.725 5.725 7 C -0.337 4.337 8 H 0.067 0.933 9 C -0.039 4.039 10 N -0.939 5.939 11 Si 1.079 2.921 12 H -0.294 1.294 13 H -0.294 1.294 14 H -0.285 1.285 15 C -0.156 4.156 16 C 0.107 3.893 17 N -0.600 5.600 18 C 0.573 3.427 19 O -0.544 6.544 20 C -0.105 4.105 21 C -0.130 4.130 22 C -0.102 4.102 23 C -0.115 4.115 24 C 0.122 3.878 25 N -0.394 5.394 26 C -0.013 4.013 27 C -0.193 4.193 28 C -0.192 4.192 29 C -0.017 4.017 30 C -0.081 4.081 31 H 0.064 0.936 32 H 0.066 0.934 33 H 0.078 0.922 34 H 0.368 0.632 35 H 0.255 0.745 36 H 0.080 0.920 37 H 0.074 0.926 38 H 0.067 0.933 39 H 0.074 0.926 40 H 0.180 0.820 41 H 0.140 0.860 42 H 0.133 0.867 43 H 0.166 0.834 44 H 0.140 0.860 45 H 0.140 0.860 46 H 0.164 0.836 47 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.392 1.234 17.478 19.428 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.001 4.001 3 H 0.109 0.891 4 C 0.071 3.929 5 H 0.089 0.911 6 N -0.367 5.367 7 C -0.467 4.467 8 H 0.085 0.915 9 C -0.238 4.238 10 N -0.583 5.583 11 Si 0.910 3.090 12 H -0.221 1.221 13 H -0.221 1.221 14 H -0.210 1.210 15 C -0.197 4.197 16 C -0.015 4.015 17 N -0.333 5.333 18 C 0.363 3.637 19 O -0.423 6.423 20 C -0.109 4.109 21 C -0.148 4.148 22 C -0.121 4.121 23 C -0.134 4.134 24 C 0.030 3.970 25 N -0.066 5.066 26 C -0.140 4.140 27 C -0.217 4.217 28 C -0.216 4.216 29 C -0.144 4.144 30 C -0.101 4.101 31 H 0.083 0.917 32 H 0.085 0.915 33 H 0.097 0.903 34 H 0.202 0.798 35 H 0.066 0.934 36 H 0.098 0.902 37 H 0.093 0.907 38 H 0.085 0.915 39 H 0.092 0.908 40 H 0.197 0.803 41 H 0.158 0.842 42 H 0.151 0.849 43 H 0.183 0.817 44 H 0.158 0.842 45 H 0.158 0.842 46 H 0.182 0.818 47 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -7.843 1.091 16.086 17.929 hybrid contribution -0.273 -0.203 1.773 1.805 sum -8.116 0.888 17.858 19.636 Atomic orbital electron populations 1.22639 0.94236 1.03671 1.02489 1.22495 0.94538 0.96853 0.86199 0.89092 1.21242 0.93980 0.91353 0.86329 0.91067 1.42337 1.81465 1.09678 1.03247 1.19989 1.44540 0.98072 0.84113 0.91471 1.25795 0.99147 0.94425 1.04395 1.70909 1.50911 1.16799 1.19723 0.83250 0.75958 0.74959 0.74871 1.22141 1.22150 1.20997 1.23582 1.01013 1.01951 0.93131 1.22308 0.95110 0.87742 0.96347 1.48465 1.51725 1.28555 1.04508 1.17776 0.79654 0.84911 0.81396 1.90753 1.52623 1.53847 1.45079 1.19680 1.01766 0.96126 0.93298 1.23358 0.95403 0.93254 1.02745 1.21078 0.98309 0.96937 0.95756 1.21040 1.00975 0.99409 0.92021 1.17697 1.00759 0.96003 0.82583 1.41627 1.42993 1.18301 1.03660 1.21992 1.07317 0.99759 0.84963 1.20987 1.05455 0.97197 0.98050 1.20985 1.06730 1.00274 0.93606 1.21896 1.04103 0.92351 0.96017 1.20822 0.97367 0.95127 0.96833 0.91656 0.91544 0.90344 0.79828 0.93364 0.90164 0.90709 0.91508 0.90765 0.80333 0.84193 0.84944 0.81717 0.84182 0.84209 0.81822 0.84107 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.21 7.83 37.16 0.29 -1.91 16 2 C 0.10 1.50 2.45 -66.79 -0.16 1.34 16 3 H 0.09 1.35 5.60 -51.93 -0.29 1.06 16 4 C 0.18 3.17 3.11 -66.10 -0.21 2.97 16 5 H 0.07 1.26 7.52 -51.93 -0.39 0.87 16 6 N -0.73 -15.99 5.23 -51.65 -0.27 -16.26 16 7 C -0.34 -8.59 9.97 -15.06 -0.15 -8.74 16 8 H 0.07 1.69 7.83 -52.49 -0.41 1.28 16 9 C -0.04 -1.07 5.50 -17.43 -0.10 -1.16 16 10 N -0.94 -27.14 13.70 55.49 0.76 -26.38 16 11 Si 1.08 24.36 29.92 -169.99 -5.09 19.27 16 12 H -0.29 -6.33 7.11 56.52 0.40 -5.93 16 13 H -0.29 -6.38 7.11 56.52 0.40 -5.98 16 14 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 15 C -0.16 -2.49 6.77 -24.59 -0.17 -2.66 16 16 C 0.11 1.56 6.89 -2.53 -0.02 1.54 16 17 N -0.60 -8.99 3.08 -167.70 -0.52 -9.51 16 18 C 0.57 9.08 7.56 -12.32 -0.09 8.99 16 19 O -0.54 -9.97 16.64 5.32 0.09 -9.88 16 20 C -0.11 -1.44 5.32 -104.99 -0.56 -1.99 16 21 C -0.13 -1.56 6.55 -39.16 -0.26 -1.82 16 22 C -0.10 -1.04 10.02 -39.66 -0.40 -1.44 16 23 C -0.11 -1.15 9.45 -39.32 -0.37 -1.52 16 24 C 0.12 1.42 6.61 -83.64 -0.55 0.87 16 25 N -0.39 -4.47 2.97 -60.96 -0.18 -4.65 16 26 C -0.01 -0.15 10.73 -16.65 -0.18 -0.32 16 27 C -0.19 -1.94 10.86 -39.76 -0.43 -2.37 16 28 C -0.19 -1.85 10.86 -39.76 -0.43 -2.28 16 29 C -0.02 -0.17 10.73 -16.64 -0.18 -0.35 16 30 C -0.08 -1.05 8.99 -39.00 -0.35 -1.40 16 31 H 0.06 0.83 7.68 -51.93 -0.40 0.43 16 32 H 0.07 0.81 4.94 -51.93 -0.26 0.55 16 33 H 0.08 0.97 8.11 -51.93 -0.42 0.55 16 34 H 0.37 8.37 6.37 -40.82 -0.26 8.11 16 35 H 0.26 7.18 6.78 -40.82 -0.28 6.90 16 36 H 0.08 1.25 8.14 -51.93 -0.42 0.82 16 37 H 0.07 1.31 8.14 -51.93 -0.42 0.88 16 38 H 0.07 0.90 8.14 -51.93 -0.42 0.47 16 39 H 0.07 1.08 8.08 -51.93 -0.42 0.66 16 40 H 0.18 2.19 2.03 -57.63 -0.12 2.08 16 41 H 0.14 1.11 8.06 -52.49 -0.42 0.69 16 42 H 0.13 1.01 6.69 -52.49 -0.35 0.66 16 43 H 0.17 1.55 7.01 -52.49 -0.37 1.18 16 44 H 0.14 1.12 8.06 -52.49 -0.42 0.70 16 45 H 0.14 1.04 8.06 -52.48 -0.42 0.62 16 46 H 0.16 1.18 7.00 -52.49 -0.37 0.81 16 47 H 0.14 1.81 6.29 -52.48 -0.33 1.48 16 LS Contribution 373.60 15.07 5.63 5.63 Total: -1.00 -31.48 373.60 -9.88 -41.36 By element: Atomic # 1 Polarization: 18.68 SS G_CDS: -5.99 Total: 12.69 kcal Atomic # 6 Polarization: -7.96 SS G_CDS: -4.31 Total: -12.27 kcal Atomic # 7 Polarization: -56.59 SS G_CDS: -0.21 Total: -56.79 kcal Atomic # 8 Polarization: -9.97 SS G_CDS: 0.09 Total: -9.88 kcal Atomic # 14 Polarization: 24.36 SS G_CDS: -5.09 Total: 19.27 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -31.48 -9.88 -41.36 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000986499163.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 148.202 kcal (2) G-P(sol) polarization free energy of solvation -31.484 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 116.718 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.876 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.360 kcal (6) G-S(sol) free energy of system = (1) + (5) 106.842 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds