Wall clock time and date at job start Tue Mar 31 2020 22:33:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.87314 * 2 1 4 4 C 1.54321 * 109.88460 * 238.98041 * 2 1 3 5 5 H 1.09004 * 110.71705 * 144.41089 * 4 2 1 6 6 N 1.46500 * 110.71968 * 21.13993 * 4 2 1 7 7 C 1.36935 * 119.99883 * 154.99889 * 6 4 2 8 8 H 1.07996 * 120.00355 * 359.97438 * 7 6 4 9 9 C 1.38817 * 119.99869 * 180.02562 * 7 6 4 10 10 N 1.31615 * 119.99926 * 359.97438 * 9 7 6 11 11 Si 1.86801 * 119.99947 * 179.97438 * 9 7 6 12 12 H 1.48494 * 109.47170 * 359.97438 * 11 9 7 13 13 H 1.48501 * 109.46837 * 120.00190 * 11 9 7 14 14 H 1.48496 * 109.47096 * 239.99877 * 11 9 7 15 15 C 1.55156 * 102.94454 * 262.77309 * 4 2 1 16 16 C 1.54909 * 101.58275 * 324.50212 * 15 4 2 17 17 N 1.47023 * 109.88243 * 121.01165 * 2 1 3 18 18 C 1.34777 * 125.65125 * 300.42710 * 17 2 1 19 19 O 1.21279 * 119.99614 * 359.97438 * 18 17 2 20 20 C 1.50701 * 120.00045 * 179.97438 * 18 17 2 21 21 C 1.50700 * 109.47051 * 180.02562 * 20 18 17 22 22 C 1.36179 * 120.19242 * 264.72605 * 21 20 18 23 23 C 1.39319 * 120.86494 * 179.67823 * 22 21 20 24 24 C 1.36103 * 121.06983 * 0.62019 * 23 22 21 25 25 C 1.40563 * 119.74737 * 359.68941 * 24 23 22 26 26 N 1.33690 * 121.07697 * 179.97438 * 25 24 23 27 27 C 1.31074 * 121.31764 * 180.02562 * 26 25 24 28 28 C 1.39335 * 121.75738 * 0.02562 * 27 26 25 29 29 C 1.36580 * 119.93826 * 359.93510 * 28 27 26 30 30 C 1.40394 * 120.19624 * 84.99706 * 21 20 18 31 31 H 1.09002 * 109.47153 * 180.70181 * 1 2 3 32 32 H 1.09001 * 109.46832 * 60.70372 * 1 2 3 33 33 H 1.09004 * 109.47261 * 300.70353 * 1 2 3 34 34 H 0.96999 * 119.99786 * 335.00216 * 6 4 2 35 35 H 0.96997 * 120.00209 * 179.97438 * 10 9 7 36 36 H 1.09003 * 110.99653 * 82.57162 * 15 4 2 37 37 H 1.08995 * 111.00486 * 206.42200 * 15 4 2 38 38 H 1.08998 * 110.36787 * 155.84956 * 16 15 4 39 39 H 1.09004 * 110.35950 * 278.05863 * 16 15 4 40 40 H 1.09000 * 109.47150 * 300.00028 * 20 18 17 41 41 H 1.08994 * 109.47159 * 59.99947 * 20 18 17 42 42 H 1.07998 * 119.56191 * 359.97387 * 22 21 20 43 43 H 1.08004 * 119.45936 * 180.30684 * 23 22 21 44 44 H 1.07993 * 120.12876 * 179.66183 * 24 23 22 45 45 H 1.08004 * 119.12632 * 179.97438 * 27 26 25 46 46 H 1.08002 * 120.03788 * 179.97438 * 28 27 26 47 47 H 1.07994 * 120.92538 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9005 1.0251 0.0000 4 6 2.0549 -0.7479 -1.2437 5 1 2.9657 -0.2809 -1.6185 6 7 1.0293 -0.7995 -2.2886 7 6 1.3955 -0.9339 -3.6012 8 1 2.4402 -1.0014 -3.8662 9 6 0.4237 -0.9823 -4.5913 10 7 -0.8495 -0.8996 -4.2684 11 14 0.9232 -1.1649 -6.3821 12 1 2.4033 -1.2353 -6.4784 13 1 0.3308 -2.4085 -6.9368 14 1 0.4324 0.0045 -7.1545 15 6 2.3520 -2.1685 -0.6953 16 6 2.8568 -1.8508 0.7344 17 7 2.0300 -0.7123 1.1850 18 6 1.7756 -0.3808 2.4663 19 8 1.0797 0.5803 2.7172 20 6 2.3558 -1.2042 3.5872 21 6 1.9231 -0.6272 4.9104 22 6 2.7321 0.2434 5.5752 23 6 2.3433 0.7904 6.7961 24 6 1.1514 0.4619 7.3652 25 6 0.2915 -0.4384 6.7126 26 7 -0.8851 -0.7800 7.2476 27 6 -1.6903 -1.6193 6.6434 28 6 -1.3630 -2.1966 5.4182 29 6 -0.1762 -1.8901 4.8157 30 6 0.6862 -0.9884 5.4677 31 1 -0.3633 -1.0276 0.0126 32 1 -0.3633 0.5029 -0.8963 33 1 -0.3634 0.5247 0.8836 34 1 0.0910 -0.7385 -2.0506 35 1 -1.5285 -0.9331 -4.9603 36 1 1.4452 -2.7727 -0.6641 37 1 3.1271 -2.6600 -1.2831 38 1 2.7088 -2.7099 1.3886 39 1 3.9097 -1.5695 0.7110 40 1 2.0000 -2.2312 3.5053 41 1 3.4437 -1.1903 3.5227 42 1 3.6856 0.5170 5.1481 43 1 3.0005 1.4825 7.3015 44 1 0.8675 0.8908 8.3148 45 1 -2.6323 -1.8709 7.1079 46 1 -2.0473 -2.8852 4.9450 47 1 0.0934 -2.3278 3.8660 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000986543250.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:33:23 Heat of formation + Delta-G solvation = 42.179326 kcal Electronic energy + Delta-G solvation = -29039.830347 eV Core-core repulsion = 25187.891609 eV Total energy + Delta-G solvation = -3851.938739 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -41.16262 -39.94981 -37.86375 -37.04909 -34.29767 -34.18504 -31.98522 -31.25213 -30.72480 -30.69536 -29.17548 -27.47008 -25.25582 -24.42348 -23.76808 -23.56043 -22.70843 -21.29051 -19.60535 -18.64095 -18.29811 -17.60254 -17.28087 -17.11058 -16.89113 -15.71837 -15.33282 -14.94063 -14.71588 -14.51847 -14.42200 -14.09260 -13.90186 -13.78825 -13.34567 -13.31954 -13.17749 -12.90484 -12.49884 -12.21494 -12.13240 -11.87290 -11.81088 -11.72536 -11.60034 -11.40568 -11.24140 -11.00748 -10.86291 -10.63654 -10.50355 -10.23924 -10.02693 -9.79032 -9.67736 -9.55185 -9.00224 -8.91643 -8.44422 -8.33443 -7.07509 -5.86192 -3.16199 0.21910 0.68456 1.82039 2.72359 2.72867 3.15751 3.37710 3.43602 3.45861 3.95773 4.12496 4.25657 4.51086 4.52986 4.60956 4.62754 4.64888 4.86186 4.94281 4.98440 5.02539 5.17352 5.22546 5.23747 5.28830 5.37648 5.50371 5.53584 5.58995 5.65253 5.75970 5.79808 5.84658 5.90276 6.00507 6.05891 6.18103 6.18386 6.27008 6.27511 6.37898 6.50219 6.52505 6.66148 6.68749 6.79900 6.93646 7.62373 7.71562 7.74440 8.29735 8.32680 9.43951 9.98649 10.33481 11.36224 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.021265 B = 0.002457 C = 0.002327 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1316.407371 B =11392.841041 C =12031.187536 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.127 3.873 3 H 0.070 0.930 4 C 0.174 3.826 5 H 0.066 0.934 6 N -0.716 5.716 7 C -0.245 4.245 8 H 0.072 0.928 9 C -0.010 4.010 10 N -0.930 5.930 11 Si 0.908 3.092 12 H -0.280 1.280 13 H -0.291 1.291 14 H -0.291 1.291 15 C -0.154 4.154 16 C 0.096 3.904 17 N -0.610 5.610 18 C 0.527 3.473 19 O -0.531 6.531 20 C -0.104 4.104 21 C -0.037 4.037 22 C -0.107 4.107 23 C -0.096 4.096 24 C -0.097 4.097 25 C 0.127 3.873 26 N -0.477 5.477 27 C 0.130 3.870 28 C -0.176 4.176 29 C -0.052 4.052 30 C -0.084 4.084 31 H 0.054 0.946 32 H 0.079 0.921 33 H 0.058 0.942 34 H 0.391 0.609 35 H 0.256 0.744 36 H 0.074 0.926 37 H 0.076 0.924 38 H 0.067 0.933 39 H 0.066 0.934 40 H 0.102 0.898 41 H 0.106 0.894 42 H 0.126 0.874 43 H 0.130 0.870 44 H 0.134 0.866 45 H 0.158 0.842 46 H 0.138 0.862 47 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.904 -3.491 22.106 23.421 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.024 3.976 3 H 0.088 0.912 4 C 0.062 3.938 5 H 0.084 0.916 6 N -0.359 5.359 7 C -0.376 4.376 8 H 0.090 0.910 9 C -0.207 4.207 10 N -0.578 5.578 11 Si 0.739 3.261 12 H -0.205 1.205 13 H -0.218 1.218 14 H -0.218 1.218 15 C -0.196 4.196 16 C -0.027 4.027 17 N -0.345 5.345 18 C 0.314 3.686 19 O -0.408 6.408 20 C -0.144 4.144 21 C -0.038 4.038 22 C -0.125 4.125 23 C -0.116 4.116 24 C -0.116 4.116 25 C 0.006 3.994 26 N -0.185 5.185 27 C -0.043 4.043 28 C -0.196 4.196 29 C -0.078 4.078 30 C -0.086 4.086 31 H 0.073 0.927 32 H 0.098 0.902 33 H 0.077 0.923 34 H 0.229 0.771 35 H 0.066 0.934 36 H 0.093 0.907 37 H 0.095 0.905 38 H 0.086 0.914 39 H 0.085 0.915 40 H 0.120 0.880 41 H 0.124 0.876 42 H 0.144 0.856 43 H 0.148 0.852 44 H 0.152 0.848 45 H 0.176 0.824 46 H 0.155 0.845 47 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 6.425 -2.514 22.944 23.959 hybrid contribution 0.124 -0.606 -1.909 2.006 sum 6.549 -3.119 21.035 22.251 Atomic orbital electron populations 1.21993 0.94624 1.02229 1.02737 1.21877 0.95378 0.95831 0.84554 0.91191 1.21172 0.93245 0.91984 0.87393 0.91649 1.42664 1.04496 1.86982 1.01771 1.19290 0.92595 1.42684 0.83056 0.90989 1.24765 0.95232 1.02558 0.98127 1.69664 0.98912 1.56938 1.32271 0.86108 0.77549 0.77295 0.85136 1.20506 1.21830 1.21808 1.23560 1.01677 1.01415 0.92930 1.22452 0.94619 0.88308 0.97304 1.48702 1.50357 1.30514 1.04916 1.19956 0.81207 0.85299 0.82108 1.90727 1.38330 1.28617 1.83132 1.20715 1.02853 1.00320 0.90464 1.19084 0.93164 0.97166 0.94369 1.20762 1.00111 0.96407 0.95246 1.20844 0.96331 0.99070 0.95325 1.20760 0.93393 0.97149 1.00300 1.18834 0.92181 0.96639 0.91764 1.68033 1.03220 1.13179 1.34052 1.22937 0.98129 0.91278 0.91949 1.21892 0.98054 1.02367 0.97319 1.21486 0.93340 0.94329 0.98604 1.18599 0.95470 0.98756 0.95801 0.92706 0.90184 0.92258 0.77119 0.93389 0.90721 0.90524 0.91422 0.91527 0.87997 0.87623 0.85558 0.85211 0.84843 0.82448 0.84454 0.84762 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.94 7.93 37.16 0.29 -2.64 16 2 C 0.13 2.19 3.47 -66.96 -0.23 1.96 16 3 H 0.07 1.26 8.14 -51.93 -0.42 0.83 16 4 C 0.17 3.21 3.48 -66.10 -0.23 2.98 16 5 H 0.07 1.20 8.09 -51.93 -0.42 0.78 16 6 N -0.72 -16.88 4.94 -51.65 -0.26 -17.14 16 7 C -0.25 -6.45 9.96 -15.06 -0.15 -6.60 16 8 H 0.07 1.83 7.83 -52.49 -0.41 1.42 16 9 C -0.01 -0.29 5.50 -17.43 -0.10 -0.38 16 10 N -0.93 -27.19 13.06 55.49 0.72 -26.47 16 11 Si 0.91 21.64 29.55 -169.99 -5.02 16.61 16 12 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 13 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 14 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 15 C -0.15 -2.34 6.77 -24.58 -0.17 -2.51 16 16 C 0.10 1.12 6.71 -2.35 -0.02 1.11 16 17 N -0.61 -8.74 3.09 -162.76 -0.50 -9.24 16 18 C 0.53 7.57 7.63 -10.98 -0.08 7.49 16 19 O -0.53 -9.76 14.94 5.56 0.08 -9.68 16 20 C -0.10 -1.06 4.27 -29.03 -0.12 -1.19 16 21 C -0.04 -0.43 4.38 -104.55 -0.46 -0.88 16 22 C -0.11 -1.11 9.58 -39.92 -0.38 -1.49 16 23 C -0.10 -0.93 9.94 -39.95 -0.40 -1.32 16 24 C -0.10 -1.09 9.98 -39.47 -0.39 -1.48 16 25 C 0.13 1.67 6.60 -84.86 -0.56 1.11 16 26 N -0.48 -6.16 10.34 -10.98 -0.11 -6.28 16 27 C 0.13 1.36 11.14 -17.47 -0.19 1.17 16 28 C -0.18 -1.78 10.03 -39.77 -0.40 -2.18 16 29 C -0.05 -0.60 9.37 -39.22 -0.37 -0.96 16 30 C -0.08 -1.08 5.74 -106.80 -0.61 -1.69 16 31 H 0.05 1.03 8.02 -51.93 -0.42 0.61 16 32 H 0.08 1.64 6.79 -51.93 -0.35 1.29 16 33 H 0.06 1.13 6.76 -51.93 -0.35 0.77 16 34 H 0.39 9.81 5.06 -40.82 -0.21 9.60 16 35 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 36 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 37 H 0.08 1.11 8.14 -51.93 -0.42 0.68 16 38 H 0.07 0.62 7.51 -51.93 -0.39 0.23 16 39 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 40 H 0.10 0.86 6.45 -51.93 -0.33 0.53 16 41 H 0.11 0.81 8.04 -51.93 -0.42 0.40 16 42 H 0.13 1.03 8.05 -52.49 -0.42 0.61 16 43 H 0.13 0.87 8.06 -52.48 -0.42 0.45 16 44 H 0.13 1.26 8.06 -52.49 -0.42 0.83 16 45 H 0.16 1.12 8.06 -52.48 -0.42 0.69 16 46 H 0.14 1.01 8.06 -52.49 -0.42 0.59 16 47 H 0.13 1.39 6.57 -52.49 -0.34 1.05 16 LS Contribution 381.99 15.07 5.76 5.76 Total: -1.00 -33.36 381.99 -10.48 -43.84 By element: Atomic # 1 Polarization: 16.70 SS G_CDS: -6.58 Total: 10.12 kcal Atomic # 6 Polarization: -2.96 SS G_CDS: -4.57 Total: -7.53 kcal Atomic # 7 Polarization: -58.97 SS G_CDS: -0.15 Total: -59.12 kcal Atomic # 8 Polarization: -9.76 SS G_CDS: 0.08 Total: -9.68 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -5.02 Total: 16.61 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -33.36 -10.48 -43.84 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000986543250.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.019 kcal (2) G-P(sol) polarization free energy of solvation -33.355 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.664 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.485 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.840 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.179 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds