Wall clock time and date at job start Tue Mar 31 2020 22:33:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09006 * 109.87449 * 2 1 4 4 C 1.54318 * 109.88589 * 121.01704 * 2 1 3 5 5 H 1.09003 * 110.71847 * 23.25059 * 4 2 1 6 6 N 1.46501 * 110.72340 * 259.97553 * 4 2 1 7 7 C 1.36940 * 120.00109 * 154.99771 * 6 4 2 8 8 H 1.08001 * 119.99911 * 0.02562 * 7 6 4 9 9 C 1.38808 * 119.99748 * 179.97438 * 7 6 4 10 10 N 1.31618 * 120.00176 * 0.02562 * 9 7 6 11 11 Si 1.86802 * 119.99856 * 179.97438 * 9 7 6 12 12 H 1.48498 * 109.47033 * 90.00309 * 11 9 7 13 13 H 1.48498 * 109.47181 * 210.00334 * 11 9 7 14 14 H 1.48501 * 109.47134 * 330.00288 * 11 9 7 15 15 C 1.55158 * 102.94590 * 141.60808 * 4 2 1 16 16 C 1.54914 * 101.58192 * 324.50345 * 15 4 2 17 17 N 1.47029 * 109.88442 * 238.82843 * 2 1 3 18 18 C 1.34777 * 125.64703 * 61.58893 * 17 2 1 19 19 O 1.21285 * 119.99926 * 0.02562 * 18 17 2 20 20 C 1.50697 * 119.99771 * 180.02562 * 18 17 2 21 21 C 1.50697 * 109.46945 * 180.02562 * 20 18 17 22 22 C 1.36180 * 120.19241 * 264.72897 * 21 20 18 23 23 C 1.39319 * 120.86615 * 179.68073 * 22 21 20 24 24 C 1.36107 * 121.06723 * 0.62524 * 23 22 21 25 25 C 1.40557 * 119.74683 * 359.67928 * 24 23 22 26 26 N 1.33692 * 121.07578 * 179.97438 * 25 24 23 27 27 C 1.31082 * 121.31946 * 180.02562 * 26 25 24 28 28 C 1.39333 * 121.75289 * 0.02562 * 27 26 25 29 29 C 1.36580 * 119.94091 * 359.93325 * 28 27 26 30 30 C 1.40387 * 120.19620 * 85.00292 * 21 20 18 31 31 H 1.09002 * 109.47153 * 298.98055 * 1 2 3 32 32 H 1.09001 * 109.46832 * 178.98246 * 1 2 3 33 33 H 1.09004 * 109.47261 * 58.98228 * 1 2 3 34 34 H 0.96997 * 119.99273 * 334.99826 * 6 4 2 35 35 H 0.97000 * 120.00003 * 180.02562 * 10 9 7 36 36 H 1.09003 * 111.00366 * 82.57268 * 15 4 2 37 37 H 1.08995 * 111.00914 * 206.38778 * 15 4 2 38 38 H 1.08999 * 110.36787 * 155.84172 * 16 15 4 39 39 H 1.08999 * 110.36029 * 278.05870 * 16 15 4 40 40 H 1.09001 * 109.47682 * 300.00397 * 20 18 17 41 41 H 1.09003 * 109.46941 * 60.00441 * 20 18 17 42 42 H 1.08003 * 119.56615 * 359.97402 * 22 21 20 43 43 H 1.07999 * 119.46362 * 180.30173 * 23 22 21 44 44 H 1.08000 * 120.12815 * 179.66991 * 24 23 22 45 45 H 1.08002 * 119.12504 * 180.02562 * 27 26 25 46 46 H 1.08003 * 120.03077 * 180.02562 * 28 27 26 47 47 H 1.07998 * 120.92288 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9006 1.0251 0.0000 4 6 2.0549 -0.7478 1.2437 5 1 1.3052 -1.4437 1.6201 6 7 2.4555 0.1992 2.2872 7 6 2.4583 -0.1896 3.6003 8 1 2.1655 -1.1945 3.8665 9 6 2.8384 0.7075 4.5889 10 7 3.1957 1.9320 4.2644 11 14 2.8415 0.1774 6.3801 12 1 4.1710 -0.3856 6.7274 13 1 2.5601 1.3517 7.2444 14 1 1.7958 -0.8554 6.5925 15 6 3.2876 -1.5133 0.6944 16 6 2.8145 -1.8804 -0.7343 17 7 2.0301 -0.7157 -1.1830 18 6 1.8072 -0.3655 -2.4653 19 8 1.1431 0.6172 -2.7189 20 6 2.3831 -1.1950 -3.5838 21 6 1.9908 -0.5934 -4.9086 22 6 0.8964 -1.0563 -5.5738 23 6 0.5172 -0.5059 -6.7962 24 6 1.2351 0.5000 -7.3666 25 6 2.3747 1.0005 -6.7136 26 7 3.0997 1.9875 -7.2499 27 6 4.1635 2.4576 -6.6453 28 6 4.5920 1.9548 -5.4185 29 6 3.8965 0.9463 -4.8147 30 6 2.7548 0.4436 -5.4671 31 1 -0.3633 0.4979 0.8990 32 1 -0.3633 -1.0275 -0.0183 33 1 -0.3634 0.5296 -0.8807 34 1 2.7188 1.1016 2.0480 35 1 3.4616 2.5588 4.9552 36 1 4.1655 -0.8679 0.6615 37 1 3.4857 -2.4089 1.2832 38 1 3.6716 -2.0356 -1.3896 39 1 2.1903 -2.7735 -0.7093 40 1 3.4698 -1.2127 -3.5008 41 1 1.9971 -2.2122 -3.5178 42 1 0.3120 -1.8574 -5.1458 43 1 -0.3576 -0.8871 -7.3019 44 1 0.9305 0.9119 -8.3173 45 1 4.7228 3.2559 -7.1105 46 1 5.4725 2.3632 -4.9448 47 1 4.2142 0.5450 -3.8637 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000986543251.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:33:27 Heat of formation + Delta-G solvation = 35.299451 kcal Electronic energy + Delta-G solvation = -28893.833945 eV Core-core repulsion = 25041.596873 eV Total energy + Delta-G solvation = -3852.237072 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -41.16325 -39.93437 -37.81816 -37.02998 -34.28132 -34.15805 -32.00388 -31.25380 -30.87863 -30.69761 -29.31074 -27.52969 -25.25742 -24.41737 -23.76490 -23.15934 -22.73198 -21.19256 -20.09837 -18.81958 -18.29773 -17.38626 -17.23296 -17.10129 -16.89090 -15.98716 -15.10128 -14.94006 -14.75138 -14.48461 -14.43631 -13.95607 -13.88466 -13.63520 -13.44057 -13.34931 -13.13812 -12.96324 -12.72512 -12.31957 -12.12293 -11.90660 -11.81400 -11.74638 -11.65160 -11.39719 -11.21046 -11.06950 -10.88843 -10.64765 -10.62282 -10.29013 -10.08245 -9.82437 -9.68668 -9.60566 -8.99332 -8.91710 -8.45134 -8.33547 -7.08432 -5.86029 -3.16784 0.21789 0.68391 1.81943 2.71500 2.72856 3.14972 3.37730 3.43297 3.45092 3.95666 4.12462 4.25431 4.50665 4.52823 4.60971 4.62708 4.64767 4.86087 4.93797 4.97624 5.02401 5.17145 5.21898 5.23511 5.27355 5.36813 5.43739 5.53308 5.61790 5.65317 5.74336 5.77941 5.84545 5.89233 5.91084 6.04573 6.08042 6.18283 6.24238 6.27319 6.37538 6.41154 6.53275 6.57491 6.67313 6.70392 6.85997 7.61091 7.70734 7.74363 8.28776 8.31722 9.42696 9.96786 10.31352 11.36046 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.019712 B = 0.002448 C = 0.002317 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1420.125196 B =11436.547246 C =12082.932184 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.126 3.874 3 H 0.076 0.924 4 C 0.177 3.823 5 H 0.067 0.933 6 N -0.714 5.714 7 C -0.245 4.245 8 H 0.072 0.928 9 C -0.009 4.009 10 N -0.929 5.929 11 Si 0.908 3.092 12 H -0.289 1.289 13 H -0.291 1.291 14 H -0.281 1.281 15 C -0.157 4.157 16 C 0.097 3.903 17 N -0.609 5.609 18 C 0.526 3.474 19 O -0.532 6.532 20 C -0.104 4.104 21 C -0.037 4.037 22 C -0.107 4.107 23 C -0.096 4.096 24 C -0.097 4.097 25 C 0.127 3.873 26 N -0.477 5.477 27 C 0.130 3.870 28 C -0.176 4.176 29 C -0.052 4.052 30 C -0.084 4.084 31 H 0.069 0.931 32 H 0.049 0.951 33 H 0.060 0.940 34 H 0.386 0.614 35 H 0.257 0.743 36 H 0.074 0.926 37 H 0.076 0.924 38 H 0.068 0.932 39 H 0.066 0.934 40 H 0.102 0.898 41 H 0.106 0.894 42 H 0.126 0.874 43 H 0.130 0.870 44 H 0.134 0.866 45 H 0.158 0.842 46 H 0.138 0.862 47 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.337 -8.137 -22.056 23.511 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.022 3.978 3 H 0.094 0.906 4 C 0.065 3.935 5 H 0.085 0.915 6 N -0.354 5.354 7 C -0.376 4.376 8 H 0.090 0.910 9 C -0.206 4.206 10 N -0.577 5.577 11 Si 0.739 3.261 12 H -0.216 1.216 13 H -0.217 1.217 14 H -0.207 1.207 15 C -0.198 4.198 16 C -0.026 4.026 17 N -0.344 5.344 18 C 0.314 3.686 19 O -0.408 6.408 20 C -0.143 4.143 21 C -0.038 4.038 22 C -0.125 4.125 23 C -0.116 4.116 24 C -0.116 4.116 25 C 0.006 3.994 26 N -0.185 5.185 27 C -0.043 4.043 28 C -0.196 4.196 29 C -0.078 4.078 30 C -0.086 4.086 31 H 0.088 0.912 32 H 0.068 0.932 33 H 0.079 0.921 34 H 0.220 0.780 35 H 0.067 0.933 36 H 0.093 0.907 37 H 0.095 0.905 38 H 0.086 0.914 39 H 0.084 0.916 40 H 0.120 0.880 41 H 0.124 0.876 42 H 0.144 0.856 43 H 0.148 0.852 44 H 0.152 0.848 45 H 0.176 0.824 46 H 0.156 0.844 47 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -0.423 -7.351 -22.890 24.045 hybrid contribution 0.541 -0.295 1.897 1.994 sum 0.118 -7.647 -20.993 22.343 Atomic orbital electron populations 1.22035 0.94938 1.01501 1.02708 1.21959 0.94444 0.96891 0.84467 0.90572 1.21236 0.93510 0.91580 0.87188 0.91474 1.42350 1.79251 1.11854 1.01935 1.19205 1.38571 0.96935 0.82888 0.90982 1.24771 1.01853 0.95845 0.98139 1.69663 1.50979 1.04609 1.32436 0.86181 0.77686 0.77298 0.84931 1.21643 1.21721 1.20677 1.23581 1.01444 1.01781 0.92995 1.22401 0.94559 0.88388 0.97294 1.48600 1.52221 1.28664 1.04917 1.19976 0.81069 0.85459 0.82126 1.90730 1.39649 1.27386 1.83062 1.20714 1.02956 1.00221 0.90455 1.19081 0.95332 0.95013 0.94360 1.20762 0.95977 1.00539 0.95237 1.20844 0.99401 0.96016 0.95314 1.20761 0.93703 0.96832 1.00298 1.18833 0.95465 0.93374 0.91742 1.68036 1.06122 1.10226 1.34104 1.22941 0.92201 0.97200 0.91950 1.21893 1.01978 0.98456 0.97297 1.21490 0.92806 0.94864 0.98628 1.18600 0.96634 0.97615 0.95793 0.91164 0.93165 0.92064 0.77987 0.93332 0.90682 0.90513 0.91397 0.91597 0.87978 0.87610 0.85562 0.85211 0.84839 0.82439 0.84441 0.84749 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.55 9.09 37.16 0.34 -2.21 16 2 C 0.13 2.17 3.21 -66.95 -0.22 1.95 16 3 H 0.08 1.50 7.71 -51.93 -0.40 1.10 16 4 C 0.18 3.25 3.14 -66.10 -0.21 3.04 16 5 H 0.07 1.24 7.80 -51.93 -0.41 0.84 16 6 N -0.71 -16.91 5.22 -51.65 -0.27 -17.18 16 7 C -0.25 -6.44 9.96 -15.06 -0.15 -6.59 16 8 H 0.07 1.82 7.83 -52.49 -0.41 1.41 16 9 C -0.01 -0.26 5.50 -17.43 -0.10 -0.36 16 10 N -0.93 -27.29 13.06 55.49 0.72 -26.56 16 11 Si 0.91 21.63 29.55 -169.99 -5.02 16.61 16 12 H -0.29 -6.86 7.11 56.52 0.40 -6.45 16 13 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 14 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 15 C -0.16 -2.38 6.77 -24.58 -0.17 -2.55 16 16 C 0.10 1.13 6.69 -2.53 -0.02 1.12 16 17 N -0.61 -8.73 3.07 -163.01 -0.50 -9.23 16 18 C 0.53 7.57 7.64 -10.99 -0.08 7.49 16 19 O -0.53 -9.78 15.08 5.55 0.08 -9.70 16 20 C -0.10 -1.06 4.25 -29.04 -0.12 -1.19 16 21 C -0.04 -0.43 4.38 -104.56 -0.46 -0.88 16 22 C -0.11 -1.11 9.58 -39.92 -0.38 -1.49 16 23 C -0.10 -0.93 9.94 -39.95 -0.40 -1.32 16 24 C -0.10 -1.09 9.98 -39.47 -0.39 -1.48 16 25 C 0.13 1.67 6.60 -84.86 -0.56 1.11 16 26 N -0.48 -6.18 10.34 -10.98 -0.11 -6.29 16 27 C 0.13 1.36 11.15 -17.46 -0.19 1.17 16 28 C -0.18 -1.79 10.03 -39.77 -0.40 -2.19 16 29 C -0.05 -0.60 9.36 -39.22 -0.37 -0.97 16 30 C -0.08 -1.08 5.74 -106.80 -0.61 -1.70 16 31 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 32 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 33 H 0.06 1.06 6.90 -51.93 -0.36 0.71 16 34 H 0.39 9.93 7.56 -40.82 -0.31 9.62 16 35 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 36 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 37 H 0.08 1.11 8.14 -51.93 -0.42 0.69 16 38 H 0.07 0.62 7.48 -51.93 -0.39 0.24 16 39 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 40 H 0.10 0.86 6.43 -51.93 -0.33 0.53 16 41 H 0.11 0.82 8.04 -51.93 -0.42 0.40 16 42 H 0.13 1.03 8.05 -52.48 -0.42 0.61 16 43 H 0.13 0.87 8.06 -52.49 -0.42 0.44 16 44 H 0.13 1.26 8.06 -52.49 -0.42 0.83 16 45 H 0.16 1.12 8.06 -52.49 -0.42 0.70 16 46 H 0.14 1.02 8.06 -52.48 -0.42 0.60 16 47 H 0.13 1.39 6.57 -52.49 -0.34 1.05 16 LS Contribution 386.29 15.07 5.82 5.82 Total: -1.00 -33.34 386.29 -10.49 -43.83 By element: Atomic # 1 Polarization: 16.47 SS G_CDS: -6.73 Total: 9.74 kcal Atomic # 6 Polarization: -2.56 SS G_CDS: -4.49 Total: -7.05 kcal Atomic # 7 Polarization: -59.10 SS G_CDS: -0.16 Total: -59.26 kcal Atomic # 8 Polarization: -9.78 SS G_CDS: 0.08 Total: -9.70 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -5.02 Total: 16.61 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -33.34 -10.49 -43.83 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000986543251.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.134 kcal (2) G-P(sol) polarization free energy of solvation -33.340 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.794 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.495 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.834 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.299 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds