Wall clock time and date at job start Tue Mar 31 2020 22:33:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.87314 * 2 1 4 4 C 1.54321 * 109.88460 * 238.98041 * 2 1 3 5 5 H 1.09004 * 110.71705 * 144.41089 * 4 2 1 6 6 N 1.46500 * 110.71968 * 21.13993 * 4 2 1 7 7 C 1.36935 * 119.99883 * 154.99889 * 6 4 2 8 8 H 1.07996 * 120.00355 * 359.97438 * 7 6 4 9 9 C 1.38817 * 119.99869 * 180.02562 * 7 6 4 10 10 N 1.31615 * 119.99926 * 359.97438 * 9 7 6 11 11 Si 1.86801 * 119.99947 * 179.97438 * 9 7 6 12 12 H 1.48494 * 109.47170 * 359.97438 * 11 9 7 13 13 H 1.48501 * 109.46837 * 120.00190 * 11 9 7 14 14 H 1.48496 * 109.47096 * 239.99877 * 11 9 7 15 15 C 1.55156 * 102.94454 * 262.77309 * 4 2 1 16 16 C 1.54909 * 101.58275 * 324.50212 * 15 4 2 17 17 N 1.47023 * 109.88243 * 121.01165 * 2 1 3 18 18 C 1.34777 * 125.65125 * 300.42710 * 17 2 1 19 19 O 1.21279 * 119.99614 * 359.97438 * 18 17 2 20 20 C 1.50701 * 120.00045 * 179.97438 * 18 17 2 21 21 C 1.50700 * 109.47051 * 180.02562 * 20 18 17 22 22 C 1.36179 * 120.19242 * 264.72605 * 21 20 18 23 23 C 1.39319 * 120.86494 * 179.67823 * 22 21 20 24 24 C 1.36103 * 121.06983 * 0.62019 * 23 22 21 25 25 C 1.40563 * 119.74737 * 359.68941 * 24 23 22 26 26 N 1.33690 * 121.07697 * 179.97438 * 25 24 23 27 27 C 1.31074 * 121.31764 * 180.02562 * 26 25 24 28 28 C 1.39335 * 121.75738 * 0.02562 * 27 26 25 29 29 C 1.36580 * 119.93826 * 359.93510 * 28 27 26 30 30 C 1.40394 * 120.19624 * 84.99706 * 21 20 18 31 31 H 1.09002 * 109.47153 * 180.70181 * 1 2 3 32 32 H 1.09001 * 109.46832 * 60.70372 * 1 2 3 33 33 H 1.09004 * 109.47261 * 300.70353 * 1 2 3 34 34 H 0.96999 * 119.99786 * 335.00216 * 6 4 2 35 35 H 0.96997 * 120.00209 * 179.97438 * 10 9 7 36 36 H 1.09003 * 110.99653 * 82.57162 * 15 4 2 37 37 H 1.08995 * 111.00486 * 206.42200 * 15 4 2 38 38 H 1.08998 * 110.36787 * 155.84956 * 16 15 4 39 39 H 1.09004 * 110.35950 * 278.05863 * 16 15 4 40 40 H 1.09000 * 109.47150 * 300.00028 * 20 18 17 41 41 H 1.08994 * 109.47159 * 59.99947 * 20 18 17 42 42 H 1.07998 * 119.56191 * 359.97387 * 22 21 20 43 43 H 1.08004 * 119.45936 * 180.30684 * 23 22 21 44 44 H 1.07993 * 120.12876 * 179.66183 * 24 23 22 45 45 H 1.08004 * 119.12632 * 179.97438 * 27 26 25 46 46 H 1.08002 * 120.03788 * 179.97438 * 28 27 26 47 47 H 1.07994 * 120.92538 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9005 1.0251 0.0000 4 6 2.0549 -0.7479 -1.2437 5 1 2.9657 -0.2809 -1.6185 6 7 1.0293 -0.7995 -2.2886 7 6 1.3955 -0.9339 -3.6012 8 1 2.4402 -1.0014 -3.8662 9 6 0.4237 -0.9823 -4.5913 10 7 -0.8495 -0.8996 -4.2684 11 14 0.9232 -1.1649 -6.3821 12 1 2.4033 -1.2353 -6.4784 13 1 0.3308 -2.4085 -6.9368 14 1 0.4324 0.0045 -7.1545 15 6 2.3520 -2.1685 -0.6953 16 6 2.8568 -1.8508 0.7344 17 7 2.0300 -0.7123 1.1850 18 6 1.7756 -0.3808 2.4663 19 8 1.0797 0.5803 2.7172 20 6 2.3558 -1.2042 3.5872 21 6 1.9231 -0.6272 4.9104 22 6 2.7321 0.2434 5.5752 23 6 2.3433 0.7904 6.7961 24 6 1.1514 0.4619 7.3652 25 6 0.2915 -0.4384 6.7126 26 7 -0.8851 -0.7800 7.2476 27 6 -1.6903 -1.6193 6.6434 28 6 -1.3630 -2.1966 5.4182 29 6 -0.1762 -1.8901 4.8157 30 6 0.6862 -0.9884 5.4677 31 1 -0.3633 -1.0276 0.0126 32 1 -0.3633 0.5029 -0.8963 33 1 -0.3634 0.5247 0.8836 34 1 0.0910 -0.7385 -2.0506 35 1 -1.5285 -0.9331 -4.9603 36 1 1.4452 -2.7727 -0.6641 37 1 3.1271 -2.6600 -1.2831 38 1 2.7088 -2.7099 1.3886 39 1 3.9097 -1.5695 0.7110 40 1 2.0000 -2.2312 3.5053 41 1 3.4437 -1.1903 3.5227 42 1 3.6856 0.5170 5.1481 43 1 3.0005 1.4825 7.3015 44 1 0.8675 0.8908 8.3148 45 1 -2.6323 -1.8709 7.1079 46 1 -2.0473 -2.8852 4.9450 47 1 0.0934 -2.3278 3.8660 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000986543250.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:33:22 Heat of formation + Delta-G solvation = 22.200495 kcal Electronic energy + Delta-G solvation = -29040.696694 eV Core-core repulsion = 25187.891609 eV Total energy + Delta-G solvation = -3852.805086 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -42.00192 -41.10637 -39.03282 -37.97290 -35.90590 -35.09997 -33.51853 -32.36788 -31.98670 -31.47476 -30.68870 -28.44599 -26.77258 -25.43595 -25.13964 -24.55223 -23.89799 -22.24230 -20.86068 -19.85614 -19.45251 -19.05985 -18.10733 -18.07899 -17.91330 -16.99287 -16.54192 -16.39357 -15.82695 -15.61797 -15.42775 -15.25799 -15.12109 -14.84569 -14.62718 -14.38825 -14.15276 -13.85839 -13.83240 -13.58643 -13.27158 -13.07049 -12.93533 -12.91995 -12.84334 -12.61399 -12.56638 -12.47491 -12.15330 -12.04247 -12.00846 -11.60155 -11.51750 -11.47492 -10.92664 -10.80734 -10.49644 -9.70904 -9.63579 -9.14903 -9.00574 -7.93689 -5.22434 -0.57932 -0.11371 0.98120 1.49328 1.50217 1.59728 1.65240 1.87989 2.12353 2.58027 3.11763 3.37645 3.37811 3.46100 3.60238 3.79656 3.80814 3.84209 3.88051 3.94605 4.01864 4.11835 4.21483 4.24747 4.32010 4.39565 4.43276 4.49183 4.53889 4.58960 4.61568 4.67095 4.81920 4.86595 4.88551 5.03321 5.06433 5.08226 5.14832 5.21686 5.28681 5.34745 5.41665 5.49495 5.52043 5.56313 5.61061 5.93345 6.28168 6.61470 6.92457 7.19587 7.35431 8.09575 8.32441 9.30169 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.021265 B = 0.002457 C = 0.002327 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1316.407371 B =11392.841041 C =12031.187536 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.134 3.866 3 H 0.059 0.941 4 C 0.165 3.835 5 H 0.069 0.931 6 N -0.732 5.732 7 C -0.236 4.236 8 H 0.082 0.918 9 C -0.077 4.077 10 N -0.971 5.971 11 Si 0.971 3.029 12 H -0.262 1.262 13 H -0.296 1.296 14 H -0.299 1.299 15 C -0.146 4.146 16 C 0.103 3.897 17 N -0.609 5.609 18 C 0.525 3.475 19 O -0.578 6.578 20 C -0.092 4.092 21 C -0.054 4.054 22 C -0.111 4.111 23 C -0.093 4.093 24 C -0.115 4.115 25 C 0.097 3.903 26 N -0.504 5.504 27 C 0.122 3.878 28 C -0.178 4.178 29 C -0.069 4.069 30 C -0.105 4.105 31 H 0.049 0.951 32 H 0.052 0.948 33 H 0.051 0.949 34 H 0.380 0.620 35 H 0.250 0.750 36 H 0.056 0.944 37 H 0.089 0.911 38 H 0.105 0.895 39 H 0.097 0.903 40 H 0.124 0.876 41 H 0.141 0.859 42 H 0.151 0.849 43 H 0.160 0.840 44 H 0.142 0.858 45 H 0.187 0.813 46 H 0.164 0.836 47 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.617 -4.775 23.053 25.431 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.030 3.970 3 H 0.077 0.923 4 C 0.055 3.945 5 H 0.087 0.913 6 N -0.375 5.375 7 C -0.368 4.368 8 H 0.100 0.900 9 C -0.269 4.269 10 N -0.622 5.622 11 Si 0.801 3.199 12 H -0.186 1.186 13 H -0.223 1.223 14 H -0.227 1.227 15 C -0.187 4.187 16 C -0.018 4.018 17 N -0.343 5.343 18 C 0.316 3.684 19 O -0.458 6.458 20 C -0.131 4.131 21 C -0.056 4.056 22 C -0.129 4.129 23 C -0.112 4.112 24 C -0.134 4.134 25 C -0.023 4.023 26 N -0.212 5.212 27 C -0.050 4.050 28 C -0.197 4.197 29 C -0.095 4.095 30 C -0.107 4.107 31 H 0.068 0.932 32 H 0.071 0.929 33 H 0.070 0.930 34 H 0.215 0.785 35 H 0.058 0.942 36 H 0.075 0.925 37 H 0.107 0.893 38 H 0.123 0.877 39 H 0.115 0.885 40 H 0.142 0.858 41 H 0.159 0.841 42 H 0.169 0.831 43 H 0.178 0.822 44 H 0.160 0.840 45 H 0.204 0.796 46 H 0.181 0.819 47 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 9.220 -3.825 23.927 25.925 hybrid contribution -0.711 -0.162 -2.103 2.226 sum 8.509 -3.987 21.823 23.760 Atomic orbital electron populations 1.21791 0.96118 1.01230 1.00877 1.21556 0.94001 0.95690 0.85802 0.92290 1.21397 0.91957 0.94469 0.86652 0.91321 1.42848 1.05091 1.87297 1.02216 1.19700 0.92871 1.39933 0.84253 0.89987 1.25545 0.95331 1.03951 1.02042 1.69824 0.99903 1.59508 1.32963 0.85096 0.77991 0.76374 0.80429 1.18624 1.22320 1.22668 1.23362 1.01470 0.98387 0.95449 1.22635 0.95387 0.88543 0.95275 1.48721 1.50518 1.30882 1.04170 1.20723 0.80250 0.84941 0.82533 1.90715 1.40406 1.30904 1.83748 1.20744 1.04635 1.00141 0.87604 1.19323 0.93126 0.97963 0.95166 1.21163 1.00909 0.95533 0.95282 1.21219 0.96041 0.98816 0.95168 1.21018 0.94022 0.97401 1.00946 1.19229 0.92825 0.97678 0.92605 1.68051 1.03793 1.14356 1.35019 1.23501 0.98808 0.90492 0.92210 1.22226 0.98059 1.02309 0.97106 1.21727 0.93959 0.94659 0.99128 1.18866 0.96432 0.99368 0.96039 0.93231 0.92896 0.93023 0.78462 0.94160 0.92549 0.89290 0.87714 0.88465 0.85839 0.84093 0.83099 0.82218 0.84048 0.79576 0.81858 0.83881 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.47 7.93 71.98 0.57 -4.90 16 2 C 0.13 4.57 3.47 45.34 0.16 4.73 16 3 H 0.06 2.13 8.14 -2.39 -0.02 2.11 16 4 C 0.17 5.93 3.48 46.18 0.16 6.09 16 5 H 0.07 2.42 8.09 -2.38 -0.02 2.40 16 6 N -0.73 -34.85 4.94 -317.33 -1.57 -36.42 16 7 C -0.24 -12.37 9.96 84.04 0.84 -11.53 16 8 H 0.08 4.05 7.83 -2.91 -0.02 4.03 16 9 C -0.08 -4.26 5.50 84.86 0.47 -3.79 16 10 N -0.97 -58.41 13.06 21.65 0.28 -58.12 16 11 Si 0.97 44.81 29.55 68.60 2.03 46.84 16 12 H -0.26 -11.16 7.11 99.48 0.71 -10.45 16 13 H -0.30 -13.73 7.11 99.48 0.71 -13.02 16 14 H -0.30 -14.05 7.11 99.48 0.71 -13.34 16 15 C -0.15 -4.05 6.77 31.99 0.22 -3.84 16 16 C 0.10 1.96 6.71 86.79 0.58 2.54 16 17 N -0.61 -15.95 3.09 -787.26 -2.43 -18.38 16 18 C 0.53 13.97 7.63 87.66 0.67 14.64 16 19 O -0.58 -20.98 14.94 -3.03 -0.05 -21.02 16 20 C -0.09 -1.56 4.27 29.10 0.12 -1.44 16 21 C -0.05 -1.16 4.38 -19.82 -0.09 -1.25 16 22 C -0.11 -2.03 9.58 22.05 0.21 -1.82 16 23 C -0.09 -1.64 9.94 22.03 0.22 -1.42 16 24 C -0.12 -2.53 9.98 22.34 0.22 -2.30 16 25 C 0.10 2.56 6.60 40.28 0.27 2.83 16 26 N -0.50 -13.09 10.34 -188.64 -1.95 -15.04 16 27 C 0.12 2.49 11.14 85.07 0.95 3.44 16 28 C -0.18 -3.41 10.03 22.15 0.22 -3.19 16 29 C -0.07 -1.53 9.37 22.50 0.21 -1.32 16 30 C -0.11 -2.62 5.74 -21.28 -0.12 -2.74 16 31 H 0.05 1.91 8.02 -2.39 -0.02 1.89 16 32 H 0.05 2.30 6.79 -2.39 -0.02 2.28 16 33 H 0.05 2.04 6.76 -2.38 -0.02 2.02 16 34 H 0.38 19.69 5.06 -92.71 -0.47 19.22 16 35 H 0.25 14.64 8.31 -92.71 -0.77 13.87 16 36 H 0.06 1.79 8.14 -2.39 -0.02 1.77 16 37 H 0.09 2.27 8.14 -2.39 -0.02 2.25 16 38 H 0.10 1.32 7.51 -2.39 -0.02 1.30 16 39 H 0.10 1.37 8.14 -2.39 -0.02 1.35 16 40 H 0.12 1.57 6.45 -2.39 -0.02 1.56 16 41 H 0.14 1.40 8.04 -2.39 -0.02 1.38 16 42 H 0.15 1.91 8.05 -2.91 -0.02 1.88 16 43 H 0.16 1.70 8.06 -2.91 -0.02 1.68 16 44 H 0.14 2.66 8.06 -2.91 -0.02 2.64 16 45 H 0.19 2.41 8.06 -2.91 -0.02 2.39 16 46 H 0.16 2.12 8.06 -2.91 -0.02 2.10 16 47 H 0.14 2.75 6.57 -2.91 -0.02 2.73 16 Total: -1.00 -76.10 381.99 2.71 -73.40 By element: Atomic # 1 Polarization: 33.51 SS G_CDS: 0.52 Total: 34.03 kcal Atomic # 6 Polarization: -11.15 SS G_CDS: 5.88 Total: -5.27 kcal Atomic # 7 Polarization: -122.30 SS G_CDS: -5.67 Total: -127.97 kcal Atomic # 8 Polarization: -20.98 SS G_CDS: -0.05 Total: -21.02 kcal Atomic # 14 Polarization: 44.81 SS G_CDS: 2.03 Total: 46.84 kcal Total: -76.10 2.71 -73.40 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000986543250.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.596 kcal (2) G-P(sol) polarization free energy of solvation -76.105 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.491 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.709 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.395 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.200 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds