Wall clock time and date at job start Tue Mar 31 2020 22:32:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09007 * 109.99580 * 2 1 4 4 C 1.54335 * 109.78162 * 121.16113 * 2 1 3 5 5 H 1.08998 * 110.52017 * 215.80665 * 4 2 1 6 6 N 1.46496 * 110.85269 * 339.03611 * 4 2 1 7 7 C 1.36935 * 120.00465 * 200.14398 * 6 4 2 8 8 H 1.08006 * 119.99554 * 359.97438 * 7 6 4 9 9 C 1.38810 * 120.00364 * 179.97438 * 7 6 4 10 10 N 1.31621 * 120.00058 * 179.97438 * 9 7 6 11 11 Si 1.86804 * 119.99911 * 359.97438 * 9 7 6 12 12 H 1.48493 * 109.46867 * 90.00237 * 11 9 7 13 13 H 1.48503 * 109.46739 * 210.00085 * 11 9 7 14 14 H 1.48496 * 109.47188 * 330.00132 * 11 9 7 15 15 C 1.55163 * 103.01468 * 97.49766 * 4 2 1 16 16 C 1.54907 * 101.57991 * 35.31186 * 15 4 2 17 17 N 1.47019 * 109.88429 * 238.90695 * 2 1 3 18 18 C 1.34770 * 125.64742 * 59.55612 * 17 2 1 19 19 O 1.21558 * 120.00460 * 3.50263 * 18 17 2 20 20 C 1.47861 * 120.00224 * 183.49961 * 18 17 2 21 21 C 1.39617 * 120.10892 * 332.63960 * 20 18 17 22 22 C 1.37980 * 119.98135 * 180.02562 * 21 20 18 23 23 C 1.38262 * 120.21679 * 359.72587 * 22 21 20 24 24 C 1.38901 * 120.22876 * 0.54927 * 23 22 21 25 25 N 1.40231 * 119.99547 * 179.72656 * 24 23 22 26 26 C 1.36565 * 125.66417 * 359.72529 * 25 24 23 27 27 C 1.34859 * 108.19632 * 180.02562 * 26 25 24 28 28 C 1.40934 * 107.46668 * 0.26526 * 27 26 25 29 29 C 1.34853 * 107.46997 * 359.56313 * 28 27 26 30 30 C 1.38584 * 120.01163 * 359.44992 * 24 23 22 31 31 H 1.09001 * 109.47019 * 179.64214 * 1 2 3 32 32 H 1.09001 * 109.47122 * 299.63935 * 1 2 3 33 33 H 1.08999 * 109.47355 * 59.64129 * 1 2 3 34 34 H 0.97006 * 120.00009 * 20.13988 * 6 4 2 35 35 H 0.96999 * 119.99802 * 179.97438 * 10 9 7 36 36 H 1.09000 * 111.00758 * 277.22975 * 15 4 2 37 37 H 1.09009 * 111.03489 * 153.39496 * 15 4 2 38 38 H 1.09012 * 110.36222 * 204.14832 * 16 15 4 39 39 H 1.08995 * 110.37023 * 81.83140 * 16 15 4 40 40 H 1.08000 * 120.01083 * 0.03895 * 21 20 18 41 41 H 1.07996 * 119.88731 * 179.97438 * 22 21 20 42 42 H 1.08003 * 119.88189 * 180.29665 * 23 22 21 43 43 H 1.08001 * 125.90575 * 0.03629 * 26 25 24 44 44 H 1.08005 * 126.26113 * 180.02562 * 27 26 25 45 45 H 1.08007 * 126.26561 * 179.74170 * 28 27 26 46 46 H 1.08000 * 125.90258 * 180.15292 * 29 28 27 47 47 H 1.08002 * 120.10929 * 180.24660 * 30 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9027 1.0244 0.0000 4 6 2.0523 -0.7515 1.2427 5 1 2.9606 -0.2815 1.6197 6 7 1.0258 -0.8101 2.2863 7 6 1.3838 -1.0487 3.5863 8 1 2.4230 -1.1941 3.8422 9 6 0.4112 -1.1038 4.5752 10 7 0.7554 -1.3336 5.8247 11 14 -1.3860 -0.8516 4.1327 12 1 -2.0025 -2.1612 3.8009 13 1 -2.0995 -0.2466 5.2860 14 1 -1.4847 0.0533 2.9595 15 6 2.3561 -2.1697 0.6914 16 6 2.8613 -1.8464 -0.7369 17 7 2.0300 -0.7140 -1.1839 18 6 1.7753 -0.3844 -2.4656 19 8 1.1304 0.6142 -2.7199 20 6 2.2804 -1.2373 -3.5628 21 6 3.4332 -2.0034 -3.3803 22 6 3.9025 -2.7980 -4.4061 23 6 3.2315 -2.8432 -5.6141 24 6 2.0869 -2.0803 -5.8072 25 7 1.4134 -2.1254 -7.0364 26 6 1.7821 -2.8712 -8.1194 27 6 0.8906 -2.6494 -9.1067 28 6 -0.0597 -1.7296 -8.6197 29 6 0.2803 -1.4304 -7.3495 30 6 1.6071 -1.2789 -4.7834 31 1 -0.3633 -1.0277 -0.0064 32 1 -0.3633 0.5082 0.8932 33 1 -0.3634 0.5194 -0.8867 34 1 0.0924 -0.6799 2.0564 35 1 0.0758 -1.3717 6.5157 36 1 1.4522 -2.7778 0.6579 37 1 3.1327 -2.6597 1.2789 38 1 2.7178 -2.7048 -1.3933 39 1 3.9123 -1.5587 -0.7115 40 1 3.9574 -1.9743 -2.4365 41 1 4.7946 -3.3897 -4.2635 42 1 3.6009 -3.4707 -6.4118 43 1 2.6393 -3.5257 -8.1755 44 1 0.9047 -3.0924 -10.0916 45 1 -0.9071 -1.3383 -9.1633 46 1 -0.2491 -0.7542 -6.6947 47 1 0.7151 -0.6881 -4.9305 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000986499171.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:32:16 Heat of formation + Delta-G solvation = 70.931860 kcal Electronic energy + Delta-G solvation = -28738.257076 eV Core-core repulsion = 24887.565140 eV Total energy + Delta-G solvation = -3850.691935 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -42.63781 -41.67201 -39.77190 -38.74154 -36.16977 -34.49186 -33.57759 -32.59329 -32.17417 -31.10138 -29.82026 -29.72031 -27.06167 -25.79665 -24.91146 -24.04741 -23.52914 -21.78703 -21.15874 -20.78643 -20.33537 -19.90189 -19.36222 -17.84177 -17.30377 -17.10335 -16.85499 -16.45840 -16.03101 -16.02193 -15.88339 -15.48851 -15.10687 -14.89638 -14.73291 -14.63360 -14.36156 -14.09180 -13.73734 -13.66744 -13.52488 -13.26341 -13.19100 -13.14819 -13.07760 -12.88244 -12.87378 -12.55461 -12.30997 -12.26115 -11.89464 -11.71012 -11.58293 -11.07351 -11.00466 -10.85827 -10.21930 -9.77281 -9.32794 -9.24968 -9.05914 -8.02720 -5.35985 -0.34540 -0.05665 1.32550 1.36027 1.36732 1.43648 1.59420 1.80666 1.91828 2.02489 2.46051 2.70071 3.20737 3.29839 3.51532 3.62713 3.64891 3.76630 3.85780 4.01109 4.03698 4.07306 4.10986 4.25076 4.29152 4.29479 4.40838 4.48419 4.52501 4.56675 4.66355 4.69162 4.77025 4.77732 4.94388 4.96530 5.07308 5.14086 5.20125 5.22419 5.26209 5.28709 5.33276 5.43168 5.62283 5.78052 5.93503 6.17942 6.21184 6.39261 6.42760 6.95589 7.06387 7.81607 7.99130 9.18115 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.021450 B = 0.002385 C = 0.002259 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1305.062224 B =11738.642827 C =12394.006096 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.132 3.868 3 H 0.074 0.926 4 C 0.170 3.830 5 H 0.073 0.927 6 N -0.747 5.747 7 C -0.223 4.223 8 H 0.069 0.931 9 C -0.059 4.059 10 N -0.979 5.979 11 Si 0.937 3.063 12 H -0.279 1.279 13 H -0.297 1.297 14 H -0.256 1.256 15 C -0.147 4.147 16 C 0.093 3.907 17 N -0.599 5.599 18 C 0.568 3.432 19 O -0.578 6.578 20 C -0.112 4.112 21 C -0.108 4.108 22 C -0.083 4.083 23 C -0.112 4.112 24 C 0.119 3.881 25 N -0.405 5.405 26 C -0.019 4.019 27 C -0.204 4.204 28 C -0.199 4.199 29 C -0.042 4.042 30 C -0.104 4.104 31 H 0.056 0.944 32 H 0.062 0.938 33 H 0.059 0.941 34 H 0.368 0.632 35 H 0.257 0.743 36 H 0.062 0.938 37 H 0.092 0.908 38 H 0.106 0.894 39 H 0.107 0.893 40 H 0.166 0.834 41 H 0.180 0.820 42 H 0.164 0.836 43 H 0.196 0.804 44 H 0.161 0.839 45 H 0.152 0.848 46 H 0.164 0.836 47 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.978 -6.477 -29.690 31.418 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.028 3.972 3 H 0.092 0.908 4 C 0.061 3.939 5 H 0.091 0.909 6 N -0.392 5.392 7 C -0.354 4.354 8 H 0.087 0.913 9 C -0.250 4.250 10 N -0.629 5.629 11 Si 0.766 3.234 12 H -0.206 1.206 13 H -0.224 1.224 14 H -0.181 1.181 15 C -0.187 4.187 16 C -0.028 4.028 17 N -0.331 5.331 18 C 0.358 3.642 19 O -0.459 6.459 20 C -0.116 4.116 21 C -0.126 4.126 22 C -0.101 4.101 23 C -0.132 4.132 24 C 0.027 3.973 25 N -0.077 5.077 26 C -0.145 4.145 27 C -0.227 4.227 28 C -0.223 4.223 29 C -0.168 4.168 30 C -0.124 4.124 31 H 0.075 0.925 32 H 0.081 0.919 33 H 0.078 0.922 34 H 0.205 0.795 35 H 0.066 0.934 36 H 0.081 0.919 37 H 0.110 0.890 38 H 0.124 0.876 39 H 0.124 0.876 40 H 0.184 0.816 41 H 0.198 0.802 42 H 0.181 0.819 43 H 0.213 0.787 44 H 0.178 0.822 45 H 0.170 0.830 46 H 0.181 0.819 47 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 7.874 -5.946 -29.449 31.058 hybrid contribution -1.804 0.623 0.530 1.981 sum 6.070 -5.323 -28.919 30.025 Atomic orbital electron populations 1.21992 0.95801 1.01964 1.01879 1.21642 0.94433 0.96179 0.84938 0.90832 1.21359 0.91860 0.94620 0.86085 0.90882 1.42980 1.05299 1.87026 1.03904 1.19027 0.94111 1.38568 0.83651 0.91325 1.25349 1.01560 1.02945 0.95185 1.69845 1.33807 1.58443 1.00831 0.85693 0.81881 0.78380 0.77492 1.20558 1.22377 1.18097 1.23396 1.02040 0.98310 0.94968 1.23014 0.95409 0.88891 0.95474 1.48440 1.49859 1.30847 1.03976 1.18306 0.79384 0.84631 0.81858 1.90751 1.42660 1.28660 1.83855 1.19533 0.98780 1.00204 0.93035 1.22225 0.94356 0.94210 1.01826 1.21453 1.00323 0.97645 0.90647 1.21430 0.92902 0.98641 1.00184 1.17913 0.95124 0.99604 0.84675 1.41785 1.21106 1.35141 1.09662 1.22478 1.03976 1.01832 0.86241 1.21357 0.97262 1.03450 1.00670 1.21325 1.02964 1.03271 0.94789 1.22195 0.91883 1.03657 0.99056 1.20735 1.00875 0.99105 0.91717 0.92543 0.91886 0.92177 0.79501 0.93419 0.91889 0.88996 0.87638 0.87564 0.81639 0.80224 0.81900 0.78677 0.82167 0.83007 0.81912 0.86091 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.37 7.94 71.98 0.57 -4.80 16 2 C 0.13 4.18 3.47 45.34 0.16 4.34 16 3 H 0.07 2.40 8.14 -2.38 -0.02 2.38 16 4 C 0.17 5.78 3.45 46.19 0.16 5.93 16 5 H 0.07 2.50 8.12 -2.39 -0.02 2.48 16 6 N -0.75 -32.67 4.82 -317.31 -1.53 -34.20 16 7 C -0.22 -11.92 10.46 84.03 0.88 -11.04 16 8 H 0.07 3.94 8.06 -2.91 -0.02 3.92 16 9 C -0.06 -3.35 5.50 84.86 0.47 -2.88 16 10 N -0.98 -60.98 13.97 21.65 0.30 -60.67 16 11 Si 0.94 44.78 27.73 68.60 1.90 46.68 16 12 H -0.28 -13.07 7.11 99.48 0.71 -12.37 16 13 H -0.30 -14.49 7.11 99.48 0.71 -13.78 16 14 H -0.26 -11.22 6.50 99.48 0.65 -10.57 16 15 C -0.15 -3.95 6.77 31.99 0.22 -3.73 16 16 C 0.09 1.80 5.02 86.86 0.44 2.23 16 17 N -0.60 -15.87 3.08 -791.41 -2.44 -18.31 16 18 C 0.57 16.37 7.40 86.79 0.64 17.02 16 19 O -0.58 -21.16 15.68 -3.90 -0.06 -21.22 16 20 C -0.11 -2.47 5.70 -20.10 -0.11 -2.59 16 21 C -0.11 -1.51 7.93 22.54 0.18 -1.33 16 22 C -0.08 -0.76 10.02 22.21 0.22 -0.54 16 23 C -0.11 -1.30 9.45 22.43 0.21 -1.09 16 24 C 0.12 2.20 6.61 38.04 0.25 2.45 16 25 N -0.40 -7.71 2.97 -346.78 -1.03 -8.74 16 26 C -0.02 -0.29 10.73 83.18 0.89 0.61 16 27 C -0.20 -3.19 10.86 22.15 0.24 -2.95 16 28 C -0.20 -3.63 10.86 22.15 0.24 -3.39 16 29 C -0.04 -0.85 10.73 83.18 0.89 0.04 16 30 C -0.10 -2.35 8.99 22.65 0.20 -2.15 16 31 H 0.06 1.89 8.05 -2.39 -0.02 1.87 16 32 H 0.06 2.27 6.71 -2.39 -0.02 2.26 16 33 H 0.06 2.09 6.86 -2.39 -0.02 2.07 16 34 H 0.37 15.99 2.80 -92.70 -0.26 15.73 16 35 H 0.26 15.38 8.31 -92.71 -0.77 14.61 16 36 H 0.06 1.89 8.14 -2.39 -0.02 1.87 16 37 H 0.09 2.35 8.14 -2.38 -0.02 2.33 16 38 H 0.11 1.56 6.16 -2.38 -0.01 1.55 16 39 H 0.11 1.43 7.29 -2.39 -0.02 1.41 16 40 H 0.17 1.67 4.56 -2.91 -0.01 1.65 16 41 H 0.18 0.27 8.06 -2.91 -0.02 0.24 16 42 H 0.16 0.89 6.69 -2.91 -0.02 0.87 16 43 H 0.20 1.42 7.00 -2.91 -0.02 1.40 16 44 H 0.16 1.73 8.06 -2.91 -0.02 1.70 16 45 H 0.15 2.22 8.06 -2.91 -0.02 2.20 16 46 H 0.16 3.16 7.01 -2.91 -0.02 3.14 16 47 H 0.12 3.08 6.52 -2.91 -0.02 3.06 16 Total: -1.00 -74.88 373.62 4.58 -70.31 By element: Atomic # 1 Polarization: 29.34 SS G_CDS: 0.68 Total: 30.03 kcal Atomic # 6 Polarization: -10.62 SS G_CDS: 6.75 Total: -3.87 kcal Atomic # 7 Polarization: -117.22 SS G_CDS: -4.70 Total: -121.91 kcal Atomic # 8 Polarization: -21.16 SS G_CDS: -0.06 Total: -21.22 kcal Atomic # 14 Polarization: 44.78 SS G_CDS: 1.90 Total: 46.68 kcal Total: -74.88 4.58 -70.31 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000986499171.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 141.238 kcal (2) G-P(sol) polarization free energy of solvation -74.883 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.355 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.577 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.306 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.932 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds