Wall clock time and date at job start Tue Mar 31 2020 22:32:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08994 * 109.99423 * 2 1 4 4 C 1.54322 * 109.88236 * 238.90434 * 2 1 3 5 5 H 1.09004 * 110.71710 * 336.93056 * 4 2 1 6 6 N 1.46500 * 110.72073 * 100.02427 * 4 2 1 7 7 C 1.36933 * 119.99976 * 202.55756 * 6 4 2 8 8 H 1.07997 * 119.99970 * 0.02562 * 7 6 4 9 9 C 1.38819 * 119.99682 * 180.02562 * 7 6 4 10 10 N 1.31610 * 120.00036 * 0.02562 * 9 7 6 11 11 Si 1.86800 * 119.99888 * 180.02562 * 9 7 6 12 12 H 1.48498 * 109.47066 * 59.99867 * 11 9 7 13 13 H 1.48496 * 109.47067 * 300.00307 * 11 9 7 14 14 H 1.48492 * 109.47075 * 179.97438 * 11 9 7 15 15 C 1.55151 * 103.10014 * 218.48034 * 4 2 1 16 16 C 1.54907 * 101.58752 * 35.41173 * 15 4 2 17 17 N 1.47323 * 110.06167 * 121.17240 * 2 1 3 18 18 C 1.34779 * 125.61503 * 298.24400 * 17 2 1 19 19 O 1.21550 * 119.99594 * 175.91333 * 18 17 2 20 20 C 1.47854 * 120.00059 * 355.91681 * 18 17 2 21 21 C 1.39614 * 120.11274 * 356.24851 * 20 18 17 22 22 C 1.37978 * 119.98486 * 179.74312 * 21 20 18 23 23 C 1.38272 * 120.21429 * 0.55660 * 22 21 20 24 24 C 1.38904 * 120.22899 * 359.69538 * 23 22 21 25 25 N 1.40221 * 119.99639 * 180.02562 * 24 23 22 26 26 C 1.36566 * 125.67251 * 179.66827 * 25 24 23 27 27 C 1.34851 * 108.20316 * 179.89197 * 26 25 24 28 28 C 1.40936 * 107.46582 * 0.37178 * 27 26 25 29 29 C 1.34853 * 107.47040 * 359.76984 * 28 27 26 30 30 C 1.38589 * 120.00879 * 0.02562 * 24 23 22 31 31 H 1.09004 * 109.47285 * 161.64614 * 1 2 3 32 32 H 1.09003 * 109.47190 * 281.63838 * 1 2 3 33 33 H 1.08993 * 109.47568 * 41.64450 * 1 2 3 34 34 H 0.97001 * 119.99680 * 22.56197 * 6 4 2 35 35 H 0.97007 * 120.00292 * 359.97438 * 10 9 7 36 36 H 1.09005 * 111.00657 * 153.49228 * 15 4 2 37 37 H 1.09005 * 111.00011 * 277.33409 * 15 4 2 38 38 H 1.09005 * 110.36178 * 81.82946 * 16 15 4 39 39 H 1.09000 * 110.37025 * 204.04066 * 16 15 4 40 40 H 1.08000 * 120.00832 * 0.02562 * 21 20 18 41 41 H 1.07998 * 119.89212 * 180.25708 * 22 21 20 42 42 H 1.08002 * 119.88636 * 179.71748 * 23 22 21 43 43 H 1.08002 * 125.89313 * 0.02781 * 26 25 24 44 44 H 1.08000 * 126.26611 * 180.12174 * 27 26 25 45 45 H 1.08005 * 126.26789 * 179.74641 * 28 27 26 46 46 H 1.07998 * 125.90136 * 180.02562 * 29 28 27 47 47 H 1.08007 * 120.10347 * 179.97438 * 30 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9027 1.0242 0.0000 4 6 2.0549 -0.7495 -1.2427 5 1 1.3039 -1.4437 -1.6201 6 7 2.4555 0.1961 -2.2875 7 6 2.5063 -0.2090 -3.5946 8 1 2.2507 -1.2254 -3.8553 9 6 2.8864 0.6869 -4.5845 10 7 3.1983 1.9254 -4.2667 11 14 2.9551 0.1346 -6.3677 12 1 1.6092 -0.3237 -6.7961 13 1 3.9245 -0.9821 -6.5030 14 1 3.3856 1.2707 -7.2215 15 6 3.2869 -1.5177 -0.6957 16 6 2.8162 -1.8831 0.7341 17 7 2.0354 -0.7163 1.1840 18 6 1.8176 -0.3641 2.4666 19 8 2.2219 -1.0720 3.3682 20 6 1.0868 0.8832 2.7769 21 6 0.6898 1.7373 1.7463 22 6 0.0033 2.8979 2.0384 23 6 -0.2836 3.2251 3.3509 24 6 0.1117 2.3844 4.3836 25 7 -0.1823 2.7207 5.7127 26 6 0.1440 1.9797 6.8125 27 6 -0.3036 2.6294 7.9061 28 6 -0.9364 3.8098 7.4675 29 6 -0.8479 3.8407 6.1222 30 6 0.7967 1.2134 4.1004 31 1 -0.3634 -0.9754 -0.3236 32 1 -0.3634 0.2073 1.0066 33 1 -0.3634 0.7679 -0.6828 34 1 2.6847 1.1090 -2.0534 35 1 3.1623 2.2123 -3.3407 36 1 3.4811 -2.4144 -1.2843 37 1 4.1664 -0.8744 -0.6651 38 1 2.1880 -2.7737 0.7107 39 1 3.6743 -2.0421 1.3871 40 1 0.9160 1.4872 0.7202 41 1 -0.3067 3.5554 1.2397 42 1 -0.8173 4.1372 3.5738 43 1 0.6716 1.0373 6.8073 44 1 -0.1999 2.3028 8.9303 45 1 -1.4067 4.5534 8.0940 46 1 -1.2359 4.6172 5.4797 47 1 1.1052 0.5589 4.9023 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000986499163.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:32:05 Heat of formation + Delta-G solvation = 90.645547 kcal Electronic energy + Delta-G solvation = -29025.205565 eV Core-core repulsion = 25175.368479 eV Total energy + Delta-G solvation = -3849.837086 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -42.71339 -41.94092 -39.62175 -38.99704 -36.33672 -34.83475 -33.31826 -32.91616 -32.30981 -30.65389 -29.81658 -29.56945 -26.85371 -25.55269 -24.99034 -24.23407 -23.36648 -22.05001 -21.53074 -20.97478 -20.57245 -19.68280 -19.12953 -18.08987 -17.46648 -17.31800 -16.75073 -16.36376 -16.10693 -15.93781 -15.81805 -15.46758 -15.22401 -14.99673 -14.75251 -14.58657 -14.43946 -14.20292 -13.96032 -13.65273 -13.45020 -13.27171 -13.12129 -13.01532 -12.83729 -12.73633 -12.51202 -12.39731 -12.28977 -12.20480 -11.86787 -11.60216 -11.33673 -11.12558 -10.92616 -10.81183 -10.30756 -9.83808 -9.25758 -9.12708 -9.05309 -8.33603 -5.30410 -0.45483 -0.11211 1.27576 1.59307 1.64027 1.71607 1.74213 1.87054 1.88113 2.02086 2.66456 2.73306 3.10121 3.35924 3.47669 3.59066 3.63581 3.73792 3.77963 3.89943 3.98484 4.01112 4.07507 4.18555 4.23292 4.24855 4.33683 4.42324 4.53317 4.57725 4.64289 4.69103 4.74010 4.79064 4.81418 4.91622 5.02174 5.07066 5.14615 5.19351 5.20113 5.27834 5.30624 5.31316 5.54333 5.65450 5.93135 6.17561 6.26283 6.39582 6.54701 6.86036 7.09508 7.98707 8.08989 9.17928 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.020271 B = 0.002509 C = 0.002293 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1380.954194 B =11156.497553 C =12206.718203 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.114 3.886 3 H 0.091 0.909 4 C 0.177 3.823 5 H 0.073 0.927 6 N -0.735 5.735 7 C -0.326 4.326 8 H 0.071 0.929 9 C -0.099 4.099 10 N -0.975 5.975 11 Si 1.122 2.878 12 H -0.277 1.277 13 H -0.281 1.281 14 H -0.298 1.298 15 C -0.147 4.147 16 C 0.111 3.889 17 N -0.600 5.600 18 C 0.570 3.430 19 O -0.577 6.577 20 C -0.122 4.122 21 C -0.133 4.133 22 C -0.096 4.096 23 C -0.104 4.104 24 C 0.117 3.883 25 N -0.404 5.404 26 C -0.040 4.040 27 C -0.197 4.197 28 C -0.201 4.201 29 C -0.023 4.023 30 C -0.093 4.093 31 H 0.066 0.934 32 H 0.075 0.925 33 H 0.084 0.916 34 H 0.362 0.638 35 H 0.247 0.753 36 H 0.086 0.914 37 H 0.057 0.943 38 H 0.083 0.917 39 H 0.073 0.927 40 H 0.176 0.824 41 H 0.169 0.831 42 H 0.164 0.836 43 H 0.167 0.833 44 H 0.156 0.844 45 H 0.161 0.839 46 H 0.192 0.808 47 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.072 1.912 17.768 20.513 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.010 3.990 3 H 0.108 0.892 4 C 0.067 3.933 5 H 0.091 0.909 6 N -0.376 5.376 7 C -0.457 4.457 8 H 0.089 0.911 9 C -0.290 4.290 10 N -0.623 5.623 11 Si 0.948 3.052 12 H -0.203 1.203 13 H -0.207 1.207 14 H -0.224 1.224 15 C -0.188 4.188 16 C -0.011 4.011 17 N -0.332 5.332 18 C 0.361 3.639 19 O -0.459 6.459 20 C -0.125 4.125 21 C -0.151 4.151 22 C -0.114 4.114 23 C -0.124 4.124 24 C 0.025 3.975 25 N -0.076 5.076 26 C -0.166 4.166 27 C -0.221 4.221 28 C -0.225 4.225 29 C -0.149 4.149 30 C -0.113 4.113 31 H 0.085 0.915 32 H 0.093 0.907 33 H 0.103 0.897 34 H 0.195 0.805 35 H 0.057 0.943 36 H 0.104 0.896 37 H 0.076 0.924 38 H 0.101 0.899 39 H 0.092 0.908 40 H 0.192 0.808 41 H 0.186 0.814 42 H 0.181 0.819 43 H 0.184 0.816 44 H 0.173 0.827 45 H 0.179 0.821 46 H 0.209 0.791 47 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -9.543 1.728 16.412 19.064 hybrid contribution 0.227 -0.422 1.819 1.881 sum -9.316 1.305 18.232 20.515 Atomic orbital electron populations 1.22579 0.92474 1.03997 1.03227 1.22362 0.95756 0.96199 0.84634 0.89174 1.21407 0.94487 0.91002 0.86423 0.90879 1.42427 1.81758 1.10171 1.03251 1.20288 1.42022 0.97893 0.85491 0.91149 1.26987 0.99825 0.94307 1.07924 1.70997 1.53846 1.18149 1.19305 0.82677 0.76957 0.74482 0.71082 1.20295 1.20745 1.22436 1.23409 0.99611 1.01576 0.94162 1.22294 0.95451 0.88258 0.95114 1.48497 1.51571 1.28593 1.04529 1.18162 0.79337 0.85367 0.81033 1.90725 1.54195 1.55085 1.45869 1.19539 1.03056 0.95825 0.94109 1.23301 0.95911 0.93894 1.01951 1.21396 0.97007 0.96264 0.96699 1.21401 0.99848 0.99814 0.91339 1.17840 1.00496 0.95785 0.83416 1.41760 1.43522 1.18903 1.03432 1.22243 1.08411 1.00465 0.85525 1.21326 1.04848 0.97342 0.98628 1.21354 1.06634 1.00499 0.94018 1.22461 1.03442 0.92301 0.96721 1.20789 0.98269 0.95924 0.96363 0.91538 0.90679 0.89686 0.80487 0.94264 0.89573 0.92436 0.89916 0.90837 0.80765 0.81399 0.81871 0.81586 0.82686 0.82105 0.79089 0.85110 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.97 7.83 71.98 0.56 -3.41 16 2 C 0.11 3.24 2.45 45.28 0.11 3.35 16 3 H 0.09 2.64 5.60 -2.39 -0.01 2.62 16 4 C 0.18 6.02 3.11 46.18 0.14 6.17 16 5 H 0.07 2.49 7.52 -2.38 -0.02 2.48 16 6 N -0.73 -32.28 5.23 -317.34 -1.66 -33.94 16 7 C -0.33 -16.46 9.97 84.04 0.84 -15.62 16 8 H 0.07 3.46 7.83 -2.91 -0.02 3.44 16 9 C -0.10 -5.30 5.50 84.87 0.47 -4.83 16 10 N -0.98 -56.99 13.70 21.65 0.30 -56.70 16 11 Si 1.12 48.75 29.92 68.60 2.05 50.80 16 12 H -0.28 -11.12 7.11 99.48 0.71 -10.41 16 13 H -0.28 -11.46 7.11 99.48 0.71 -10.76 16 14 H -0.30 -13.51 7.11 99.48 0.71 -12.80 16 15 C -0.15 -4.64 6.77 31.98 0.22 -4.42 16 16 C 0.11 3.16 6.89 86.85 0.60 3.76 16 17 N -0.60 -17.79 3.08 -802.75 -2.47 -20.26 16 18 C 0.57 18.19 7.56 86.79 0.66 18.85 16 19 O -0.58 -21.67 16.64 -3.87 -0.06 -21.73 16 20 C -0.12 -3.29 5.32 -20.10 -0.11 -3.40 16 21 C -0.13 -3.01 6.55 22.54 0.15 -2.86 16 22 C -0.10 -1.67 10.02 22.22 0.22 -1.45 16 23 C -0.10 -1.79 9.45 22.44 0.21 -1.58 16 24 C 0.12 2.57 6.61 38.04 0.25 2.83 16 25 N -0.40 -8.61 2.97 -346.79 -1.03 -9.64 16 26 C -0.04 -0.86 10.73 83.18 0.89 0.03 16 27 C -0.20 -3.75 10.86 22.15 0.24 -3.51 16 28 C -0.20 -3.46 10.86 22.15 0.24 -3.21 16 29 C -0.02 -0.40 10.73 83.18 0.89 0.49 16 30 C -0.09 -2.40 8.99 22.65 0.20 -2.19 16 31 H 0.07 1.58 7.68 -2.38 -0.02 1.57 16 32 H 0.07 1.71 4.94 -2.39 -0.01 1.70 16 33 H 0.08 1.95 8.11 -2.39 -0.02 1.93 16 34 H 0.36 16.67 6.37 -92.71 -0.59 16.08 16 35 H 0.25 14.17 6.78 -92.70 -0.63 13.55 16 36 H 0.09 2.61 8.14 -2.38 -0.02 2.59 16 37 H 0.06 2.02 8.14 -2.38 -0.02 2.00 16 38 H 0.08 2.12 8.14 -2.38 -0.02 2.10 16 39 H 0.07 2.13 8.08 -2.39 -0.02 2.11 16 40 H 0.18 4.06 2.03 -7.74 -0.02 4.05 16 41 H 0.17 2.01 8.06 -2.91 -0.02 1.99 16 42 H 0.16 1.76 6.69 -2.91 -0.02 1.74 16 43 H 0.17 3.29 7.01 -2.91 -0.02 3.27 16 44 H 0.16 2.30 8.06 -2.91 -0.02 2.28 16 45 H 0.16 1.96 8.06 -2.91 -0.02 1.94 16 46 H 0.19 2.02 7.00 -2.91 -0.02 2.00 16 47 H 0.13 3.54 6.29 -2.91 -0.02 3.52 16 Total: -1.00 -68.00 373.60 4.47 -63.53 By element: Atomic # 1 Polarization: 38.40 SS G_CDS: 0.56 Total: 38.96 kcal Atomic # 6 Polarization: -17.81 SS G_CDS: 6.79 Total: -11.02 kcal Atomic # 7 Polarization: -115.67 SS G_CDS: -4.87 Total: -120.54 kcal Atomic # 8 Polarization: -21.67 SS G_CDS: -0.06 Total: -21.73 kcal Atomic # 14 Polarization: 48.75 SS G_CDS: 2.05 Total: 50.80 kcal Total: -68.00 4.47 -63.53 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000986499163.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 154.175 kcal (2) G-P(sol) polarization free energy of solvation -68.001 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 86.175 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.471 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.530 kcal (6) G-S(sol) free energy of system = (1) + (5) 90.646 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds